Experiment set1IT051 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with copper (II) chloride dihydrate 0.16 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_19005 +5.9 47.3 SusC/RagA family TonB-linked outer membrane protein compare
CA264_00015 +4.6 34.7 hypothetical protein compare
CA264_18060 +3.8 13.7 hypothetical protein compare
CA264_17560 +3.6 28.6 hypothetical protein compare
CA264_18055 +3.4 15.0 hypothetical protein compare
CA264_06580 +3.2 24.9 ABC-F family ATPase compare
CA264_05910 +3.1 10.2 RNA helicase compare
CA264_20905 +2.8 15.6 hypothetical protein compare
CA264_12490 +2.5 16.0 phosphohydrolase compare
CA264_20900 +2.5 11.7 hypothetical protein compare
CA264_03260 +2.4 10.5 MBL fold hydrolase compare
CA264_11620 +2.4 11.9 hypothetical protein compare
CA264_17320 +2.2 14.8 hypothetical protein compare
CA264_06345 +2.2 19.3 hypothetical protein compare
CA264_20060 +2.2 8.0 ribosome silencing factor RsfS compare
CA264_21600 +2.2 12.7 four-helix bundle copper-binding protein compare
CA264_17510 +2.1 11.6 pseudouridylate synthase compare
CA264_05535 +2.1 14.3 hypothetical protein compare
CA264_14350 +2.1 12.1 hemolysin compare
CA264_17080 +2.0 7.2 rRNA (cytidine-2'-O-)-methyltransferase compare
CA264_21605 +1.9 12.8 hypothetical protein compare
CA264_15005 +1.9 11.1 magnesium/cobalt efflux protein compare
CA264_00190 +1.9 14.2 RagB/SusD family nutrient uptake outer membrane protein compare
CA264_19010 +1.9 5.0 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_13100 +1.9 4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CA264_05185 +1.8 10.7 hypothetical protein compare
CA264_12310 +1.7 2.3 NifU family protein compare
CA264_15255 +1.6 11.7 alpha/beta hydrolase compare
CA264_14510 +1.6 13.4 hypothetical protein compare
CA264_16115 +1.6 2.7 hypothetical protein compare
CA264_21480 +1.6 9.1 hypothetical protein compare
CA264_20895 +1.6 4.1 hypothetical protein compare
CA264_17355 +1.5 10.9 ribonuclease R compare
CA264_18930 +1.5 8.0 RNA helicase compare
CA264_04590 +1.4 11.9 hypothetical protein compare
CA264_17530 +1.4 9.8 hemolysin compare
CA264_19615 +1.4 2.6 hypothetical protein compare
CA264_06585 +1.3 8.2 hypothetical protein compare
CA264_17680 +1.3 6.5 CoB--CoM heterodisulfide reductase compare
CA264_18860 +1.3 9.8 TIGR00374 family protein compare
CA264_15520 +1.3 6.0 hypothetical protein compare
CA264_21610 +1.3 6.5 hypothetical protein compare
CA264_20570 +1.3 3.3 inorganic pyrophosphatase compare
CA264_14690 +1.3 8.2 peptidase S41 compare
CA264_19090 +1.3 1.8 hypothetical protein compare
CA264_10910 +1.3 10.2 phytoene dehydrogenase compare
CA264_15880 +1.3 2.1 5-formyltetrahydrofolate cyclo-ligase compare
CA264_00185 +1.2 10.3 SusC/RagA family TonB-linked outer membrane protein compare
CA264_04570 +1.2 9.6 undecaprenyl-phosphate glucose phosphotransferase compare
CA264_14180 +1.2 7.0 transcriptional regulator compare
CA264_14560 +1.2 2.4 VanZ family protein compare
CA264_03265 +1.2 8.9 N-acyl-D-amino acid deacylase compare
CA264_19450 +1.2 6.8 type I methionyl aminopeptidase compare
CA264_04835 +1.1 8.8 ABC transporter ATP-binding protein compare
CA264_05640 +1.1 8.1 transporter compare
CA264_01265 +1.1 2.9 50S ribosomal protein L9 compare
CA264_07800 +1.1 6.2 hypothetical protein compare
CA264_20890 +1.0 5.4 hypothetical protein compare
CA264_18770 +1.0 3.4 hypothetical protein compare
CA264_14135 +1.0 6.8 ATP-dependent chaperone ClpB compare
CA264_17875 +1.0 3.4 amino acid dehydrogenase compare
CA264_21055 +1.0 8.7 CusA/CzcA family heavy metal efflux RND transporter compare
CA264_08105 +1.0 5.4 NupC/NupG family nucleoside CNT transporter compare
CA264_14505 +1.0 7.3 hypothetical protein compare
CA264_07835 +1.0 6.6 RNA methyltransferase compare
CA264_05190 +1.0 2.6 hypothetical protein compare
CA264_21380 +1.0 3.1 hypothetical protein compare
CA264_06285 +1.0 1.8 N-acetyltransferase compare
CA264_09285 +1.0 3.1 anti-anti-sigma factor compare
CA264_17675 +1.0 6.7 Fe-S oxidoreductase compare
CA264_17575 +1.0 3.9 hypothetical protein compare
CA264_03270 +1.0 4.1 hypothetical protein compare
CA264_08925 +1.0 7.3 23S rRNA pseudouridine synthase F compare
CA264_18220 +1.0 3.8 acylphosphatase compare
CA264_04610 +0.9 7.2 chain length determinant protein compare
CA264_00140 +0.9 3.9 hypothetical protein compare
CA264_14200 +0.9 1.5 NADH-quinone oxidoreductase subunit A compare
CA264_13675 +0.9 6.3 GntR family transcriptional regulator compare
CA264_05575 +0.9 6.6 hypothetical protein compare
CA264_09330 +0.9 4.6 cold-shock protein compare
CA264_00245 +0.9 3.3 hypothetical protein compare
CA264_05180 +0.9 7.0 hypothetical protein compare
CA264_21060 +0.9 6.8 hypothetical protein compare
CA264_09185 +0.9 3.9 hypothetical protein compare
CA264_15340 +0.9 3.8 hypothetical protein compare
CA264_21250 +0.9 4.5 hypothetical protein compare
CA264_07785 +0.9 5.1 hypothetical protein compare
CA264_15650 +0.8 2.9 hypothetical protein compare
CA264_21615 +0.8 2.6 hypothetical protein compare
CA264_20070 +0.8 4.6 hypothetical protein compare
CA264_06475 +0.8 1.1 hypothetical protein compare
CA264_03470 +0.8 3.5 short-chain dehydrogenase compare
CA264_20760 +0.8 5.0 hypothetical protein compare
CA264_16055 +0.8 4.1 hypothetical protein compare
CA264_21430 +0.8 3.1 DDE transposase compare
CA264_06600 +0.8 5.5 glycosyltransferase compare
CA264_21630 +0.8 2.4 hypothetical protein compare
CA264_20755 +0.8 5.9 hypothetical protein compare
CA264_05635 +0.8 5.5 efflux transporter periplasmic adaptor subunit compare
CA264_06290 +0.8 4.0 amino-acid racemase compare
CA264_10955 +0.8 1.8 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_01985 +0.8 1.1 tRNA-Lys compare
CA264_20310 +0.8 3.1 TVP38/TMEM64 family protein compare
CA264_07130 +0.8 6.5 hypothetical protein compare
CA264_03475 +0.8 2.4 oxidoreductase compare
CA264_07185 +0.7 4.2 TetR family transcriptional regulator compare
CA264_13080 +0.7 2.3 aminodeoxychorismate lyase compare
CA264_07150 +0.7 3.5 elongation factor 4 compare
CA264_06470 +0.7 2.6 YfcE family phosphodiesterase compare
CA264_15055 +0.7 4.3 MarR family transcriptional regulator compare
CA264_04415 +0.7 1.6 hypothetical protein compare
CA264_21370 +0.7 5.4 hypothetical protein compare
CA264_06250 +0.7 3.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
CA264_01725 +0.7 2.7 NADH-quinone oxidoreductase subunit K compare
CA264_05320 +0.7 3.9 para-aminobenzoate synthase compare
CA264_19540 +0.7 5.2 hypothetical protein compare
CA264_04970 +0.7 4.8 tRNA (guanine(46)-N(7))-methyltransferase compare
CA264_20490 +0.7 1.2 hypothetical protein compare
CA264_05325 +0.7 4.9 hypothetical protein compare
CA264_01595 +0.7 2.2 hypothetical protein compare
CA264_15070 +0.7 3.3 cytochrome b5 compare
CA264_13765 +0.7 3.1 DNA-binding transcriptional regulator OxyR compare
CA264_01715 +0.7 1.7 4Fe-4S ferredoxin compare
CA264_15680 +0.7 2.6 hypothetical protein compare
CA264_19535 +0.7 3.6 hypothetical protein compare
CA264_01940 +0.7 2.5 antibiotic biosynthesis monooxygenase compare
CA264_16195 +0.7 3.3 hypothetical protein compare
CA264_18345 +0.7 1.0 hypothetical protein compare
CA264_00165 +0.7 4.0 macrolide ABC transporter ATP-binding protein compare
CA264_04640 +0.7 4.2 tRNA pseudouridine(55) synthase compare
CA264_06410 +0.7 4.0 YggS family pyridoxal phosphate enzyme compare
CA264_08015 +0.7 4.0 fructose-6-phosphate aldolase compare
CA264_14840 +0.7 6.0 hypothetical protein compare
CA264_15330 +0.7 5.7 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_08780 +0.7 5.0 hypothetical protein compare
CA264_18020 +0.7 1.5 ABC transporter permease compare
CA264_21305 +0.7 1.6 hypothetical protein compare
CA264_01585 +0.7 3.3 hypothetical protein compare
CA264_16130 +0.7 2.7 TetR family transcriptional regulator compare
CA264_17020 +0.7 2.8 methyltransferase type 11 compare
CA264_15325 +0.6 5.6 hypothetical protein compare
CA264_01935 +0.6 3.9 DNA-binding response regulator compare
CA264_17495 +0.6 2.9 hypothetical protein compare
CA264_03365 +0.6 2.0 hypothetical protein compare
CA264_03300 +0.6 2.2 hypothetical protein compare
CA264_01805 +0.6 1.4 6-phosphogluconate dehydrogenase (decarboxylating) compare
CA264_05065 +0.6 4.4 anthranilate phosphoribosyltransferase compare
CA264_08110 +0.6 3.2 hypothetical protein compare
CA264_05060 +0.6 2.2 glutamine amidotransferase compare
CA264_08820 +0.6 4.8 histidine phosphatase family protein compare
CA264_11695 +0.6 2.9 cell filamentation protein Fic compare
CA264_16260 +0.6 2.5 transcriptional regulator AsnC compare
CA264_19085 +0.6 3.8 RNA polymerase subunit sigma-24 compare
CA264_21620 +0.6 3.9 hypothetical protein compare
CA264_01705 +0.6 3.9 NADH-quinone oxidoreductase subunit H compare
CA264_07295 +0.6 2.1 helix-turn-helix transcriptional regulator compare
CA264_04670 +0.6 2.8 hypothetical protein compare
CA264_19175 +0.6 4.2 hypothetical protein compare
CA264_15280 +0.6 4.4 tRNA 2-selenouridine synthase compare
CA264_05075 +0.6 3.2 hypothetical protein compare
CA264_20355 +0.6 2.6 DUF421 domain-containing protein compare
CA264_18450 +0.6 3.8 aspartate ammonia-lyase compare
CA264_02945 +0.6 1.6 hypothetical protein compare
CA264_21625 +0.6 4.5 hypothetical protein compare
CA264_08120 +0.6 3.9 electron transfer flavoprotein subunit alpha compare
CA264_21125 +0.6 2.9 hypothetical protein compare
CA264_15400 +0.6 2.2 short-chain dehydrogenase compare
CA264_20075 +0.6 3.9 hypothetical protein compare
CA264_03225 +0.6 2.4 hypothetical protein compare
CA264_00960 +0.6 4.3 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
CA264_16140 +0.6 3.1 efflux transporter periplasmic adaptor subunit compare
CA264_02180 +0.6 1.4 response regulator compare
CA264_18675 +0.6 2.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
CA264_00865 +0.6 2.2 dihydroorotate dehydrogenase (quinone) compare
CA264_14355 +0.6 2.6 hypothetical protein compare
CA264_21300 +0.6 1.1 hypothetical protein compare
CA264_13770 +0.6 1.7 DNA starvation/stationary phase protection protein compare
CA264_08115 +0.6 3.2 electron transfer flavoprotein subunit alpha compare
CA264_05360 +0.6 3.3 ABC transporter compare
CA264_20520 +0.6 2.3 hypothetical protein compare
CA264_04575 +0.6 5.0 glycosyltransferase compare
CA264_00135 +0.6 2.1 transcriptional regulator compare
CA264_04385 +0.6 1.9 hypothetical protein compare
CA264_15035 +0.6 3.8 acyl-CoA dehydrogenase compare
CA264_13650 +0.6 1.0 hypothetical protein compare
CA264_10930 +0.6 2.2 methylglutaconyl-CoA hydratase compare
CA264_15375 +0.6 3.5 EamA family transporter compare
CA264_21245 +0.6 2.3 hypothetical protein compare
CA264_15290 +0.6 4.1 alpha/beta hydrolase compare
CA264_15040 +0.6 3.9 four helix bundle protein compare
CA264_20125 +0.6 2.1 hypothetical protein compare
CA264_19545 +0.5 2.3 oxidoreductase compare
CA264_06645 +0.5 3.3 hypothetical protein compare
CA264_06200 +0.5 3.5 N-formylglutamate amidohydrolase compare
CA264_15095 +0.5 1.9 hypothetical protein compare
CA264_18775 +0.5 0.4 hypothetical protein compare
CA264_20235 +0.5 1.6 transcriptional regulator compare
CA264_12655 +0.5 3.2 DNA-binding response regulator compare
CA264_18845 +0.5 3.8 alpha/beta hydrolase compare
CA264_17170 +0.5 3.5 N-acetyltransferase compare


Specific Phenotypes

For 42 genes in this experiment

For stress copper (II) chloride dihydrate in Pontibacter actiniarum KMM 6156, DSM 19842

For stress copper (II) chloride dihydrate across organisms