Experiment set1IT052 for Agrobacterium fabrum C58

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -8.7 -6.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0486 -7.8 -5.4 dihydroorotate dehydrogenase compare
Atu1687 -7.7 -10.6 anthranilate phosphoribosyltransferase compare
Atu1750 -7.6 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -7.6 -10.4 prephenate dehydratase compare
Atu0679 -7.4 -5.1 ATP phosphoribosyltransferase compare
Atu2040 -7.4 -5.1 phosphoserine phosphatase compare
Atu1205 -7.2 -12.1 threonine dehydratase compare
Atu2289 -7.2 -18.1 anthranilate synthase component I and II compare
Atu3754 -7.0 -5.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -7.0 -9.6 3-isopropylmalate dehydrogenase compare
Atu1688 -6.9 -4.8 indole-3-glycerol-phosphate synthase compare
Atu2718 -6.9 -8.2 homoserine O-succinyltransferase compare
Atu2264 -6.9 -13.9 2-isopropylmalate synthase compare
Atu3483 -6.8 -8.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2726 -6.7 -22.5 pyruvate carboxylase compare
Atu2709 -6.7 -20.3 3-isopropylmalate dehydratase, large subunit compare
Atu2036 -6.5 -17.8 acetolactate synthase III, large subunit compare
Atu0678 -6.5 -6.3 histidyl-tRNA synthetase compare
Atu1588 -6.4 -10.7 homoserine dehydrogenase compare
Atu0537 -6.3 -7.5 histidinol dehydrogenase compare
Atu1075 -6.2 -8.5 amidophosphoribosyltransferase compare
Atu3482 -6.2 -13.2 pantoate--beta-alanine ligase compare
Atu3755 -6.1 -5.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1850 -6.1 -7.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3706 -6.0 -9.2 D-3-phosphoglycerate dehydrogenase compare
Atu1141 -5.9 -9.0 Phosphoribosylglycinamide synthetase compare
Atu0432 -5.9 -11.3 O-succinylhomoserine sulfhydrylase compare
Atu0184 -5.9 -4.1 glucokinase compare
Atu1844 -5.8 -5.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3885 -5.8 -11.8 inositol monophosphatase compare
Atu3707 -5.6 -5.1 phosphoserine aminotransferase compare
Atu0298 -5.6 -6.7 orotidine 5 compare
Atu0039 -5.5 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0400 -5.3 -5.9 orotate phosphoribosyltransferase compare
Atu2790 -5.2 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu0017 -5.2 -5.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1030 -5.1 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1845 -5.0 -6.6 phosphoribosylformylglycinamidine synthase I compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu2747 -4.8 -12.6 hypothetical protein compare
Atu0399 -4.7 -7.8 dihydroorotase compare
Atu0421 -4.6 -2.6 ABC transporter, membrane spanning protein compare
Atu0030 -4.5 -2.5 phosphocarrier protein HPr compare
Atu1307 -4.4 -7.1 dihydroorotase compare
Atu0038 -4.3 -5.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0647 -4.3 -7.2 phosphoribosylamine--glycine ligase compare
Atu0043 -4.3 -5.1 imidazoleglycerol-phosphate dehydratase compare
Atu2015 -4.3 -19.3 aminotransferase compare
Atu1308 -4.2 -6.6 aspartate carbamoyl transferase catalytic subunit compare
Atu0641 -4.2 -4.7 hypothetical protein compare
Atu3469 -4.1 -4.8 phosphoglyceromutase compare
Atu3783 -4.0 -19.7 glutamate synthase subunit beta compare
Atu1686 -3.9 -19.6 peptidyl-prolyl cis-trans isomerse D compare
Atu2548 -3.9 -20.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0040 -3.8 -2.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0602 -3.8 -14.7 glutamine synthetase compare
Atu3739 -3.8 -4.6 phosphoglycerate kinase compare
Atu0422 -3.4 -3.1 ABC transporter, membrane spanning protein compare
Atu1589 -3.4 -9.3 aminotransferase, class I compare
Atu1359 -3.4 -1.9 dnaK deletion suppressor protein compare
Atu2650 -3.3 -12.4 glycerol-3-phosphate dehydrogenase compare
Atu1464 -3.3 -7.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu3784 -3.2 -23.1 glutamate synthase large subunit compare
Atu1462 -3.1 -15.1 glycine cleavage system protein P2 compare
Atu0659 -3.1 -6.7 NTP pyrophosphohydrolase, MutT family compare
Atu3731 -3.1 -10.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1463 -3.0 -10.2 glycine cleavage system component H compare
Atu6098 -3.0 -1.2 transcriptional regulator, HTH family compare
Atu0185 -2.9 -3.4 methylglyoxal synthase compare
Atu0601 -2.9 -14.4 oxidoreductase compare
Atu0999 -2.9 -7.6 magnesium transport protein compare
Atu4075 -2.8 -10.7 glycogen synthase compare
Atu0876 -2.7 -3.2 superoxide dismutase compare
Atu0598 -2.6 -10.4 phosphogluconate dehydratase compare
Atu0912 -2.5 -1.9 Na+/H+ antiporter compare
Atu1446 -2.3 -4.3 two component response regulator compare
Atu2155 -2.3 -17.2 methionine synthase compare
Atu4098 -2.2 -12.2 quinolinate synthetase compare
Atu3997 -2.2 -13.3 biotin synthetase compare
Atu1456 -2.1 -12.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2684 -2.1 -3.5 hypothetical protein compare
Atu4173 -2.1 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
Atu3763 -2.1 -2.6 hypothetical protein compare
Atu1021 -2.0 -4.5 outer membrane protein compare
Atu4096 -2.0 -7.1 nicotinate-nucleotide pyrophosphorylase compare
Atu1604 -2.0 -14.0 poly-beta-hydroxybutyrate synthase compare
Atu1454 -1.9 -7.4 siroheme synthase compare
Atu3999 -1.9 -3.6 dithiobiotin synthetase compare
Atu4001 -1.8 -7.9 3-oxoacyl-ACP synthase compare
Atu3290 -1.8 -9.1 phosphomethylpyrimidine kinase compare
Atu2569 -1.8 -10.1 thiamine biosynthesis protein compare
Atu3998 -1.8 -11.3 8-amino-7-oxononanoate synthase compare
Atu0434 -1.8 -4.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4000 -1.8 -12.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3288 -1.7 -9.1 hydroxyethylthiazole kinase compare
Atu2209 -1.7 -3.4 pyrroline-5-carboxylate reductase compare
Atu2554 -1.7 -3.8 lysyl-tRNA synthetase compare
Atu2348 -1.7 -10.2 sugar binding protein compare
Atu6114 -1.7 -2.8 hypothetical protein compare
Atu2125 -1.6 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2127 -1.6 -8.7 L-carnitine dehydratase compare
Atu1810 -1.6 -1.5 hypothetical protein compare
Atu0332 -1.6 -8.1 RNA polymerase sigma-54 factor compare
Atu2349 -1.5 -3.1 hypothetical protein compare
Atu3576 -1.5 -9.3 xylose ABC transporter substrate-binding protein conserved
Atu1620 -1.4 -9.4 triosephosphate isomerase compare
Atu0354 -1.4 -3.2 ferric uptake regulator compare
Atu2831 -1.4 -4.9 glucose inhibited division protein A compare
Atu5057 -1.4 -1.9 hypothetical protein compare
Atu2045 -1.4 -5.8 HFLK protein compare
Atu2346 -1.4 -9.1 ABC transporter, membrane spanning protein (sugar) compare
Atu3289 -1.4 -4.8 thiamine-phosphate pyrophosphorylase compare
Atu2347 -1.4 -7.9 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2832 -1.4 -4.4 tRNA modification GTPase compare
Atu4097 -1.4 -8.0 L-aspartate oxidase compare
Atu3575 -1.4 -5.7 xylose ABC transporter permease conserved
Atu4711 -1.3 -5.0 two component sensor kinase compare
Atu4346 -1.3 -4.5 hypothetical protein compare
Atu3574 -1.3 -5.9 xylose ABC transporter ATPase compare
Atu4317 -1.3 -4.3 TetR family transcriptional regulator compare
Atu1163 -1.3 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0388 -1.3 -8.6 two component sensor kinase compare
Atu0368 -1.3 -6.0 tRNA pseudouridine synthase I compare
Atu3910 -1.2 -4.3 LamB/YcsF family protein compare
Atu0769 -1.2 -1.6 protoheme IX farnesyltransferase compare
Atu2682 -1.2 -2.5 hypothetical protein compare
Atu0792 -1.2 -6.8 hypothetical protein compare
Atu0190 -1.2 -5.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0189 -1.2 -4.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2044 -1.2 -7.3 HFLC protein compare
Atu2239 -1.2 -4.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1685 -1.1 -1.3 hypothetical protein compare
Atu2238 -1.1 -6.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0188 -1.1 -4.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0029 -1.1 -4.8 S-adenosylhomocysteine hydrolase compare
Atu6189 -1.1 -0.9 protein secretion chaperone compare
Atu1455 -1.1 -2.7 hypothetical protein compare
Atu2205 -1.1 -3.5 transcriptional regulator, MarR family compare
Atu8115 -1.0 -2.6 Hypothetical Protein compare
Atu2123 -1.0 -4.6 methylenetetrahydrofolate reductase compare
Atu0346 -1.0 -2.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2237 -1.0 -2.7 cytochrome c1 compare
Atu4635 -0.9 -4.5 hypothetical protein compare
Atu0361 -0.9 -2.9 transcriptional regulator compare
Atu3908 -0.9 -6.5 GntR family transcriptional regulator compare
Atu1748 -0.9 -6.0 NIFU-like protein compare
Atu0977 -0.9 -2.4 serine protease DO-like protease compare
Atu3730 -0.9 -1.1 hypothetical protein compare
Atu2555 -0.9 -4.3 L-lysine 2,3-aminomutase compare
Atu2020 -0.9 -2.8 transcriptional regulator, TetR family compare
Atu4541 -0.9 -4.0 carboxymuconolactone decarboxylase compare
Atu1470 -0.9 -1.2 Camphor resistance protein compare
Atu0981 -0.9 -6.4 glutamate-ammonia-ligase adenylyltransferase compare
Atu2692 -0.9 -2.3 intracellular septation protein compare
Atu1774 -0.9 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu2770 -0.9 -4.0 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu8131 -0.8 -6.5 pH adaption potassium efflux system protein compare
Atu0658 -0.8 -5.2 phosphate permease compare
Atu5136 -0.8 -3.5 transcriptional repressor of the blcABC operon compare
Atu1062 -0.8 -1.6 phosphatidylserine synthase compare
Atu0946 -0.8 -4.8 dehydrogenase compare
Atu0141 -0.8 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0510 -0.8 -5.4 pH adaption potassium efflux system protein compare
Atu2207 -0.8 -1.5 two component sensor kinase compare
Atu8202 -0.8 -3.1 hypothetical protein compare
Atu3697 -0.7 -3.7 ATP-dependent protease LA 2 compare
Atu5125 -0.7 -2.6 GntR family transcriptional regulator compare
Atu2201 -0.7 -2.2 hydrolase compare
Atu1457 -0.7 -1.8 hypothetical protein compare
Atu1325 -0.7 -1.1 acetyltransferase compare
Atu0149 -0.7 -2.5 enoyl-(acyl-carrier-protein) reductase compare
Atu0972 -0.7 -3.2 lipA protein compare
Atu2433 -0.7 -1.3 hypothetical protein compare
Atu0508 -0.7 -2.9 PH Adaption potassium efflux system compare
Atu0638 -0.7 -1.5 hypothetical protein compare
Atu3461 -0.7 -1.5 GntR family transcriptional regulator compare
Atu0770 -0.7 -3.9 cytochrome C oxidase assembly protein compare
Atu2442 -0.7 -2.1 hypothetical protein compare
Atu1445 -0.7 -2.9 two component sensor kinase compare
Atu3496 -0.7 -1.9 hypothetical protein compare
Atu0101 -0.7 -2.7 cytochrome c compare
Atu2803 -0.7 -3.1 Cobalamin biosynthesis associated protein compare
Atu0767 -0.7 -3.1 cytochrome c oxidase subunit II compare
Atu1078 -0.7 -1.9 hypothetical protein compare
Atu0768 -0.7 -4.7 cytochrome-c oxidase chain I compare
Atu8053 -0.7 -1.8 hypothetical protein compare
Atu2245 -0.7 -4.9 Na+/Pi-cotransporter compare
Atu0771 -0.7 -3.1 cytochrome c oxidase subunit III compare
Atu8099 -0.6 -1.3 hypothetical protein compare
Atu1285 -0.6 -3.3 metal dependent hydrolase compare
Atu0947 -0.6 -2.6 transcriptional regulator, AsnC family compare
Atu4685 -0.6 -4.4 LacI family transcriptional regulator compare
Atu4617 -0.6 -3.4 dTDP-D-glucose-4,6-dehydratase compare
Atu4674 -0.6 -3.4 GntR family transcriptional regulator compare
Atu3623 -0.6 -3.3 DnaJ family molecular chaperone compare
Atu3878 -0.6 -4.6 transcriptional regulator compare
Atu3613 -0.6 -3.0 hypothetical protein compare
Atu2183 -0.6 -3.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4890 -0.6 -1.4 IS426 transposase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Glucose in Agrobacterium fabrum C58

For carbon source D-Glucose across organisms