Experiment set1IT047 for Serratia liquefaciens MT49

Compare to:

Cadmium acetate dihydrate 40 uM, aerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI46_06315 +1.6 6.4 tol-pal system-associated acyl-CoA thioesterase compare
IAI46_09800 +1.4 7.1 beta-ketoacyl-ACP synthase II compare
IAI46_22365 +1.3 9.7 stringent starvation protein A compare
IAI46_00820 +1.3 9.1 DcrB family lipoprotein compare
IAI46_22480 +1.3 2.9 PTS IIA-like nitrogen regulatory protein PtsN compare
IAI46_02415 +1.2 3.3 hypothetical protein compare
IAI46_23265 +1.2 2.7 peptide deformylase compare
IAI46_00630 +1.1 6.2 lipid III flippase WzxE compare
IAI46_03080 +1.1 4.8 molecular chaperone DnaJ compare
IAI46_11175 +1.0 5.6 L,D-transpeptidase family protein compare
IAI46_14830 +1.0 4.7 manganese efflux pump MntP compare
IAI46_10655 +1.0 2.7 hydrolase compare
IAI46_22775 +1.0 5.3 tRNA dihydrouridine synthase DusB compare
IAI46_13870 +1.0 4.9 exoribonuclease II compare
IAI46_10795 +1.0 3.6 RNA chaperone ProQ compare
IAI46_11795 +0.9 2.1 xanthine dehydrogenase accessory protein XdhC compare
IAI46_17365 +0.9 1.7 YejL family protein compare
IAI46_14560 +0.9 2.3 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI46_09375 +0.9 2.0 TraR/DksA family transcriptional regulator compare
IAI46_10800 +0.9 5.5 carboxy terminal-processing peptidase compare
IAI46_10445 +0.9 2.1 NUDIX hydrolase compare
IAI46_11465 +0.9 2.3 electron transport complex subunit RsxG compare
IAI46_00615 +0.9 4.7 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI46_10455 +0.8 2.2 23S rRNA pseudouridine(2457) synthase RluE compare
IAI46_24895 +0.8 3.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI46_03895 +0.8 5.1 glutamate--cysteine ligase compare
IAI46_09570 +0.8 2.0 hypothetical protein compare
IAI46_12655 +0.8 2.6 LysR family transcriptional regulator compare
IAI46_00625 +0.8 4.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI46_04205 +0.8 5.7 MFS transporter compare
IAI46_11855 +0.8 2.1 sulfite exporter TauE/SafE family protein compare
IAI46_17665 +0.8 1.7 NADH-quinone oxidoreductase subunit NuoK compare
IAI46_02870 +0.7 3.8 ribosomal protein S18-alanine N-acetyltransferase compare
IAI46_05020 +0.7 6.0 endopeptidase La compare
IAI46_04805 +0.7 1.4 hypothetical protein compare
IAI46_10625 +0.7 2.3 HutD family protein compare
IAI46_08040 +0.7 2.5 acyltransferase compare
IAI46_13320 +0.7 2.1 serine protease compare
IAI46_11705 +0.7 1.6 DUF1161 domain-containing protein compare
IAI46_13620 +0.7 2.6 hypothetical protein compare
IAI46_00580 +0.7 4.3 thioredoxin TrxA compare
IAI46_12645 +0.7 1.5 DUF2946 domain-containing protein compare
IAI46_14350 +0.7 1.7 peptide-methionine (R)-S-oxide reductase MsrB compare
IAI46_20085 +0.7 4.7 MetQ/NlpA family lipoprotein compare
IAI46_14635 +0.7 2.4 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI46_00600 +0.7 4.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI46_21140 +0.7 5.1 biosynthetic arginine decarboxylase compare
IAI46_25105 +0.7 3.5 FMN-binding protein MioC compare
IAI46_19045 +0.7 1.6 GntR family transcriptional regulator compare
IAI46_02265 +0.7 1.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI46_01885 +0.7 3.8 ribosome assembly RNA-binding protein YhbY compare
IAI46_07015 +0.7 2.6 LysE family translocator compare
IAI46_15315 +0.6 1.6 succinylglutamate desuccinylase compare
IAI46_07550 +0.6 2.3 adenylate kinase compare
IAI46_16250 +0.6 2.5 transcriptional regulator RcsA compare
IAI46_16765 +0.6 1.8 type II toxin-antitoxin system PemK/MazF family toxin compare
IAI46_01635 +0.6 4.7 FtsH protease activity modulator HflK compare
IAI46_07965 +0.6 3.6 iron-sulfur cluster carrier protein ApbC compare
IAI46_23965 +0.6 4.7 gluconate operon transcriptional repressor GntR compare
IAI46_16420 +0.6 2.4 DMT family transporter compare
IAI46_01680 +0.6 2.2 DUF1471 domain-containing protein compare
IAI46_17885 +0.6 1.9 tripartite tricarboxylate transporter TctB family protein compare
IAI46_22550 +0.6 2.7 glycine dehydrogenase compare
IAI46_13025 +0.6 1.9 ABC transporter ATP-binding protein compare
IAI46_18550 +0.6 2.1 YaiI/YqxD family protein compare
IAI46_12195 +0.6 1.2 CopG family transcriptional regulator compare
IAI46_01345 +0.6 3.3 YjaG family protein compare
IAI46_05515 +0.6 1.0 fimbrial protein compare
IAI46_06145 +0.6 2.9 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_11580 +0.6 2.3 DeoR/GlpR transcriptional regulator compare
IAI46_24855 +0.6 4.6 YicC family protein compare
IAI46_04130 +0.6 5.2 murein transglycosylase D compare
IAI46_02410 +0.6 2.3 hypothetical protein compare
IAI46_14665 +0.6 2.8 MAPEG family protein compare
IAI46_02445 +0.6 2.5 hypothetical protein compare
IAI46_22405 +0.6 2.4 BolA family iron metabolism protein IbaG compare
IAI46_01940 +0.6 1.0 30S ribosome-binding factor RbfA compare
IAI46_24575 +0.6 1.8 HslU--HslV peptidase ATPase subunit compare
IAI46_05530 +0.6 2.3 type VI secretion system contractile sheath small subunit compare
IAI46_08045 +0.6 1.1 hypothetical protein compare
IAI46_10255 +0.5 1.6 stress-induced protein YchH compare
IAI46_08905 +0.5 1.9 methylglyoxal synthase compare
IAI46_11460 +0.5 1.3 electron transport complex subunit E compare
IAI46_11380 +0.5 1.4 pyridoxal kinase PdxY compare
IAI46_22695 +0.5 4.7 AsmA2 domain-containing protein YhdP compare
IAI46_05605 +0.5 2.1 recombinase family protein compare
IAI46_04960 +0.5 4.0 MFS transporter compare
IAI46_03645 +0.5 1.9 proline/glycine betaine ABC transporter permease compare
IAI46_20265 +0.5 3.8 type I methionyl aminopeptidase compare
IAI46_16065 +0.5 1.3 transcription modulator YdgT compare
IAI46_14290 +0.5 2.2 exodeoxyribonuclease III compare
IAI46_08235 +0.5 1.0 agmatinase compare
IAI46_01815 +0.5 2.5 transcriptional regulator ArgR compare
IAI46_24150 +0.5 1.2 inorganic phosphate transporter PitA compare
IAI46_16005 +0.5 1.4 protein phosphatase CheZ compare
IAI46_06650 +0.5 2.2 tRNA dihydrouridine(16) synthase DusC compare
IAI46_11585 +0.5 1.9 NUDIX domain-containing protein compare
IAI46_13475 +0.5 2.3 TIGR01620 family protein compare
IAI46_09010 +0.5 2.4 helix-turn-helix domain-containing protein compare
IAI46_23910 +0.5 2.8 DeoR/GlpR family transcriptional regulator compare
IAI46_11835 +0.5 2.1 winged helix-turn-helix transcriptional regulator compare
IAI46_10090 +0.5 2.0 sugar ABC transporter substrate-binding protein compare
IAI46_01090 +0.5 4.2 Sec-independent protein translocase subunit TatC compare
IAI46_13885 +0.5 1.5 glycyl-radical enzyme activating protein compare
IAI46_17000 +0.5 1.2 citrate lyase acyl carrier protein compare
IAI46_21420 +0.5 2.7 YggT family protein compare
IAI46_11480 +0.5 2.5 electron transport complex subunit RsxC compare
IAI46_19735 +0.5 1.9 histidine kinase compare
IAI46_08895 +0.5 2.0 YccF domain-containing protein compare
IAI46_11260 +0.5 1.3 Grx4 family monothiol glutaredoxin compare
IAI46_12870 +0.5 1.7 SDR family oxidoreductase compare
IAI46_05140 +0.5 1.5 hemolysin expression modulator Hha compare
IAI46_12995 +0.5 1.2 hypothetical protein compare
IAI46_07880 +0.5 2.7 S-formylglutathione hydrolase compare
IAI46_21445 +0.5 2.7 DUF2884 domain-containing protein compare
IAI46_10435 +0.5 1.6 high frequency lysogenization protein HflD compare
IAI46_12080 +0.5 1.0 amino acid ABC transporter ATP-binding protein compare
IAI46_19640 +0.5 2.8 outer membrane protein assembly factor BamE compare
IAI46_07110 +0.5 3.5 suppressor of fused domain protein compare
IAI46_04260 +0.5 2.7 amino acid ABC transporter permease compare
IAI46_19070 +0.5 2.0 sorbitol-6-phosphate dehydrogenase compare
IAI46_10845 +0.5 1.2 metal-dependent hydrolase compare
IAI46_04710 +0.5 3.0 recombination-associated protein RdgC compare
IAI46_12240 +0.5 1.8 Gfo/Idh/MocA family oxidoreductase compare
IAI46_11285 +0.5 1.8 TetR/AcrR family transcriptional regulator compare
IAI46_17415 +0.5 1.1 nuclear transport factor 2 family protein compare
IAI46_18040 +0.5 1.8 phosphohistidine phosphatase SixA compare
IAI46_03385 +0.5 3.3 catabolite repressor/activator compare
IAI46_17700 +0.5 2.3 NADH-quinone oxidoreductase subunit C/D compare
IAI46_18810 +0.5 2.0 TOBE domain-containing protein compare
IAI46_10890 +0.5 2.3 metal ABC transporter substrate-binding protein compare
IAI46_02360 +0.5 3.4 leucyl aminopeptidase compare
IAI46_05870 +0.5 1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI46_19360 +0.5 1.8 Fe-S cluster assembly transcriptional regulator IscR compare
IAI46_11785 +0.5 1.2 xanthine dehydrogenase small subunit compare
IAI46_09300 +0.5 1.1 AlpA family phage regulatory protein compare
IAI46_00635 +0.5 2.6 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI46_16225 +0.5 1.5 MgtC family protein compare
IAI46_13290 +0.5 2.2 hypothetical protein compare
IAI46_13500 +0.5 1.7 phage shock protein PspA compare
IAI46_20075 +0.5 2.0 methionine ABC transporter ATP-binding protein MetN compare
IAI46_01640 +0.5 3.1 protease modulator HflC compare
IAI46_12665 +0.5 1.0 aldehyde dehydrogenase family protein compare
IAI46_12765 +0.5 1.5 cytochrome c compare
IAI46_15100 +0.5 1.6 hypothetical protein compare
IAI46_21275 +0.5 1.4 hypoxanthine phosphoribosyltransferase compare
IAI46_04125 +0.5 3.2 endonuclease/exonuclease/phosphatase family protein compare
IAI46_21135 +0.5 3.0 agmatinase compare
IAI46_15115 +0.4 1.1 hypothetical protein compare
IAI46_20115 +0.4 3.0 YaeQ family protein compare
IAI46_12525 +0.4 1.2 respiratory chain complex I subunit 1 family protein compare
IAI46_15335 +0.4 2.0 aspartate aminotransferase family protein compare
IAI46_12610 +0.4 1.0 alpha/beta hydrolase compare
IAI46_10680 +0.4 1.8 DUF917 domain-containing protein compare
IAI46_06975 +0.4 1.8 hypothetical protein compare
IAI46_18730 +0.4 2.0 GNAT family N-acetyltransferase compare
IAI46_16170 +0.4 1.3 3-oxoadipate enol-lactonase compare
IAI46_15220 +0.4 1.3 hypothetical protein compare
IAI46_07125 +0.4 0.7 SDR family oxidoreductase compare
IAI46_19080 +0.4 1.5 DNA-binding transcriptional repressor compare
IAI46_12285 +0.4 1.2 Lrp/AsnC family transcriptional regulator compare
IAI46_18020 +0.4 1.3 penicillin-insensitive murein endopeptidase compare
IAI46_24620 +0.4 2.7 ferredoxin--NADP(+) reductase compare
IAI46_10330 +0.4 1.9 PAS domain-containing protein compare
IAI46_10060 +0.4 1.3 hypothetical protein compare
IAI46_00620 +0.4 1.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI46_11240 +0.4 1.7 HTH-type transcriptional repressor PurR compare
IAI46_16920 +0.4 1.8 SDR family oxidoreductase compare
IAI46_02220 +0.4 2.9 HTH-type transcriptional regulator TreR compare
IAI46_19570 +0.4 1.6 SoxR-reducing system protein RseC compare
IAI46_17345 +0.4 1.9 16S rRNA pseudouridine(516) synthase RsuA compare
IAI46_03905 +0.4 2.8 HlyC/CorC family transporter compare
IAI46_04395 +0.4 2.4 (Na+)-NQR maturation NqrM compare
IAI46_10600 +0.4 1.9 beta-lactamase family protein compare
IAI46_13205 +0.4 0.9 carbohydrate ABC transporter permease compare
IAI46_19480 +0.4 3.1 membrane-bound lytic murein transglycosylase MltF compare
IAI46_24615 +0.4 2.7 HTH domain-containing protein compare
IAI46_21930 +0.4 3.0 3',5'-cyclic-AMP phosphodiesterase compare
IAI46_11020 +0.4 1.8 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
IAI46_11775 +0.4 1.3 ROK family transcriptional regulator compare
IAI46_08080 +0.4 2.4 undecaprenyl-phosphate glucose phosphotransferase compare
IAI46_13985 +0.4 1.9 YciK family oxidoreductase compare
IAI46_15585 +0.4 1.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI46_06945 +0.4 2.2 LysR family transcriptional regulator compare
IAI46_11315 +0.4 2.3 polyurethanase compare
IAI46_09895 +0.4 1.9 thiamine kinase compare
IAI46_24385 +0.4 2.9 HTH-type transcriptional regulator HdfR compare
IAI46_04110 +0.4 1.6 2,5-didehydrogluconate reductase DkgB compare
IAI46_14315 +0.4 1.7 selenide, water dikinase SelD compare
IAI46_24380 +0.4 1.5 DUF413 domain-containing protein compare
IAI46_18785 +0.4 1.6 glycine cleavage system transcriptional repressor compare
IAI46_15510 +0.4 1.5 respiratory nitrate reductase subunit gamma compare
IAI46_07800 +0.4 1.2 cyanase compare
IAI46_14860 +0.4 1.4 hypothetical protein compare
IAI46_17390 +0.4 1.2 osmotically-inducible lipoprotein OsmE compare
IAI46_12780 +0.4 1.7 2-hydroxyacid dehydrogenase compare
IAI46_13425 +0.4 0.9 VOC family protein compare
IAI46_15875 +0.4 1.7 flagellar motor switch protein FliM compare
IAI46_13575 +0.4 1.7 C40 family peptidase compare
IAI46_07680 +0.4 1.6 response regulator transcription factor compare


Specific Phenotypes

For 7 genes in this experiment

For stress Cadmium acetate dihydrate in Serratia liquefaciens MT49

For stress Cadmium acetate dihydrate across organisms