Experiment set1IT050 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Nickel (II) chloride hexahydrate 1 mM

200 most detrimental genes:

  gene name fitness t score description  
Echvi_4210 +1.8 15.6 RND family efflux transporter, MFP subunit conserved
Echvi_4209 +1.8 11.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_4211 +1.7 16.1 heavy metal efflux pump (cobalt-zinc-cadmium) compare
Echvi_4208 +1.7 14.1 Signal transduction histidine kinase compare
Echvi_1607 +1.6 1.9 Acylphosphatases compare
Echvi_4561 +1.3 2.7 hypothetical protein compare
Echvi_0128 +1.1 2.8 hypothetical protein compare
Echvi_3914 +0.9 8.0 Transcriptional regulators compare
Echvi_3703 +0.9 3.0 hypothetical protein compare
Echvi_3195 +0.8 2.8 hypothetical protein compare
Echvi_1196 +0.7 1.4 triosephosphate isomerase compare
Echvi_2253 +0.7 4.5 hypothetical protein compare
Echvi_2252 +0.7 3.4 Mg-chelatase subunit ChlD compare
Echvi_2254 +0.7 4.2 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Echvi_2586 +0.7 1.2 hypothetical protein compare
Echvi_0127 +0.7 1.8 hypothetical protein compare
Echvi_0090 +0.7 1.1 Iron-sulfur cluster assembly accessory protein compare
Echvi_1854 +0.7 1.1 tRNA compare
Echvi_2059 +0.6 1.4 3-isopropylmalate dehydratase, large subunit compare
Echvi_0718 +0.6 1.7 segregation and condensation protein B compare
Echvi_3910 +0.6 4.1 Transcriptional regulator/sugar kinase compare
Echvi_1517 +0.6 5.0 hypothetical protein compare
Echvi_2385 +0.6 1.0 hypothetical protein compare
Echvi_0622 +0.6 4.2 gliding motility-associated protein GldL compare
Echvi_0329 +0.6 1.6 hypothetical protein compare
Echvi_1611 +0.6 2.0 hypothetical protein compare
Echvi_0621 +0.6 5.4 gliding motility-associated protein GldM compare
Echvi_3911 +0.6 5.1 alpha-1,2-mannosidase, putative compare
Echvi_0300 +0.6 4.7 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_0980 +0.6 3.5 uroporphyrin-III C-methyltransferase compare
Echvi_4453 +0.6 1.4 hypothetical protein compare
Echvi_4334 +0.6 1.3 hypothetical protein compare
Echvi_2958 +0.5 3.8 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Echvi_1850 +0.5 3.6 Bacterial SH3 domain. compare
Echvi_1557 +0.5 3.3 MoxR-like ATPases compare
Echvi_0620 +0.5 4.4 gliding motility associated protien GldN compare
Echvi_0860 +0.5 3.4 hypothetical protein compare
Echvi_1224 +0.5 4.5 gliding motility-associated lipoprotein GldD compare
Echvi_2679 +0.5 1.0 hypothetical protein compare
Echvi_0861 +0.5 2.3 hypothetical protein compare
Echvi_3262 +0.5 1.2 hypothetical protein compare
Echvi_3872 +0.5 1.0 SnoaL-like polyketide cyclase. compare
Echvi_3704 +0.5 2.7 hypothetical protein compare
Echvi_0813 +0.5 1.1 hypothetical protein compare
Echvi_1761 +0.5 3.6 hypothetical protein compare
Echvi_1822 +0.5 0.8 ubiquinone/menaquinone biosynthesis methyltransferases compare
Echvi_1844 +0.5 1.7 3-ketohexose reductase (NADH) (from data) compare
Echvi_0169 +0.5 4.5 hypothetical protein compare
Echvi_3681 +0.5 2.1 Uncharacterized conserved protein compare
Echvi_2606 +0.5 0.9 hypothetical protein compare
Echvi_4092 +0.5 2.3 hypothetical protein compare
Echvi_4342 +0.5 4.3 transporter, SSS family compare
Echvi_2079 +0.5 1.8 Uncharacterized conserved protein compare
Echvi_2775 +0.5 3.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_0298 +0.5 4.3 gliding-associated putative ABC transporter substrate-binding component GldG compare
Echvi_0623 +0.5 4.5 gliding motility-associated lipoprotein GldK compare
Echvi_0299 +0.5 4.2 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_1865 +0.5 1.1 hypothetical protein compare
Echvi_2243 +0.5 2.1 hypothetical protein compare
Echvi_4050 +0.5 1.2 hypothetical protein compare
Echvi_2894 +0.5 1.4 YceI-like domain. compare
Echvi_0624 +0.5 3.9 Bacteroidetes-specific putative membrane protein compare
Echvi_0757 +0.5 1.2 hypothetical protein compare
Echvi_3472 +0.5 2.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_3223 +0.5 1.5 Mn-dependent transcriptional regulator compare
Echvi_2244 +0.5 1.7 hypothetical protein compare
Echvi_1080 +0.5 1.7 hypothetical protein compare
Echvi_1991 +0.4 1.5 Predicted methylated DNA-protein cysteine methyltransferase compare
Echvi_4666 +0.4 2.0 Cold shock proteins compare
Echvi_0655 +0.4 3.2 hypothetical protein compare
Echvi_0938 +0.4 2.1 Protein of unknown function (DUF1572). compare
Echvi_3243 +0.4 1.6 hypothetical protein compare
Echvi_2291 +0.4 2.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_2224 +0.4 1.8 hypothetical protein compare
Echvi_3813 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_1311 +0.4 3.7 gliding motility-associated lipoprotein GldJ compare
Echvi_2550 +0.4 1.7 DNA repair proteins compare
Echvi_1319 +0.4 3.9 gliding motility-associated lipoprotein GldB compare
Echvi_4546 +0.4 2.3 hypothetical protein compare
Echvi_2365 +0.4 1.2 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_4119 +0.4 2.2 hypothetical protein compare
Echvi_0105 +0.4 1.9 hypothetical protein compare
Echvi_3498 +0.4 0.9 hypothetical protein compare
Echvi_3110 +0.4 2.7 ABC-type hemin transport system, periplasmic component compare
Echvi_2204 +0.4 3.0 ABC-type antimicrobial peptide transport system, ATPase component compare
Echvi_1272 +0.4 1.8 Protein of unknown function (DUF2442). compare
Echvi_1108 +0.4 3.5 hypothetical protein compare
Echvi_1946 +0.4 0.9 hypothetical protein compare
Echvi_4638 +0.4 3.7 SusD family. compare
Echvi_1979 +0.4 1.6 Bacterial mobilisation protein (MobC). compare
Echvi_1119 +0.4 1.0 hypothetical protein compare
Echvi_3172 +0.4 2.0 hypothetical protein compare
Echvi_0199 +0.4 3.0 hypothetical protein compare
Echvi_3753 +0.4 1.9 hypothetical protein compare
Echvi_3807 +0.4 2.7 Thioredoxin reductase compare
Echvi_0012 +0.4 2.8 ABC-type antimicrobial peptide transport system, ATPase component compare
Echvi_0333 +0.4 3.6 Bacteroidetes-specific putative membrane protein compare
Echvi_2463 +0.4 1.4 Translation initiation factor 1 (eIF-1/SUI1) and related proteins compare
Echvi_1579 +0.4 2.5 hypothetical protein compare
Echvi_1237 +0.4 1.7 Thiol-disulfide isomerase and thioredoxins compare
Echvi_1033 +0.4 1.4 hypothetical protein compare
Echvi_4391 +0.4 3.6 Nucleoside-diphosphate-sugar epimerases compare
Echvi_3870 +0.4 0.6 hypothetical protein compare
Echvi_0711 +0.4 1.3 hypothetical protein compare
Echvi_0745 +0.4 3.2 Predicted aminopeptidases compare
Echvi_2579 +0.4 2.3 OmpW family. compare
Echvi_2860 +0.4 1.2 sugar-phosphate isomerases, RpiB/LacA/LacB family compare
Echvi_0222 +0.4 2.1 hypothetical protein compare
Echvi_3341 +0.4 1.6 Predicted membrane protein compare
Echvi_3456 +0.4 0.9 Uncharacterized protein conserved in bacteria compare
Echvi_1413 +0.4 1.4 Transposase. compare
Echvi_3473 +0.4 2.3 Tetratricopeptide repeat. compare
Echvi_1556 +0.4 1.9 pseudouridine synthase compare
Echvi_3702 +0.4 2.3 von Willebrand factor type A domain. compare
Echvi_3196 +0.4 2.1 Copper chaperone compare
Echvi_4184 +0.4 1.6 Predicted transcriptional regulators compare
Echvi_1525 +0.4 2.5 hypothetical protein compare
Echvi_3715 +0.4 1.2 Predicted Na+-dependent transporter compare
Echvi_2728 +0.4 1.7 Plant Basic Secretory Protein. compare
Echvi_0048 +0.4 1.0 Pseudouridylate synthases, 23S RNA-specific compare
Echvi_0674 +0.4 3.2 hypothetical protein compare
Echvi_1365 +0.4 0.8 hypothetical protein compare
Echvi_0003 +0.4 1.7 LAO/AO transport system ATPase compare
Echvi_0954 +0.4 3.0 SusD family. compare
Echvi_3505 +0.4 0.8 hypothetical protein compare
Echvi_3278 +0.4 1.5 hypothetical protein compare
Echvi_3485 +0.4 1.2 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_4639 +0.4 3.2 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_2384 +0.4 1.9 GSCFA family. compare
Echvi_3378 +0.4 1.3 Rhodanese-related sulfurtransferase compare
Echvi_4582 +0.4 1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_4325 +0.4 1.3 hypothetical protein compare
Echvi_0733 +0.4 3.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_0440 +0.3 1.1 DNA repair proteins compare
Echvi_2168 +0.3 2.3 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_2449 +0.3 1.7 hypothetical protein compare
Echvi_0638 +0.3 1.7 hypothetical protein compare
Echvi_2715 +0.3 1.5 hypothetical protein compare
Echvi_4074 +0.3 2.5 Tetratricopeptide repeat. compare
Echvi_0453 +0.3 1.9 RNA polymerase sigma factor, sigma-70 family compare
Echvi_4155 +0.3 2.0 DNA repair proteins compare
Echvi_2709 +0.3 1.1 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_2423 +0.3 2.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Echvi_1516 +0.3 1.2 hypothetical protein compare
Echvi_2402 +0.3 0.9 hypothetical protein compare
Echvi_2368 +0.3 1.9 hypothetical protein compare
Echvi_2583 +0.3 1.1 selT/selW/selH selenoprotein domain compare
Echvi_0857 +0.3 2.3 hypothetical protein compare
Echvi_2462 +0.3 1.3 hypothetical protein compare
Echvi_1594 +0.3 2.8 Outer membrane receptor proteins, mostly Fe transport compare
Echvi_2925 +0.3 1.8 hypothetical protein compare
Echvi_2280 +0.3 1.3 hypothetical protein compare
Echvi_2553 +0.3 1.1 hypothetical protein compare
Echvi_4465 +0.3 1.2 hypothetical protein compare
Echvi_1381 +0.3 2.1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0617 +0.3 2.9 hypothetical protein compare
Echvi_4285 +0.3 1.5 hypothetical protein compare
Echvi_0710 +0.3 1.9 hypothetical protein compare
Echvi_4594 +0.3 1.9 Xaa-Pro aminopeptidase compare
Echvi_1950 +0.3 1.1 hypothetical protein compare
Echvi_3952 +0.3 1.0 NAD-dependent aldehyde dehydrogenases compare
Echvi_2918 +0.3 2.1 Peroxiredoxin compare
Echvi_0135 +0.3 1.6 Uncharacterized protein conserved in bacteria compare
Echvi_1988 +0.3 1.4 Uncharacterized conserved protein compare
Echvi_1266 +0.3 1.3 putative solute:sodium symporter small subunit compare
Echvi_1821 +0.3 2.4 hypothetical protein compare
Echvi_1930 +0.3 0.8 DNA repair proteins compare
Echvi_2116 +0.3 1.9 hypothetical protein compare
Echvi_0641 +0.3 0.4 Transposase and inactivated derivatives compare
Echvi_2250 +0.3 2.1 hypothetical protein compare
Echvi_2829 +0.3 2.9 hypothetical protein compare
Echvi_0304 +0.3 1.9 purine nucleoside phosphorylase I, inosine and guanosine-specific compare
Echvi_4033 +0.3 1.3 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Echvi_0671 +0.3 1.7 hypothetical protein compare
Echvi_3517 +0.3 1.8 hypothetical protein compare
Echvi_2947 +0.3 1.1 hypothetical protein compare
Echvi_1223 +0.3 2.0 Uncharacterized protein conserved in bacteria compare
Echvi_4592 +0.3 1.7 Predicted membrane protein compare
Echvi_4269 +0.3 1.6 Uncharacterized protein conserved in bacteria compare
Echvi_1025 +0.3 1.9 hypothetical protein compare
Echvi_0900 +0.3 1.2 Protein of unknown function (DUF2905). compare
Echvi_0853 +0.3 2.3 Hemolysins and related proteins containing CBS domains compare
Echvi_0951 +0.3 2.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Echvi_0470 +0.3 1.9 beta-ketoacyl-acyl-carrier-protein synthase II compare
Echvi_3713 +0.3 1.6 Predicted metal-dependent membrane protease compare
Echvi_4476 +0.3 1.7 Nitrogen regulatory protein PII compare
Echvi_3773 +0.3 1.7 hypothetical protein compare
Echvi_2856 +0.3 1.6 hypothetical protein compare
Echvi_0345 +0.3 1.7 hypothetical protein compare
Echvi_0985 +0.3 1.4 Predicted membrane protein compare
Echvi_4589 +0.3 1.1 MoxR-like ATPases compare
Echvi_1364 +0.3 1.1 hypothetical protein compare
Echvi_3871 +0.3 0.9 hypothetical protein compare
Echvi_3822 +0.3 1.6 NAD-dependent aldehyde dehydrogenases compare
Echvi_4393 +0.3 2.6 Glycosyltransferase compare
Echvi_0691 +0.3 2.6 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases compare
Echvi_1628 +0.3 1.3 hypothetical protein compare
Echvi_2221 +0.3 1.3 Protein of unknown function (DUF1573). compare
Echvi_0164 +0.3 2.3 Mannose-1-phosphate guanylyltransferase compare
Echvi_0685 +0.3 1.5 Response regulator of the LytR/AlgR family compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Echinicola vietnamensis KMM 6221, DSM 17526

For stress Nickel (II) chloride hexahydrate across organisms