Experiment set1IT049 for Agrobacterium fabrum C58

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Atu0422 -6.2 -3.2 ABC transporter, membrane spanning protein compare
Atu0602 -5.6 -15.3 glutamine synthetase compare
Atu0999 -5.1 -10.3 magnesium transport protein compare
Atu0601 -4.8 -12.5 oxidoreductase compare
Atu0659 -4.6 -7.7 NTP pyrophosphohydrolase, MutT family compare
Atu0030 -4.5 -1.9 phosphocarrier protein HPr compare
Atu0421 -3.6 -2.1 ABC transporter, membrane spanning protein compare
Atu1030 -3.5 -2.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0912 -3.5 -1.4 Na+/H+ antiporter compare
Atu3730 -3.2 -2.2 hypothetical protein compare
Atu3763 -2.6 -2.5 hypothetical protein compare
Atu2832 -2.4 -6.1 tRNA modification GTPase compare
Atu1021 -2.3 -4.0 outer membrane protein compare
Atu1359 -2.2 -1.4 dnaK deletion suppressor protein compare
Atu0434 -2.1 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2831 -2.1 -7.0 glucose inhibited division protein A compare
Atu1810 -1.9 -1.5 hypothetical protein compare
Atu0658 -1.8 -10.5 phosphate permease compare
Atu3299 -1.8 -4.2 hypothetical protein compare
Atu0388 -1.8 -10.8 two component sensor kinase compare
Atu6189 -1.8 -1.3 protein secretion chaperone compare
Atu0184 -1.6 -3.2 glucokinase compare
Atu4217 -1.6 -1.8 TetR family transcriptional regulator compare
Atu0510 -1.5 -8.4 pH adaption potassium efflux system protein compare
Atu0368 -1.5 -6.1 tRNA pseudouridine synthase I compare
Atu0188 -1.5 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0971 -1.5 -5.3 two component sensor kinase compare
Atu4173 -1.4 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu0189 -1.4 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0641 -1.4 -3.0 hypothetical protein compare
Atu2207 -1.4 -2.7 two component sensor kinase compare
Atu2554 -1.3 -2.5 lysyl-tRNA synthetase compare
Atu8131 -1.3 -7.6 pH adaption potassium efflux system protein compare
Atu3757 -1.3 -2.6 hypothetical protein compare
Atu2045 -1.3 -4.6 HFLK protein compare
Atu0508 -1.3 -2.3 PH Adaption potassium efflux system compare
Atu2684 -1.3 -2.0 hypothetical protein compare
Atu0946 -1.2 -6.2 dehydrogenase compare
Atu2728 -1.2 -3.7 beta (1-->2) glucan export ATP-binding protein compare
Atu2682 -1.2 -2.9 hypothetical protein compare
Atu4635 -1.2 -4.4 hypothetical protein compare
Atu3336 -1.2 -1.6 hypothetical protein compare
Atu3910 -1.2 -2.8 LamB/YcsF family protein compare
Atu2044 -1.2 -7.2 HFLC protein compare
Atu2692 -1.2 -3.1 intracellular septation protein compare
Atu0876 -1.1 -1.6 superoxide dismutase compare
Atu0331 -1.1 -2.2 sigma-54 modulation protein compare
Atu1774 -1.1 -5.6 ABC transporter, substrate binding protein (peptide) compare
Atu0190 -1.1 -5.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0925 -1.1 -4.1 hypothetical protein compare
Atu0769 -1.1 -1.5 protoheme IX farnesyltransferase compare
Atu0977 -1.1 -2.5 serine protease DO-like protease compare
Atu1535 -1.0 -2.5 cytochrome c oxidase, FixQ chain compare
Atu5475 -1.0 -1.9 hypothetical protein compare
Atu5164 -1.0 -0.7 type IV secretion protein AvhB3 compare
Atu0533 -1.0 -2.0 putative inhibitor of septum formation compare
Atu0762 -1.0 -2.4 hypothetical protein compare
Atu1028 -1.0 -2.0 hypothetical protein compare
Atu3467 -1.0 -2.6 hypothetical protein compare
Atu3732 -1.0 -6.1 hemolysin compare
Atu2555 -1.0 -2.6 L-lysine 2,3-aminomutase compare
Atu2245 -1.0 -5.6 Na+/Pi-cotransporter compare
Atu6045 -0.9 -0.9 replication protein C compare
Atu1110 -0.9 -2.1 cytosol aminopeptidase compare
Atu4317 -0.9 -2.1 TetR family transcriptional regulator compare
Atu8096 -0.9 -1.4 hypothetical protein compare
Atu3773 -0.9 -1.6 hypothetical protein compare
Atu2125 -0.9 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2052 -0.9 -4.6 hypothetical protein compare
Atu2209 -0.9 -2.6 pyrroline-5-carboxylate reductase compare
Atu0507 -0.9 -2.3 potassium efflux system protein compare
Atu0784 -0.9 -2.3 hypothetical protein compare
Atu3469 -0.9 -1.7 phosphoglyceromutase compare
Atu5045 -0.9 -1.1 hypothetical protein compare
Atu4166 -0.9 -1.5 UDP-glucose 4-epimerase compare
Atu0141 -0.8 -0.5 cytochrome O ubiquinol oxidase subunit I compare
Atu1677 -0.8 -3.0 queuine tRNA-ribosyltransferase compare
Atu1204 -0.8 -3.5 potassium uptake protein compare
Atu2662 -0.8 -1.1 acetyltransferase compare
Atu0677 -0.8 -1.0 hypothetical protein compare
Atu1285 -0.8 -3.6 metal dependent hydrolase compare
Atu0923 -0.8 -4.6 hypothetical protein compare
Atu8191 -0.8 -1.4 hypothetical protein compare
Atu2746 -0.8 -2.1 hypothetical protein compare
Atu4610 -0.8 -5.1 sugar nucleotide epimerase/dehydratase compare
Atu0479 -0.8 -4.0 ABC transporter, substrate binding protein (amino acid) compare
Atu3295 -0.8 -3.1 hypothetical protein compare
Atu1163 -0.8 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8010 -0.8 -2.3 hypothetical protein compare
Atu3249 -0.8 -3.1 septum formation inhibitor compare
Atu1847 -0.8 -1.2 hypothetical protein compare
Atu2590 -0.8 -3.9 hypothetical protein compare
Atu1729 -0.8 -3.3 putative molybdenum cofactor biosynthesis protein compare
Atu0687 -0.8 -1.8 hypothetical protein compare
Atu2083 -0.8 -3.0 DNA repair protein RecN compare
Atu0086 -0.8 -0.7 ribosome-binding factor A compare
Atu8056 -0.8 -0.7 hypothetical protein compare
Atu2378 -0.8 -1.9 hypothetical protein compare
Atu0399 -0.8 -2.7 dihydroorotase compare
Atu2800 -0.8 -1.2 precorrin-3B C17-methyltransferase compare
Atu3517 -0.8 -3.3 acetyltransferase compare
Atu0947 -0.7 -3.2 transcriptional regulator, AsnC family compare
Atu0237 -0.7 -2.5 hypothetical protein compare
Atu0382 -0.7 -1.5 hypothetical protein compare
Atu2439 -0.7 -0.9 hypothetical protein compare
Atu1581 -0.7 -0.9 hypothetical protein compare
Atu2464 -0.7 -2.0 formyltetrahydrofolate deformylase compare
Atu2620 -0.7 -0.9 hypothetical protein compare
Atu1838 -0.7 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu1513 -0.7 -3.0 ABC excinuclease subunit A compare
Atu1891 -0.7 -2.1 cobalamin biosynthesis protein compare
Atu2585 -0.7 -3.9 hypothetical protein compare
Atu3115 -0.7 -1.7 TetR family transcriptional regulator compare
Atu2672 -0.7 -2.5 hypothetical protein compare
Atu4896 -0.7 -1.3 acetyltransferase compare
Atu0690 -0.7 -1.6 hypothetical protein compare
Atu0185 -0.7 -2.0 methylglyoxal synthase compare
Atu1327 -0.7 -1.4 NADH-ubiquinone oxidoreductase compare
Atu5109 -0.7 -1.7 conjugal transfer protein compare
Atu3698 -0.7 -2.0 thioredoxin compare
Atu1447 -0.7 -1.7 two component sensor kinase compare
Atu4133 -0.7 -1.3 hypothetical protein compare
Atu5125 -0.7 -3.2 GntR family transcriptional regulator compare
Atu1467 -0.7 -1.6 hypothetical protein compare
Atu1223 -0.7 -0.9 hypothetical protein compare
Atu3780 -0.7 -2.5 hypothetical protein compare
Atu3887 -0.7 -1.6 small heat shock protein compare
Atu4159 -0.7 -2.0 AsnC family transcriptional regulator compare
Atu3465 -0.7 -2.0 metallo-beta-lactamase superfamily protein compare
Atu0142 -0.7 -1.0 cytochrome o ubiquinol oxidase subunit II compare
Atu1325 -0.7 -1.2 acetyltransferase compare
Atu5047 -0.6 -2.0 hypothetical protein compare
Atu2306 -0.6 -3.1 methionine aminopeptidase compare
Atu1076 -0.6 -1.6 colicin V production protein compare
Atu2328 -0.6 -2.5 hypothetical protein compare
Atu8189 -0.6 -2.0 hypothetical protein compare
Atu8117 -0.6 -1.6 hypothetical protein compare
Atu3472 -0.6 -2.4 2-oxoisovalerate dehydrogenase subunit beta compare
Atu3739 -0.6 -1.0 phosphoglycerate kinase compare
Atu0107 -0.6 -1.0 hypothetical protein compare
Atu4148 -0.6 -2.5 UDP-glucuronic acid epimerase compare
Atu2592 -0.6 -3.0 hypothetical protein compare
Atu0843 -0.6 -5.0 P type cation (metal) transporter, ATPase component compare
Atu5145 -0.6 -1.5 acetyltransferase compare
Atu0978 -0.6 -3.4 two component response regulator compare
Atu3496 -0.6 -1.7 hypothetical protein compare
Atu2163 -0.6 -0.7 hypothetical protein compare
Atu4484 -0.6 -2.3 hypothetical protein compare
Atu1133 -0.6 -3.6 ribonuclease compare
Atu4338 -0.6 -2.0 hypothetical protein compare
Atu0369 -0.6 -2.0 hypothetical protein compare
Atu2146 -0.6 -2.2 hypothetical protein compare
Atu1853 -0.6 -1.7 hypothetical protein compare
Atu2808 -0.6 -2.7 cobyric acid synthase compare
Atu1449 -0.6 -3.3 potassium uptake protein compare
Atu0050 -0.6 -2.6 two component response regulator compare
Atu4405 -0.6 -1.6 periplasmic nitrate reductase NapE compare
Atu4149 -0.6 -4.0 UDP-glucose 6-dehydrogenase compare
Atu2441 -0.6 -1.3 RNA methylase compare
Atu3328 -0.6 -1.8 aldehyde dehydrogenase compare
Atu2478 -0.6 -1.5 hypothetical protein compare
Atu0269 -0.6 -2.4 exodeoxyribonuclease VII large subunit compare
Atu3657 -0.6 -2.1 hypothetical protein compare
Atu4040 -0.6 -1.2 hypothetical protein compare
Atu8177 -0.6 -1.2 hypothetical protein compare
Atu2200 -0.6 -1.4 cold shock protein compare
Atu5473 -0.6 -2.5 D-alanine aminotransferase compare
Atu4615 -0.6 -3.4 glucose-1-phosphate thymidylyltransferase compare
Atu0340 -0.6 -1.1 SAM dependent methyltransferase compare
Atu8041 -0.6 -1.3 hypothetical protein compare
Atu2799 -0.6 -2.0 precorrin-6x reductase compare
Atu2489 -0.6 -3.0 hypothetical protein compare
Atu0786 -0.5 -1.7 peptidase, family M16 compare
Atu1628 -0.5 -1.1 hypothetical protein compare
Atu1970 -0.5 -1.5 hypothetical protein compare
Atu1558 -0.5 -1.6 permease compare
Atu0513 -0.5 -3.0 hypothetical protein compare
Atu3791 -0.5 -3.3 L-asparaginase compare
Atu1131 -0.5 -2.4 outer membrane protein compare
Atu1260 -0.5 -0.8 hypothetical protein compare
Atu0920 -0.5 -2.6 hypothetical protein compare
Atu1851 -0.5 -1.4 BolA/YrbA family protein compare
Atu0751 -0.5 -2.1 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu2776 -0.5 -3.7 hypothetical protein compare
Atu0806 -0.5 -3.4 hypothetical protein compare
Atu1303 -0.5 -3.4 exoribonuclease compare
Atu1546 -0.5 -1.9 transcriptional regulator, MerR family compare
Atu2766 -0.5 -4.4 NAD-glutamate dehydrogenase compare
Atu2583 -0.5 -3.7 glycosyltransferase compare
Atu4161 -0.5 -0.9 hypothetical protein compare
Atu1683 -0.5 -1.4 hypothetical protein compare
Atu2057 -0.5 -1.4 DNA helicase II compare
Atu2824 -0.5 -2.0 hypothetical protein compare
Atu3847 -0.5 -2.7 hypothetical protein compare
Atu0359 -0.5 -2.8 hemolysin compare
Atu3613 -0.5 -2.5 hypothetical protein compare
Atu6131 -0.5 -1.9 TraR Antiactivator compare
Atu2140 -0.5 -1.7 hypothetical protein compare
Atu1993 -0.5 -2.8 tRNA/rRNA metyltransferase compare
Atu2640 -0.5 -2.1 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment