Experiment set1IT051 for Serratia liquefaciens MT49

Compare to:

copper (II) chloride dihydrate 15 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI46_25195 -3.0 -2.1 phosphate signaling complex protein PhoU compare
IAI46_03840 -3.0 -4.5 recombinase RecA compare
IAI46_20730 -2.5 -2.9 site-specific tyrosine recombinase XerD compare
IAI46_23690 -2.4 -2.3 adenine-specific DNA-methyltransferase compare
IAI46_21325 -2.4 -3.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_24750 -2.4 -3.5 glycosyltransferase compare
IAI46_02940 -2.2 -8.6 phosphoserine phosphatase compare
IAI46_20900 -2.2 -8.1 phosphoglycerate dehydrogenase compare
IAI46_00725 -2.1 -2.4 tyrosine recombinase XerC compare
IAI46_25110 -2.1 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_24770 -2.0 -4.4 polysaccharide deacetylase family protein compare
IAI46_18025 -2.0 -5.4 chorismate synthase compare
IAI46_09740 -1.9 -5.2 dihydroorotase compare
IAI46_00735 -1.9 -8.0 DNA helicase II compare
IAI46_06505 -1.9 -2.9 6-phosphogluconolactonase compare
IAI46_24665 -1.9 -5.2 envelope stress sensor histidine kinase CpxA compare
IAI46_19600 -1.9 -6.2 ATP-dependent RNA helicase SrmB compare
IAI46_23205 -1.9 -1.8 5S ribosomal RNA compare
IAI46_17810 -1.9 -10.1 amidophosphoribosyltransferase compare
IAI46_03190 -1.9 -9.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_08635 -1.8 -5.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_05375 -1.8 -2.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_17680 -1.8 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
IAI46_03195 -1.8 -11.2 carbamoyl-phosphate synthase large subunit compare
IAI46_24760 -1.8 -4.3 glycosyltransferase compare
IAI46_21210 -1.8 -4.3 RNA polymerase-binding protein DksA compare
IAI46_08640 -1.8 -7.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_07070 -1.7 -3.3 TetR/AcrR family transcriptional regulator compare
IAI46_03600 -1.7 -10.5 GTP diphosphokinase compare
IAI46_19560 -1.7 -5.4 elongation factor 4 compare
IAI46_01365 -1.7 -11.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_01360 -1.6 -9.9 phosphoribosylamine--glycine ligase compare
IAI46_24950 -1.6 -1.1 glutamate--ammonia ligase compare
IAI46_20455 -1.6 -2.1 RNA pyrophosphohydrolase compare
IAI46_23700 -1.6 -4.7 3-dehydroquinate synthase compare
IAI46_18465 -1.5 -1.4 PTS glucose transporter subunit IIA compare
IAI46_05370 -1.5 -3.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_24960 -1.5 -6.0 nitrogen regulation protein NR(I) compare
IAI46_22855 -1.5 -2.3 DUF1471 domain-containing protein compare
IAI46_24845 -1.5 -7.3 orotate phosphoribosyltransferase compare
IAI46_19475 -1.5 -10.5 phosphoribosylformylglycinamidine synthase compare
IAI46_24755 -1.5 -6.7 O-antigen ligase family protein compare
IAI46_13915 -1.5 -3.0 orotidine-5'-phosphate decarboxylase compare
IAI46_24985 -1.4 -6.2 DNA polymerase I compare
IAI46_08805 -1.4 -4.9 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_11485 -1.4 -2.9 electron transport complex subunit RsxB compare
IAI46_24945 -1.4 -2.1 ribosome-dependent GTPase TypA compare
IAI46_17665 -1.4 -2.0 NADH-quinone oxidoreductase subunit NuoK compare
IAI46_11340 -1.4 -2.1 transcriptional regulator SlyA compare
IAI46_10025 -1.4 -2.6 DUF4377 domain-containing protein compare
IAI46_11030 -1.3 -1.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI46_08130 -1.3 -2.0 ABC transporter ATP-binding protein compare
IAI46_01745 -1.3 -2.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI46_23240 -1.3 -4.1 shikimate dehydrogenase compare
IAI46_02320 -1.3 -4.2 ornithine carbamoyltransferase compare
IAI46_14650 -1.3 -1.9 zinc ribbon domain-containing protein compare
IAI46_08530 -1.3 -2.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_18770 -1.3 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_04430 -1.3 -5.6 glutamate 5-kinase compare
IAI46_18745 -1.3 -5.1 M15 family metallopeptidase compare
IAI46_19260 -1.3 -3.5 outer membrane protein assembly factor BamB compare
IAI46_11100 -1.3 -3.7 glutathione peroxidase compare
IAI46_06645 -1.2 -3.0 D-2-hydroxyacid dehydrogenase family protein compare
IAI46_02275 -1.2 -4.3 aspartate carbamoyltransferase compare
IAI46_05015 -1.2 -4.1 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_03235 -1.2 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI46_03035 -1.2 -7.6 homoserine kinase compare
IAI46_13935 -1.2 -1.8 LapA family protein compare
IAI46_24955 -1.2 -4.8 nitrogen regulation protein NR(II) compare
IAI46_18885 -1.2 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_23685 -1.2 -1.7 ribulose-phosphate 3-epimerase compare
IAI46_10795 -1.1 -2.3 RNA chaperone ProQ compare
IAI46_23630 -1.1 -1.3 PTS lactose/cellobiose transporter subunit IIA compare
IAI46_24505 -1.1 -7.5 argininosuccinate synthase compare
IAI46_22470 -1.1 -0.7 RNA polymerase factor sigma-54 compare
IAI46_24500 -1.1 -6.0 argininosuccinate lyase compare
IAI46_20270 -1.1 -1.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_01940 -1.1 -1.3 30S ribosome-binding factor RbfA compare
IAI46_17000 -1.1 -2.3 citrate lyase acyl carrier protein compare
IAI46_08200 -1.1 -3.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI46_05010 -1.1 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
IAI46_03040 -1.1 -4.9 threonine synthase compare
IAI46_01970 -1.1 -2.6 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_02875 -1.0 -5.2 peptide chain release factor 3 compare
IAI46_09650 -1.0 -1.7 YeeE/YedE family protein compare
IAI46_03960 -1.0 -7.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
IAI46_14060 -1.0 -2.1 YkgJ family cysteine cluster protein compare
IAI46_25250 -1.0 -2.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_21415 -1.0 -4.7 pyrroline-5-carboxylate reductase compare
IAI46_19580 -1.0 -2.0 anti-sigma-E factor RseA compare
IAI46_14170 -0.9 -1.8 DUF1937 family protein compare
IAI46_17450 -0.9 -3.0 transcriptional regulator RcsB compare
IAI46_03985 -0.9 -5.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_24510 -0.9 -6.6 acetylglutamate kinase compare
IAI46_22480 -0.9 -1.3 PTS IIA-like nitrogen regulatory protein PtsN compare
IAI46_18460 -0.9 -3.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_13920 -0.9 -1.4 DUF1471 domain-containing protein compare
IAI46_14050 -0.9 -2.5 BON domain-containing protein compare
IAI46_01620 -0.9 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_10730 -0.9 -1.3 hypothetical protein compare
IAI46_24515 -0.9 -4.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI46_04435 -0.9 -5.0 glutamate-5-semialdehyde dehydrogenase compare
IAI46_07500 -0.9 -2.4 DUF1471 domain-containing protein compare
IAI46_22745 -0.9 -1.1 type II 3-dehydroquinate dehydratase compare
IAI46_18890 -0.9 -2.9 phosphoribosylglycinamide formyltransferase compare
IAI46_11305 -0.9 -1.5 DUF1289 domain-containing protein compare
IAI46_08020 -0.9 -4.2 tyrosine-protein kinase Wzc compare
IAI46_24690 -0.8 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_11930 -0.8 -0.7 AprI/Inh family metalloprotease inhibitor compare
IAI46_24975 -0.8 -1.9 Der GTPase-activating protein YihI compare
IAI46_09645 -0.8 -2.1 YeeE/YedE family protein compare
IAI46_00605 -0.8 -1.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI46_12585 -0.8 -1.9 hypothetical protein compare
IAI46_09505 -0.8 -1.7 hypothetical protein compare
IAI46_13205 -0.8 -1.4 carbohydrate ABC transporter permease compare
IAI46_07415 -0.8 -2.2 GNAT family N-acetyltransferase compare
IAI46_03025 -0.8 -1.6 thr operon leader peptide compare
IAI46_08185 -0.8 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_14105 -0.8 -1.3 TonB system transport protein TonB compare
IAI46_24525 -0.8 -5.3 phosphoenolpyruvate carboxylase compare
IAI46_06275 -0.8 -1.7 2-oxoglutarate dehydrogenase E1 component compare
IAI46_18915 -0.8 -4.6 polyphosphate kinase 1 compare
IAI46_24905 -0.8 -4.4 ATP-dependent DNA helicase RecG compare
IAI46_17670 -0.8 -1.5 NADH-quinone oxidoreductase subunit J compare
IAI46_23090 -0.8 -6.2 glucose-6-phosphate isomerase compare
IAI46_16270 -0.8 -1.5 hypothetical protein compare
IAI46_10825 -0.8 -2.7 phosphonate utilization transcriptional regulator PhnR compare
IAI46_20215 -0.8 -1.7 molecular chaperone Skp compare
IAI46_10800 -0.8 -3.5 carboxy terminal-processing peptidase compare
IAI46_17390 -0.8 -2.3 osmotically-inducible lipoprotein OsmE compare
IAI46_17650 -0.8 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI46_17140 -0.8 -2.4 hypothetical protein compare
IAI46_19880 -0.8 -3.5 DUF883 domain-containing protein compare
IAI46_13895 -0.8 -2.6 DeoR/GlpR transcriptional regulator compare
IAI46_08190 -0.7 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI46_08210 -0.7 -3.3 histidinol dehydrogenase compare
IAI46_07695 -0.7 -2.8 pentapeptide MXKDX repeat protein compare
IAI46_17115 -0.7 -2.3 DUF496 family protein compare
IAI46_14610 -0.7 -1.1 zinc ABC transporter ATP-binding protein ZnuC compare
IAI46_04630 -0.7 -2.8 methyltransferase compare
IAI46_24520 -0.7 -4.9 acetylornithine deacetylase compare
IAI46_12420 -0.7 -1.9 aldehyde dehydrogenase family protein compare
IAI46_01200 -0.7 -0.8 tRNA-Thr compare
IAI46_11265 -0.7 -1.3 ribonuclease T compare
IAI46_22450 -0.7 -1.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI46_01960 -0.7 -4.4 lipoprotein NlpI compare
IAI46_12805 -0.7 -1.0 protocatechuate 3,4-dioxygenase subunit alpha compare
IAI46_11540 -0.7 -2.5 adenosine deaminase compare
IAI46_12455 -0.7 -1.4 FCD domain-containing protein compare
IAI46_24645 -0.7 -3.4 6-phosphofructokinase compare
IAI46_08215 -0.7 -2.8 ATP phosphoribosyltransferase compare
IAI46_02435 -0.7 -1.7 hypothetical protein compare
IAI46_00610 -0.7 -0.9 dTDP-glucose 4,6-dehydratase compare
IAI46_19295 -0.7 -1.7 nucleoside-diphosphate kinase compare
IAI46_11385 -0.7 -2.3 glutathione transferase GstA compare
IAI46_06185 -0.7 -1.8 K(+)-transporting ATPase subunit F compare
IAI46_01665 -0.7 -3.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
IAI46_01345 -0.7 -3.3 YjaG family protein compare
IAI46_01955 -0.7 -3.8 polyribonucleotide nucleotidyltransferase compare
IAI46_16300 -0.7 -1.0 DUF937 domain-containing protein compare
IAI46_24775 -0.7 -3.5 putative lipopolysaccharide heptosyltransferase III compare
IAI46_00160 -0.7 -3.0 mannitol-1-phosphate 5-dehydrogenase compare
IAI46_12305 -0.7 -1.3 hypothetical protein compare
IAI46_11440 -0.7 -1.7 helix-turn-helix transcriptional regulator compare
IAI46_13175 -0.6 -1.4 flagellar brake protein compare
IAI46_05025 -0.6 -1.2 DNA-binding protein HU-beta compare
IAI46_04935 -0.6 -1.0 exodeoxyribonuclease VII small subunit compare
IAI46_07290 -0.6 -1.1 NUDIX hydrolase compare
IAI46_24695 -0.6 -2.9 protein-export chaperone SecB compare
IAI46_19265 -0.6 -1.7 YfgM family protein compare
IAI46_08235 -0.6 -1.0 agmatinase compare
IAI46_14200 -0.6 -2.3 oligopeptide ABC transporter permease OppB compare
IAI46_20395 -0.6 -3.2 amino-acid N-acetyltransferase compare
IAI46_15090 -0.6 -2.0 hypothetical protein compare
IAI46_14775 -0.6 -2.3 YoaH family protein compare
IAI46_18055 -0.6 -2.8 YfcZ/YiiS family protein compare
IAI46_08385 -0.6 -1.9 putrescine ABC transporter permease PotI compare
IAI46_05780 -0.6 -2.9 fumarylacetoacetate hydrolase family protein compare
IAI46_22990 -0.6 -3.0 zinc uptake transcriptional repressor Zur compare
IAI46_20305 -0.6 -2.2 YqcC family protein compare
IAI46_05350 -0.6 -1.0 ABC transporter ATP-binding protein compare
IAI46_16255 -0.6 -2.2 protein DsrB compare
IAI46_01685 -0.6 -2.2 biofilm peroxide resistance protein BsmA compare
IAI46_07440 -0.6 -2.7 tautomerase family protein compare
IAI46_22590 -0.6 -0.6 ribosome-associated protein compare
IAI46_20355 -0.6 -1.7 cysteine desulfurase sulfur acceptor subunit CsdE compare
IAI46_15310 -0.6 -2.8 porin OmpC compare
IAI46_17110 -0.6 -1.5 ABC transporter substrate-binding protein compare
IAI46_15850 -0.6 -1.2 flagellar assembly protein FliH compare
IAI46_08025 -0.6 -2.2 acylneuraminate cytidylyltransferase family protein compare
IAI46_12210 -0.6 -1.3 TIGR00645 family protein compare
IAI46_12390 -0.6 -1.7 heavy metal response regulator transcription factor compare
IAI46_05500 -0.6 -2.1 fimbrial protein compare
IAI46_11815 -0.6 -1.1 Asp/Glu racemase compare
IAI46_03300 -0.6 -2.9 ilvB operon leader peptide IvbL compare
IAI46_24385 -0.6 -3.8 HTH-type transcriptional regulator HdfR compare
IAI46_08555 -0.6 -3.0 leucine-responsive transcriptional regulator Lrp compare
IAI46_04530 -0.6 -1.0 DUF2501 domain-containing protein compare
IAI46_10655 -0.6 -1.3 hydrolase compare
IAI46_10945 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress copper (II) chloride dihydrate across organisms