Experiment set1IT048 for Serratia liquefaciens MT49

Compare to:

Cadmium acetate dihydrate 40 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI46_18120 -5.7 -4.0 tRNA-Arg compare
IAI46_17990 -5.5 -1.6 hypothetical protein compare
IAI46_21210 -5.4 -6.5 RNA polymerase-binding protein DksA compare
IAI46_09185 -5.3 -2.7 hypothetical protein compare
IAI46_12310 -5.2 -2.6 alcohol dehydrogenase AdhP compare
IAI46_08635 -5.1 -5.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_23295 -5.1 -7.3 Zn(2+)-responsive transcriptional regulator compare
IAI46_05375 -4.9 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_00855 -4.7 -14.6 zinc/cadmium/mercury/lead-transporting ATPase compare
IAI46_24660 -4.6 -8.7 envelope stress response regulator transcription factor CpxR compare
IAI46_24995 -4.6 -10.4 thiol:disulfide interchange protein DsbA compare
IAI46_05520 -4.5 -1.3 transposase compare
IAI46_20900 -4.4 -7.6 phosphoglycerate dehydrogenase compare
IAI46_06505 -4.2 -2.9 6-phosphogluconolactonase compare
IAI46_23205 -4.2 -1.2 5S ribosomal RNA compare
IAI46_01200 -4.1 -2.1 tRNA-Thr compare
IAI46_05385 -4.0 -1.2 peptidylprolyl isomerase B compare
IAI46_08805 -3.9 -5.8 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_08025 -3.8 -5.2 acylneuraminate cytidylyltransferase family protein compare
IAI46_06005 -3.8 -7.5 CNNM family magnesium/cobalt transport protein CorC compare
IAI46_23785 -3.8 -12.1 two-component system sensor histidine kinase EnvZ compare
IAI46_23240 -3.7 -2.6 shikimate dehydrogenase compare
IAI46_20760 -3.7 -2.1 FAD assembly factor SdhE compare
IAI46_03015 -3.7 -5.0 two-component system response regulator ArcA compare
IAI46_03715 -3.7 -7.3 sulfate adenylyltransferase subunit CysD compare
IAI46_06275 -3.7 -2.5 2-oxoglutarate dehydrogenase E1 component compare
IAI46_13600 -3.6 -3.2 hypothetical protein compare
IAI46_19750 -3.6 -3.1 MBL fold metallo-hydrolase compare
IAI46_15635 -3.6 -3.2 ABC transporter ATP-binding protein compare
IAI46_07070 -3.5 -3.0 TetR/AcrR family transcriptional regulator compare
IAI46_14350 -3.5 -2.1 peptide-methionine (R)-S-oxide reductase MsrB compare
IAI46_18025 -3.4 -6.5 chorismate synthase compare
IAI46_18770 -3.4 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_10285 -3.3 -2.3 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_11260 -3.3 -2.2 Grx4 family monothiol glutaredoxin compare
IAI46_11155 -3.3 -4.2 Fe-S cluster assembly ATPase SufC compare
IAI46_19740 -3.2 -4.2 DEAD/DEAH box helicase family protein compare
IAI46_24960 -3.2 -5.3 nitrogen regulation protein NR(I) compare
IAI46_12425 -3.2 -4.8 LysR family transcriptional regulator compare
IAI46_01070 -3.2 -1.8 SCP2 domain-containing protein compare
IAI46_10500 -3.2 -2.4 hypothetical protein compare
IAI46_02320 -3.1 -5.0 ornithine carbamoyltransferase compare
IAI46_22335 -3.1 -9.6 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_23790 -3.1 -4.4 two-component system response regulator OmpR compare
IAI46_14515 -3.1 -3.4 septum site-determining protein MinC compare
IAI46_24515 -3.0 -6.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI46_08195 -3.0 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI46_20730 -3.0 -2.1 site-specific tyrosine recombinase XerD compare
IAI46_02265 -3.0 -1.2 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI46_22770 -3.0 -3.8 50S ribosomal protein L11 methyltransferase compare
IAI46_13915 -3.0 -2.8 orotidine-5'-phosphate decarboxylase compare
IAI46_08190 -3.0 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI46_05370 -2.9 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_13785 -2.9 -2.7 phosphoadenosine phosphosulfate reductase family protein compare
IAI46_04845 -2.9 -2.3 preprotein translocase subunit YajC compare
IAI46_24760 -2.9 -3.5 glycosyltransferase compare
IAI46_12055 -2.9 -2.4 hypothetical protein compare
IAI46_04430 -2.9 -5.7 glutamate 5-kinase compare
IAI46_14170 -2.9 -2.1 DUF1937 family protein compare
IAI46_17755 -2.9 -3.6 phosphate acetyltransferase compare
IAI46_09400 -2.9 -2.7 hypothetical protein compare
IAI46_24985 -2.9 -6.7 DNA polymerase I compare
IAI46_11340 -2.9 -2.8 transcriptional regulator SlyA compare
IAI46_19745 -2.9 -4.0 hypothetical protein compare
IAI46_24750 -2.9 -2.0 glycosyltransferase compare
IAI46_13460 -2.8 -2.7 L-Ala-D/L-Glu epimerase compare
IAI46_06300 -2.8 -5.1 cytochrome d ubiquinol oxidase subunit II compare
IAI46_19735 -2.8 -4.3 histidine kinase compare
IAI46_24770 -2.8 -3.3 polysaccharide deacetylase family protein compare
IAI46_16350 -2.7 -3.0 1,2-phenylacetyl-CoA epoxidase subunit A compare
IAI46_05015 -2.7 -5.7 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_08215 -2.7 -3.9 ATP phosphoribosyltransferase compare
IAI46_10190 -2.7 -2.8 beta-galactosidase subunit beta compare
IAI46_02940 -2.7 -6.9 phosphoserine phosphatase compare
IAI46_24705 -2.6 -2.8 rhodanese-like domain-containing protein compare
IAI46_01650 -2.6 -1.5 adenylosuccinate synthase compare
IAI46_01970 -2.6 -3.5 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_13055 -2.6 -2.0 alpha/beta hydrolase compare
IAI46_18915 -2.6 -8.3 polyphosphate kinase 1 compare
IAI46_08535 -2.6 -4.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI46_13175 -2.6 -2.8 flagellar brake protein compare
IAI46_17810 -2.5 -6.1 amidophosphoribosyltransferase compare
IAI46_23685 -2.5 -1.7 ribulose-phosphate 3-epimerase compare
IAI46_08200 -2.5 -5.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI46_18885 -2.5 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_17145 -2.5 -2.0 DNA polymerase II compare
IAI46_08640 -2.5 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_08185 -2.5 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_09735 -2.4 -1.9 DNA damage-inducible protein I compare
IAI46_11840 -2.4 -1.3 (2Fe-2S)-binding protein compare
IAI46_03690 -2.4 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI46_22240 -2.4 -5.5 DedA family protein compare
IAI46_03720 -2.4 -7.6 sulfate adenylyltransferase subunit CysN compare
IAI46_17245 -2.4 -2.1 NUDIX domain-containing protein compare
IAI46_17750 -2.4 -4.6 acetate kinase compare
IAI46_17595 -2.4 -2.8 DUF1097 domain-containing protein compare
IAI46_10215 -2.3 -1.6 helix-turn-helix transcriptional regulator compare
IAI46_24955 -2.3 -5.4 nitrogen regulation protein NR(II) compare
IAI46_06295 -2.3 -5.8 cytochrome ubiquinol oxidase subunit I compare
IAI46_11440 -2.3 -1.9 helix-turn-helix transcriptional regulator compare
IAI46_11135 -2.3 -3.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
IAI46_24755 -2.3 -8.1 O-antigen ligase family protein compare
IAI46_01625 -2.3 -4.4 RNA chaperone Hfq compare
IAI46_09740 -2.3 -4.3 dihydroorotase compare
IAI46_13095 -2.3 -1.9 ABC transporter ATP-binding protein compare
IAI46_13585 -2.3 -2.4 hypothetical protein compare
IAI46_05905 -2.3 -2.6 lipoyl(octanoyl) transferase LipB compare
IAI46_24845 -2.3 -4.7 orotate phosphoribosyltransferase compare
IAI46_00710 -2.3 -1.8 lipoprotein compare
IAI46_01365 -2.3 -7.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_23690 -2.3 -1.6 adenine-specific DNA-methyltransferase compare
IAI46_08130 -2.3 -1.5 ABC transporter ATP-binding protein compare
IAI46_11915 -2.3 -3.4 LysR family transcriptional regulator compare
IAI46_21325 -2.2 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_23215 -2.2 -0.9 5S ribosomal RNA compare
IAI46_09395 -2.2 -2.0 hypothetical protein compare
IAI46_10660 -2.2 -1.1 TetR/AcrR family transcriptional regulator compare
IAI46_13070 -2.2 -1.7 cupin domain-containing protein compare
IAI46_01360 -2.2 -7.2 phosphoribosylamine--glycine ligase compare
IAI46_19345 -2.1 -2.8 iron-sulfur cluster assembly protein IscA compare
IAI46_10800 -2.1 -4.0 carboxy terminal-processing peptidase compare
IAI46_24510 -2.1 -5.3 acetylglutamate kinase compare
IAI46_11185 -2.1 -1.6 pyruvate kinase PykF compare
IAI46_20170 -2.1 -5.2 winged helix-turn-helix transcriptional regulator compare
IAI46_13910 -2.1 -1.3 stress response translation initiation inhibitor YciH compare
IAI46_12725 -2.1 -1.4 TetR/AcrR family transcriptional regulator compare
IAI46_12800 -2.0 -1.6 protocatechuate 3,4-dioxygenase subunit beta compare
IAI46_05320 -2.0 -1.9 NfeD family protein compare
IAI46_11160 -2.0 -3.2 Fe-S cluster assembly protein SufD compare
IAI46_05010 -2.0 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
IAI46_14650 -2.0 -1.2 zinc ribbon domain-containing protein compare
IAI46_03685 -2.0 -5.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI46_23700 -2.0 -4.3 3-dehydroquinate synthase compare
IAI46_13880 -2.0 -1.7 fructose-6-phosphate aldolase compare
IAI46_03985 -2.0 -6.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_12540 -2.0 -1.3 formate hydrogenlyase regulator HycA compare
IAI46_16025 -2.0 -2.9 Tar ligand binding domain-containing protein compare
IAI46_15130 -2.0 -1.8 hypothetical protein compare
IAI46_12615 -2.0 -1.6 hypothetical protein compare
IAI46_09380 -2.0 -4.5 hypothetical protein compare
IAI46_20455 -2.0 -2.2 RNA pyrophosphohydrolase compare
IAI46_12280 -1.9 -2.3 ABC transporter permease subunit compare
IAI46_09100 -1.9 -1.8 enoyl-CoA hydratase/isomerase family protein compare
IAI46_16225 -1.9 -1.8 MgtC family protein compare
IAI46_07060 -1.9 -1.0 DUF1471 domain-containing protein compare
IAI46_09385 -1.9 -5.2 hypothetical protein compare
IAI46_22745 -1.9 -1.3 type II 3-dehydroquinate dehydratase compare
IAI46_18890 -1.9 -3.7 phosphoribosylglycinamide formyltransferase compare
IAI46_17840 -1.9 -3.8 tRNA pseudouridine(38-40) synthase TruA compare
IAI46_23090 -1.9 -7.6 glucose-6-phosphate isomerase compare
IAI46_14045 -1.9 -3.8 tryptophan synthase subunit alpha compare
IAI46_09390 -1.9 -1.6 hypothetical protein compare
IAI46_18500 -1.9 -3.7 sulfate/thiosulfate ABC transporter permease CysW compare
IAI46_25250 -1.9 -3.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_22590 -1.9 -1.1 ribosome-associated protein compare
IAI46_03035 -1.9 -5.3 homoserine kinase compare
IAI46_16935 -1.9 -2.6 alanyl-tRNA editing protein compare
IAI46_18525 -1.9 -1.7 DUF2919 domain-containing protein compare
IAI46_11560 -1.9 -2.3 class II fructose-bisphosphate aldolase compare
IAI46_19600 -1.9 -5.1 ATP-dependent RNA helicase SrmB compare
IAI46_18750 -1.9 -1.6 YpfN family protein compare
IAI46_16625 -1.9 -2.0 DgsA anti-repressor MtfA compare
IAI46_03255 -1.8 -1.9 peptidylprolyl isomerase SurA compare
IAI46_15960 -1.8 -2.4 flagellar basal body rod protein FlgB compare
IAI46_12610 -1.8 -2.0 alpha/beta hydrolase compare
IAI46_03190 -1.8 -4.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_08615 -1.8 -2.9 formate transporter FocA compare
IAI46_03195 -1.8 -6.8 carbamoyl-phosphate synthase large subunit compare
IAI46_05760 -1.8 -1.6 RidA family protein compare
IAI46_14805 -1.8 -3.8 TerC family protein compare
IAI46_20120 -1.8 -2.5 YaeP family protein compare
IAI46_24695 -1.8 -4.6 protein-export chaperone SecB compare
IAI46_02420 -1.8 -2.0 DNA cytosine methyltransferase compare
IAI46_08530 -1.8 -2.7 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_13625 -1.8 -3.2 HK97 gp10 family phage protein compare
IAI46_12245 -1.8 -2.1 TIM barrel protein compare
IAI46_08180 -1.8 -2.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI46_13450 -1.8 -2.5 hypothetical protein compare
IAI46_08015 -1.8 -2.0 protein tyrosine phosphatase compare
IAI46_03960 -1.8 -5.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
IAI46_18495 -1.8 -3.1 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI46_13775 -1.8 -2.8 chromosome partitioning protein ParB compare
IAI46_02325 -1.8 -3.1 ribonuclease E inhibitor RraB compare
IAI46_19560 -1.8 -3.7 elongation factor 4 compare
IAI46_16765 -1.8 -1.7 type II toxin-antitoxin system PemK/MazF family toxin compare
IAI46_15990 -1.7 -1.4 flagellar protein FlhE compare
IAI46_24655 -1.7 -4.3 cell-envelope stress modulator CpxP compare
IAI46_08545 -1.7 -2.8 LysR family transcriptional regulator compare
IAI46_02890 -1.7 -1.9 stress-response protein compare
IAI46_08205 -1.7 -4.6 histidinol-phosphate transaminase compare
IAI46_22615 -1.7 -2.7 AaeX family protein compare
IAI46_18465 -1.7 -1.1 PTS glucose transporter subunit IIA compare
IAI46_11130 -1.7 -4.9 FAD-binding oxidoreductase compare
IAI46_08135 -1.7 -2.1 DUF4422 domain-containing protein compare
IAI46_15645 -1.7 -2.2 ABC transporter permease compare
IAI46_19005 -1.7 -2.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
IAI46_04935 -1.7 -1.0 exodeoxyribonuclease VII small subunit compare
IAI46_09935 -1.7 -1.7 helix-turn-helix domain-containing protein compare
IAI46_24665 -1.7 -3.0 envelope stress sensor histidine kinase CpxA compare
IAI46_20015 -1.7 -2.2 thioredoxin TrxC compare


Specific Phenotypes

For 6 genes in this experiment

For stress Cadmium acetate dihydrate in Serratia liquefaciens MT49

For stress Cadmium acetate dihydrate across organisms