Experiment set1IT051 for Rhizobium sp. OAE497

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19050 -6.9 -4.8 3-isopropylmalate dehydrogenase compare
ABIE40_RS18920 -6.9 -4.8 glutamate 5-kinase compare
ABIE40_RS19355 -6.9 -4.7 thioredoxin compare
ABIE40_RS18590 -6.8 -6.6 homoserine O-succinyltransferase compare
ABIE40_RS11950 -6.6 -4.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS02340 -6.6 -9.0 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS00245 -6.5 -7.8 prephenate dehydratase compare
ABIE40_RS18575 -6.5 -6.4 SIS domain-containing protein compare
ABIE40_RS18380 -6.5 -7.8 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS18570 -6.2 -4.3 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE40_RS19040 -6.2 -4.3 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS17525 -6.1 -3.5 lipoprotein compare
ABIE40_RS13330 -6.1 -8.3 2-isopropylmalate synthase compare
ABIE40_RS09150 -6.0 -14.5 nitrite/sulfite reductase compare
ABIE40_RS09095 -5.8 -4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS18775 -5.6 -14.6 pyruvate carboxylase compare
ABIE40_RS09660 -5.6 -10.8 AI-2E family transporter compare
ABIE40_RS09545 -5.5 -3.7 anthranilate phosphoribosyltransferase compare
ABIE40_RS16320 -5.3 -3.7 histidinol-phosphatase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS20460 -5.2 -3.6 precorrin-3B synthase compare
ABIE40_RS10725 -5.2 -3.6 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS02725 -5.2 -3.6 histidinol dehydrogenase compare
ABIE40_RS17530 -5.2 -5.0 diaminopimelate decarboxylase compare
ABIE40_RS09155 -5.1 -6.1 DUF934 domain-containing protein compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -5.1 -2.9 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS11150 -5.0 -6.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS10720 -5.0 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.9 -3.4 cobyrinate a,c-diamide synthase compare
ABIE40_RS11175 -4.8 -3.3 cobyric acid synthase compare
ABIE40_RS09725 -4.8 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS06930 -4.8 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS10180 -4.7 -3.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS06560 -4.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS08635 -4.7 -11.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS18925 -4.7 -4.6 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS19440 -4.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS13410 -4.7 -3.2 anthranilate synthase compare
ABIE40_RS19330 -4.7 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS19460 -4.7 -4.5 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS12925 -4.7 -11.6 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS02325 -4.7 -4.5 ornithine carbamoyltransferase compare
ABIE40_RS20440 -4.6 -3.2 cobalt-precorrin-6A reductase compare
ABIE40_RS11165 -4.6 -3.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS09360 -4.6 -3.2 excinuclease ABC subunit UvrA compare
ABIE40_RS17650 -4.6 -3.2 cobaltochelatase subunit CobS compare
ABIE40_RS20435 -4.6 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS16070 -4.5 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS11095 -4.4 -3.1 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS11495 -4.4 -4.3 acetolactate synthase 3 large subunit compare
ABIE40_RS01970 -4.4 -4.1 acetylglutamate kinase compare
ABIE40_RS17595 -4.3 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS19450 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS08140 -4.3 -16.0 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS20455 -4.3 -2.4 precorrin-8X methylmutase compare
ABIE40_RS20430 -4.2 -2.9 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS06555 -4.1 -3.1 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS19130 -4.1 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20465 -4.1 -2.8 precorrin-6A synthase (deacetylating) compare
ABIE40_RS12100 -4.0 -12.9 sugar ABC transporter permease compare
ABIE40_RS08005 -4.0 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS14985 -4.0 -2.6 glycosyltransferase compare
ABIE40_RS06270 -4.0 -9.2 amidophosphoribosyltransferase compare
ABIE40_RS12135 -4.0 -2.7 methionine synthase compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS12085 -3.9 -13.3 ATP-binding cassette domain-containing protein compare
ABIE40_RS19445 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS20450 -3.9 -4.3 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS12095 -3.8 -10.1 carbohydrate ABC transporter permease compare
ABIE40_RS17645 -3.8 -2.6 cobaltochelatase subunit CobT compare
ABIE40_RS11155 -3.8 -8.1 cobaltochelatase subunit CobN compare
ABIE40_RS14980 -3.7 -5.0 glycoside hydrolase family 16 protein compare
ABIE40_RS19480 -3.7 -2.5 DUF1402 family protein compare
ABIE40_RS15345 -3.7 -10.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS00725 -3.6 -4.9 DNA cytosine methyltransferase compare
ABIE40_RS05430 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE40_RS18720 -3.6 -2.4 polyprenyl synthetase family protein compare
ABIE40_RS19700 -3.5 -2.4 MBL fold metallo-hydrolase compare
ABIE40_RS12360 -3.5 -12.6 DUF5131 family protein compare
ABIE40_RS14990 -3.5 -13.3 glycosyltransferase family 2 protein compare
ABIE40_RS18565 -3.4 -13.3 SIS domain-containing protein compare
ABIE40_RS17590 -3.4 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS10155 -3.4 -2.2 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS02320 -3.4 -6.8 aspartate aminotransferase family protein compare
ABIE40_RS12105 -3.3 -13.3 ABC transporter substrate-binding protein compare
ABIE40_RS20445 -3.3 -1.6 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS00930 -3.2 -8.3 ABC transporter permease compare
ABIE40_RS19260 -3.2 -3.1 DNA polymerase III subunit epsilon compare
ABIE40_RS19645 -3.2 -14.0 acyltransferase compare
ABIE40_RS09090 -3.1 -9.0 nitrogen regulation protein NR(I) compare
ABIE40_RS10345 -3.1 -6.5 RNA polymerase-binding protein DksA compare
ABIE40_RS05155 -3.1 -6.2 DUF5330 domain-containing protein compare
ABIE40_RS12090 -3.1 -14.9 Gfo/Idh/MocA family oxidoreductase compare
ABIE40_RS04475 -3.1 -13.1 phosphoadenylyl-sulfate reductase compare
ABIE40_RS09140 -3.1 -7.3 siroheme synthase CysG compare
ABIE40_RS08645 -3.0 -7.5 LL-diaminopimelate aminotransferase compare
ABIE40_RS00580 -2.9 -3.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS18580 -2.8 -3.9 GntR family transcriptional regulator compare
ABIE40_RS06050 -2.8 -6.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS00935 -2.8 -6.9 ABC transporter substrate-binding protein compare
ABIE40_RS01765 -2.8 -6.5 [protein-PII] uridylyltransferase compare
ABIE40_RS04470 -2.7 -13.9 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS03190 -2.7 -5.6 phosphogluconate dehydratase compare
ABIE40_RS03815 -2.6 -2.5 DUF6101 family protein compare
ABIE40_RS18055 -2.6 -4.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS04465 -2.6 -13.9 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS16170 -2.5 -3.2 DUF882 domain-containing protein compare
ABIE40_RS03485 -2.5 -12.2 MAPEG family protein compare
ABIE40_RS13370 -2.5 -11.7 CDF family cation efflux transporter EmfA compare
ABIE40_RS09720 -2.4 -4.6 GTP cyclohydrolase I FolE compare
ABIE40_RS19385 -2.4 -8.7 adenosylhomocysteinase compare
ABIE40_RS06730 -2.3 -3.9 riboflavin synthase compare
ABIE40_RS09540 -2.3 -5.1 peptidylprolyl isomerase compare
ABIE40_RS13130 -2.3 -9.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS09145 -2.3 -5.6 DUF2849 domain-containing protein compare
ABIE40_RS00625 -2.3 -10.3 ABC transporter permease compare
ABIE40_RS04215 -2.2 -2.8 sensor domain-containing phosphodiesterase compare
ABIE40_RS00630 -2.2 -8.8 ABC transporter ATP-binding protein compare
ABIE40_RS18285 -2.2 -4.3 heme exporter protein CcmB compare
ABIE40_RS14955 -2.2 -7.8 sugar transferase compare
ABIE40_RS05660 -2.2 -3.1 response regulator transcription factor compare
ABIE40_RS13120 -2.2 -10.8 cytochrome c1 compare
ABIE40_RS07200 -2.2 -2.4 NADH-quinone oxidoreductase subunit E compare
ABIE40_RS18880 -2.2 -9.6 UDP-glucose 4-epimerase GalE compare
ABIE40_RS25740 -2.1 -7.9 FadR/GntR family transcriptional regulator compare
ABIE40_RS19395 -2.1 -2.5 PTS sugar transporter subunit IIA compare
ABIE40_RS08425 -2.1 -3.1 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS25155 -2.1 -11.9 S-methyl-5-thioribose-1-phosphate isomerase compare
ABIE40_RS28815 -2.1 -6.7 GNAT family N-acetyltransferase compare
ABIE40_RS07475 -2.1 -1.9 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
ABIE40_RS09945 -2.1 -7.5 glycine cleavage system protein GcvH compare
ABIE40_RS16655 -2.1 -5.6 creatininase family protein compare
ABIE40_RS12845 -2.1 -3.6 glycosyltransferase family 4 protein compare
ABIE40_RS06725 -2.1 -6.3 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS09170 -2.1 -5.2 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS05685 -2.0 -9.6 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS18300 -2.0 -6.6 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS00620 -2.0 -8.5 microcin C ABC transporter permease YejB compare
ABIE40_RS18970 -2.0 -3.7 murein hydrolase activator EnvC compare
ABIE40_RS00490 -2.0 -9.7 DNA polymerase I compare
ABIE40_RS13125 -2.0 -12.2 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS10140 -2.0 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS09320 -2.0 -11.8 extracellular solute-binding protein compare
ABIE40_RS08935 -1.9 -3.3 RIP metalloprotease RseP compare
ABIE40_RS14785 -1.9 -3.7 hypothetical protein compare
ABIE40_RS08970 -1.9 -7.8 citrate synthase compare
ABIE40_RS06775 -1.9 -3.9 DUF177 domain-containing protein compare
ABIE40_RS27250 -1.9 -2.0 hypothetical protein compare
ABIE40_RS10425 -1.9 -5.2 ABC transporter ATP-binding protein compare
ABIE40_RS15760 -1.8 -5.6 Holliday junction branch migration DNA helicase RuvB compare
ABIE40_RS02590 -1.8 -9.6 FAD-dependent oxidoreductase compare
ABIE40_RS16390 -1.8 -1.2 hypothetical protein compare
ABIE40_RS04070 -1.8 -4.5 heme o synthase compare
ABIE40_RS06700 -1.8 -2.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS06220 -1.8 -11.0 citramalate synthase compare
ABIE40_RS19360 -1.8 -3.5 double-strand break repair helicase AddA compare
ABIE40_RS05680 -1.7 -6.0 cytochrome c maturation protein CcmE compare
ABIE40_RS11060 -1.7 -3.4 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS17585 -1.7 -4.4 DUF2125 domain-containing protein compare
ABIE40_RS09940 -1.7 -9.4 glycine cleavage system aminomethyltransferase GcvT compare
ABIE40_RS30285 -1.7 -1.0 co-chaperone GroES compare
ABIE40_RS10200 -1.7 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS18290 -1.6 -8.3 heme ABC transporter permease compare
ABIE40_RS22300 -1.6 -3.9 superoxide dismutase compare
ABIE40_RS11960 -1.6 -2.3 energy-dependent translational throttle protein EttA compare
ABIE40_RS05665 -1.6 -2.5 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS09950 -1.6 -9.7 aminomethyl-transferring glycine dehydrogenase compare
ABIE40_RS06710 -1.6 -3.4 L,D-transpeptidase family protein compare
ABIE40_RS04085 -1.6 -6.9 cytochrome c oxidase subunit 3 compare
ABIE40_RS09085 -1.6 -4.9 nitrogen regulation protein NR(II) compare
ABIE40_RS02580 -1.6 -10.2 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS05690 -1.6 -2.6 cytochrome c-type biogenesis protein compare
ABIE40_RS12110 -1.6 -5.7 BadF/BadG/BcrA/BcrD ATPase family protein compare
ABIE40_RS20905 -1.5 -4.9 IclR family transcriptional regulator compare
ABIE40_RS10430 -1.5 -8.1 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS18280 -1.5 -2.5 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS24310 -1.5 -5.8 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS10420 -1.5 -5.7 MCE family protein compare
ABIE40_RS04060 -1.5 -7.5 cytochrome c oxidase subunit II compare
ABIE40_RS30705 -1.5 -1.6 hypothetical protein compare
ABIE40_RS04065 -1.5 -8.4 cytochrome c oxidase subunit I compare
ABIE40_RS00925 -1.5 -3.8 ABC transporter permease compare
ABIE40_RS03515 -1.5 -3.0 glutamate--cysteine ligase compare
ABIE40_RS01930 -1.5 -1.3 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS08640 -1.4 -2.4 hypothetical protein compare
ABIE40_RS14455 -1.4 -2.1 NepR family anti-sigma factor compare
ABIE40_RS00450 -1.4 -3.9 molecular chaperone DnaJ compare
ABIE40_RS02585 -1.4 -8.0 acetyl-CoA C-acetyltransferase compare
ABIE40_RS17565 -1.4 -2.4 ABC transporter permease compare
ABIE40_RS15855 -1.4 -1.5 cell division protein ZapA compare
ABIE40_RS10415 -1.4 -6.4 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS19375 -1.4 -4.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
ABIE40_RS09425 -1.4 -3.5 peptidylprolyl isomerase compare
ABIE40_RS10390 -1.4 -2.1 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS16570 -1.4 -2.0 tetratricopeptide repeat protein compare
ABIE40_RS30895 -1.4 -0.9 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS19100 -1.3 -7.2 lytic transglycosylase domain-containing protein compare
ABIE40_RS17515 -1.3 -4.1 TlpA disulfide reductase family protein compare
ABIE40_RS18735 -1.3 -4.1 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Trehalose dihydrate in Rhizobium sp. OAE497

For carbon source D-Trehalose dihydrate across organisms