Experiment set1IT048 for Serratia liquefaciens MT49

Compare to:

Cadmium acetate dihydrate 40 uM, aerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI46_19820 +1.5 4.2 N-acetyltransferase compare
IAI46_04860 +1.5 4.5 response regulator transcription factor compare
IAI46_08835 +1.4 3.8 intermembrane transport protein PqiB compare
IAI46_09800 +1.4 4.5 beta-ketoacyl-ACP synthase II compare
IAI46_07125 +1.4 1.5 SDR family oxidoreductase compare
IAI46_06315 +1.3 2.1 tol-pal system-associated acyl-CoA thioesterase compare
IAI46_04455 +1.3 1.5 DUF1471 domain-containing protein compare
IAI46_16945 +1.3 1.1 DNA oxidative demethylase AlkB compare
IAI46_11195 +1.2 1.4 tRNA-Val compare
IAI46_11795 +1.2 1.8 xanthine dehydrogenase accessory protein XdhC compare
IAI46_12620 +1.2 2.3 MerR family transcriptional regulator compare
IAI46_01695 +1.2 2.2 DUF1471 domain-containing protein compare
IAI46_04285 +1.2 1.7 hydroxyisourate hydrolase compare
IAI46_09245 +1.1 1.8 PTS sugar transporter subunit IIB compare
IAI46_07625 +1.1 2.2 hypothetical protein compare
IAI46_15115 +1.1 2.2 hypothetical protein compare
IAI46_08935 +1.1 1.4 acylphosphatase compare
IAI46_12305 +1.1 1.8 hypothetical protein compare
IAI46_00820 +1.1 4.0 DcrB family lipoprotein compare
IAI46_16010 +1.1 2.1 chemotaxis response regulator CheY compare
IAI46_02415 +1.1 0.9 hypothetical protein compare
IAI46_09135 +1.0 3.3 Ldh family oxidoreductase compare
IAI46_09370 +1.0 2.7 hypothetical protein compare
IAI46_16325 +1.0 2.0 hypothetical protein compare
IAI46_14930 +1.0 2.0 peptidoglycan-binding protein LysM compare
IAI46_00630 +1.0 3.6 lipid III flippase WzxE compare
IAI46_15890 +1.0 2.2 flagellar type III secretion system pore protein FliP compare
IAI46_15195 +1.0 1.9 helix-turn-helix domain-containing protein compare
IAI46_12110 +1.0 1.9 beta-lactamase family protein compare
IAI46_14320 +1.0 3.0 NAD(P)H nitroreductase compare
IAI46_08390 +1.0 2.3 YbjO family protein compare
IAI46_11470 +1.0 2.7 electron transport complex subunit RsxD compare
IAI46_12410 +1.0 1.5 SDR family NAD(P)-dependent oxidoreductase compare
IAI46_13870 +1.0 3.8 exoribonuclease II compare
IAI46_13885 +1.0 1.9 glycyl-radical enzyme activating protein compare
IAI46_02410 +1.0 2.0 hypothetical protein compare
IAI46_16305 +1.0 3.1 GlsB/YeaQ/YmgE family stress response membrane protein compare
IAI46_12095 +1.0 2.5 LLM class flavin-dependent oxidoreductase compare
IAI46_14870 +1.0 2.0 DUF4060 family protein compare
IAI46_08795 +0.9 2.3 sulfonate ABC transporter substrate-binding protein compare
IAI46_21230 +0.9 3.0 two-component system sensor histidine kinase QseC compare
IAI46_16120 +0.9 3.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
IAI46_11300 +0.9 1.4 LysR family transcriptional regulator compare
IAI46_11485 +0.9 2.1 electron transport complex subunit RsxB compare
IAI46_07290 +0.9 2.0 NUDIX hydrolase compare
IAI46_07965 +0.9 3.6 iron-sulfur cluster carrier protein ApbC compare
IAI46_05590 +0.9 1.2 DotU family type IV/VI secretion system protein compare
IAI46_10445 +0.9 0.9 NUDIX hydrolase compare
IAI46_15170 +0.9 2.5 hypothetical protein compare
IAI46_04365 +0.9 5.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
IAI46_13240 +0.9 1.5 hypothetical protein compare
IAI46_15020 +0.9 1.8 hypothetical protein compare
IAI46_02385 +0.9 2.3 hypothetical protein compare
IAI46_11990 +0.9 1.5 MoaF N-terminal domain-containing protein compare
IAI46_09340 +0.9 2.6 hypothetical protein compare
IAI46_11295 +0.9 1.5 NAD(P)-dependent oxidoreductase compare
IAI46_04205 +0.9 4.9 MFS transporter compare
IAI46_10145 +0.9 1.6 hypothetical protein compare
IAI46_17365 +0.9 0.8 YejL family protein compare
IAI46_18005 +0.9 1.1 YfcL family protein compare
IAI46_22775 +0.9 3.3 tRNA dihydrouridine synthase DusB compare
IAI46_10325 +0.9 3.5 threo-3-hydroxy-L-aspartate ammonia-lyase compare
IAI46_12380 +0.9 1.7 carboxymuconolactone decarboxylase family protein compare
IAI46_15325 +0.9 2.2 succinylglutamate-semialdehyde dehydrogenase compare
IAI46_14740 +0.9 2.4 phosphotransferase compare
IAI46_10760 +0.9 1.3 spore coat protein U domain-containing protein compare
IAI46_17700 +0.9 2.9 NADH-quinone oxidoreductase subunit C/D compare
IAI46_20215 +0.9 2.2 molecular chaperone Skp compare
IAI46_08100 +0.8 2.6 HlyD family type I secretion periplasmic adaptor subunit compare
IAI46_20285 +0.8 2.7 flavodoxin compare
IAI46_19615 +0.8 1.6 autonomous glycyl radical cofactor GrcA compare
IAI46_11250 +0.8 2.4 superoxide dismutase [Fe] compare
IAI46_14335 +0.8 3.1 bifunctional nicotinamidase/pyrazinamidase compare
IAI46_24315 +0.8 0.7 4-oxalocrotonate tautomerase family protein compare
IAI46_17820 +0.8 2.1 cell division protein DedD compare
IAI46_22365 +0.8 4.0 stringent starvation protein A compare
IAI46_04805 +0.8 1.0 hypothetical protein compare
IAI46_23835 +0.8 1.5 Fe-S biogenesis protein NfuA compare
IAI46_11810 +0.8 2.0 isochorismatase family protein compare
IAI46_09080 +0.8 1.5 cell envelope integrity protein TolA compare
IAI46_12300 +0.8 2.7 ABC transporter ATP-binding protein compare
IAI46_02360 +0.8 3.5 leucyl aminopeptidase compare
IAI46_00615 +0.8 2.0 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI46_14750 +0.8 0.6 hypothetical protein compare
IAI46_05210 +0.8 1.7 pleiotropic regulatory protein RsmS compare
IAI46_05655 +0.8 2.2 AlpA family transcriptional regulator compare
IAI46_00425 +0.8 2.4 organic hydroperoxide resistance protein compare
IAI46_11175 +0.8 3.6 L,D-transpeptidase family protein compare
IAI46_10655 +0.8 1.2 hydrolase compare
IAI46_12460 +0.8 0.9 fumarylacetoacetate hydrolase family protein compare
IAI46_17155 +0.8 3.2 APC family permease compare
IAI46_04395 +0.8 3.3 (Na+)-NQR maturation NqrM compare
IAI46_22855 +0.8 1.3 DUF1471 domain-containing protein compare
IAI46_04385 +0.8 4.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
IAI46_03490 +0.8 1.9 8-oxo-dGTP diphosphatase MutT compare
IAI46_03305 +0.8 1.9 thiamine ABC transporter ATP-binding protein ThiQ compare
IAI46_09655 +0.8 1.6 VOC family protein compare
IAI46_20085 +0.8 3.1 MetQ/NlpA family lipoprotein compare
IAI46_19325 +0.8 1.4 Fe-S cluster assembly protein IscX compare
IAI46_16375 +0.8 1.7 2,3-dehydroadipyl-CoA hydratase compare
IAI46_01090 +0.8 4.5 Sec-independent protein translocase subunit TatC compare
IAI46_00620 +0.8 2.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI46_14860 +0.8 2.0 hypothetical protein compare
IAI46_04655 +0.8 1.9 shikimate kinase AroL compare
IAI46_18340 +0.8 0.8 Fe(3+)-siderophore ABC transporter permease compare
IAI46_15870 +0.8 1.9 flagellar basal body-associated protein FliL compare
IAI46_10025 +0.8 1.4 DUF4377 domain-containing protein compare
IAI46_09455 +0.8 1.4 hypothetical protein compare
IAI46_16040 +0.8 1.8 chemotaxis protein CheA compare
IAI46_07460 +0.8 2.4 DHA2 family efflux MFS transporter permease subunit compare
IAI46_17960 +0.8 2.8 FAD:protein FMN transferase ApbE compare
IAI46_15760 +0.7 1.1 L-cystine ABC transporter ATP-binding protein YecC compare
IAI46_11525 +0.7 2.2 arabinose operon transcriptional regulator AraC compare
IAI46_13115 +0.7 1.6 Zn-dependent hydrolase compare
IAI46_01500 +0.7 1.0 DUF4156 domain-containing protein compare
IAI46_14265 +0.7 2.5 formyltetrahydrofolate deformylase compare
IAI46_14060 +0.7 1.3 YkgJ family cysteine cluster protein compare
IAI46_05720 +0.7 1.1 DoxX family protein compare
IAI46_04360 +0.7 4.2 Na(+)-translocating NADH-quinone reductase subunit A compare
IAI46_02870 +0.7 2.0 ribosomal protein S18-alanine N-acetyltransferase compare
IAI46_13575 +0.7 2.5 C40 family peptidase compare
IAI46_18720 +0.7 1.7 GNAT family N-acetyltransferase compare
IAI46_15830 +0.7 2.1 Tn3 family transposase compare
IAI46_09745 +0.7 1.3 antibiotic biosynthesis monooxygenase compare
IAI46_04545 +0.7 2.3 transporter compare
IAI46_11285 +0.7 2.1 TetR/AcrR family transcriptional regulator compare
IAI46_20875 +0.7 2.6 Xaa-Pro aminopeptidase compare
IAI46_24580 +0.7 4.7 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
IAI46_09365 +0.7 2.7 replication protein compare
IAI46_09480 +0.7 0.9 hypothetical protein compare
IAI46_20265 +0.7 3.5 type I methionyl aminopeptidase compare
IAI46_17180 +0.7 2.5 ABC transporter permease compare
IAI46_22385 +0.7 1.4 DUF1043 family protein compare
IAI46_17765 +0.7 3.0 phosphodiesterase compare
IAI46_13515 +0.7 1.2 carbonate dehydratase compare
IAI46_05870 +0.7 1.6 transcription antiterminator/RNA stability regulator CspE compare
IAI46_07275 +0.7 1.8 FAD-dependent oxidoreductase compare
IAI46_09085 +0.7 1.7 VTT domain-containing protein compare
IAI46_08905 +0.7 1.7 methylglyoxal synthase compare
IAI46_19970 +0.7 2.2 LysR family transcriptional regulator compare
IAI46_14665 +0.7 2.3 MAPEG family protein compare
IAI46_09635 +0.7 1.4 helix-turn-helix transcriptional regulator compare
IAI46_15940 +0.7 1.3 flagellar basal body rod protein FlgF compare
IAI46_06285 +0.7 0.6 ADP-forming succinate--CoA ligase subunit beta compare
IAI46_00635 +0.7 3.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI46_01940 +0.7 0.6 30S ribosome-binding factor RbfA compare
IAI46_07560 +0.7 2.5 threonine/homoserine exporter RhtA compare
IAI46_17225 +0.7 2.4 deoxyribonuclease IV compare
IAI46_20345 +0.7 2.4 YgdI/YgdR family lipoprotein compare
IAI46_20955 +0.7 1.8 YhcH/YjgK/YiaL family protein compare
IAI46_09165 +0.7 1.7 FAD-dependent oxidoreductase compare
IAI46_10610 +0.7 2.4 imidazolonepropionase compare
IAI46_09985 +0.7 1.8 RNA polymerase-binding protein DksA compare
IAI46_08915 +0.7 1.7 CoA-binding protein compare
IAI46_10000 +0.7 2.4 non-heme ferritin compare
IAI46_12360 +0.7 2.6 LysR family transcriptional regulator compare
IAI46_18325 +0.7 1.8 isochorismate synthase compare
IAI46_22980 +0.7 2.3 RNA polymerase sigma factor compare
IAI46_08900 +0.7 2.7 DNA helicase IV compare
IAI46_08400 +0.7 1.8 arginine ABC transporter substrate-binding protein compare
IAI46_20885 +0.7 2.2 cell division protein ZapA compare
IAI46_19985 +0.7 3.0 L-valine transporter subunit YgaH compare
IAI46_12925 +0.7 1.6 alpha-glucosidase compare
IAI46_25105 +0.7 2.2 FMN-binding protein MioC compare
IAI46_03645 +0.6 1.4 proline/glycine betaine ABC transporter permease compare
IAI46_14825 +0.6 1.4 DUF986 domain-containing protein compare
IAI46_05025 +0.6 1.2 DNA-binding protein HU-beta compare
IAI46_01540 +0.6 2.9 fumarate reductase subunit FrdC compare
IAI46_16705 +0.6 2.2 ABC transporter substrate-binding protein compare
IAI46_24185 +0.6 2.4 ABC transporter permease compare
IAI46_21420 +0.6 2.3 YggT family protein compare
IAI46_21540 +0.6 2.4 type VI secretion system contractile sheath small subunit compare
IAI46_08345 +0.6 2.0 inner membrane protein YbjM compare
IAI46_17690 +0.6 1.6 NADH-quinone oxidoreductase subunit NuoF compare
IAI46_17165 +0.6 2.1 HTH-type transcriptional regulator PuuR compare
IAI46_15785 +0.6 2.2 RNA polymerase sigma factor FliA compare
IAI46_06965 +0.6 0.9 ABC transporter ATP-binding protein compare
IAI46_05695 +0.6 1.3 toxin compare
IAI46_09280 +0.6 2.5 MacB family efflux pump subunit compare
IAI46_11240 +0.6 1.3 HTH-type transcriptional repressor PurR compare
IAI46_06650 +0.6 1.4 tRNA dihydrouridine(16) synthase DusC compare
IAI46_14910 +0.6 1.7 helix-turn-helix domain-containing protein compare
IAI46_01635 +0.6 3.5 FtsH protease activity modulator HflK compare
IAI46_25050 +0.6 2.8 ribose operon transcriptional repressor RbsR compare
IAI46_13475 +0.6 1.4 TIGR01620 family protein compare
IAI46_04425 +0.6 1.3 sigma factor-binding protein Crl compare
IAI46_09180 +0.6 2.2 hypothetical protein compare
IAI46_18155 +0.6 2.4 lytic murein transglycosylase B compare
IAI46_07030 +0.6 1.8 serine protein kinase RIO compare
IAI46_15550 +0.6 2.3 glycosyltransferase family 2 protein compare
IAI46_13900 +0.6 0.8 L-ribulose-5-phosphate 4-epimerase compare
IAI46_10915 +0.6 2.4 cytochrome c compare
IAI46_15185 +0.6 1.6 DNA-binding protein compare
IAI46_07870 +0.6 0.8 hypothetical protein compare
IAI46_20585 +0.6 2.0 DeoR/GlpR transcriptional regulator compare
IAI46_08405 +0.6 2.5 arginine ABC transporter permease ArtM compare
IAI46_09535 +0.6 1.7 hypothetical protein compare
IAI46_21200 +0.6 1.9 RNA 2',3'-cyclic phosphodiesterase compare
IAI46_18185 +0.6 2.2 GNAT family N-acetyltransferase compare
IAI46_13045 +0.6 1.8 NAD-dependent succinate-semialdehyde dehydrogenase compare


Specific Phenotypes

For 6 genes in this experiment

For stress Cadmium acetate dihydrate in Serratia liquefaciens MT49

For stress Cadmium acetate dihydrate across organisms