Experiment set1IT046 for Rhizobium sp. OAE497

Compare to:

D-Sorbitol carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -6.8 -4.7 thioredoxin compare
ABIE40_RS02340 -6.6 -6.5 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS11950 -6.5 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS19415 -6.5 -10.8 phosphoenolpyruvate carboxykinase compare
ABIE40_RS00245 -6.4 -8.8 prephenate dehydratase compare
ABIE40_RS18590 -6.3 -11.4 homoserine O-succinyltransferase compare
ABIE40_RS19050 -6.1 -8.4 3-isopropylmalate dehydrogenase compare
ABIE40_RS18380 -6.0 -11.6 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS17525 -6.0 -3.5 lipoprotein compare
ABIE40_RS13330 -6.0 -8.3 2-isopropylmalate synthase compare
ABIE40_RS19040 -5.8 -5.6 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS09095 -5.8 -4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS18775 -5.8 -11.1 pyruvate carboxylase compare
ABIE40_RS09660 -5.7 -10.2 AI-2E family transporter compare
ABIE40_RS06555 -5.6 -3.3 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS18920 -5.5 -5.5 glutamate 5-kinase compare
ABIE40_RS16645 -5.5 -18.8 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS09545 -5.5 -3.7 anthranilate phosphoribosyltransferase compare
ABIE40_RS09150 -5.4 -17.1 nitrite/sulfite reductase compare
ABIE40_RS08635 -5.4 -5.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS16320 -5.3 -3.6 histidinol-phosphatase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS02725 -5.1 -3.5 histidinol dehydrogenase compare
ABIE40_RS20460 -5.1 -3.5 precorrin-3B synthase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS03660 -5.0 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -5.0 -2.9 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS10720 -4.9 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS17530 -4.9 -5.8 diaminopimelate decarboxylase compare
ABIE40_RS20450 -4.9 -3.4 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS11105 -4.9 -3.4 cobyrinate a,c-diamide synthase compare
ABIE40_RS19460 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS11175 -4.8 -3.3 cobyric acid synthase compare
ABIE40_RS06930 -4.7 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS09725 -4.7 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS10180 -4.7 -3.2 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS06560 -4.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS19440 -4.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS11165 -4.6 -3.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS09360 -4.6 -3.2 excinuclease ABC subunit UvrA compare
ABIE40_RS20440 -4.6 -3.1 cobalt-precorrin-6A reductase compare
ABIE40_RS11150 -4.5 -8.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS11495 -4.5 -3.1 acetolactate synthase 3 large subunit compare
ABIE40_RS12360 -4.5 -12.8 DUF5131 family protein compare
ABIE40_RS20435 -4.5 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS07105 -4.4 -3.6 DNA-binding protein HupB compare
ABIE40_RS11095 -4.4 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS02325 -4.3 -5.1 ornithine carbamoyltransferase compare
ABIE40_RS19450 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS17595 -4.3 -2.9 histidinol-phosphate transaminase compare
ABIE40_RS02320 -4.2 -4.1 aspartate aminotransferase family protein compare
ABIE40_RS00725 -4.2 -2.9 DNA cytosine methyltransferase compare
ABIE40_RS20455 -4.2 -2.4 precorrin-8X methylmutase compare
ABIE40_RS20430 -4.1 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS09155 -4.1 -6.8 DUF934 domain-containing protein compare
ABIE40_RS19130 -4.1 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS13410 -4.1 -6.2 anthranilate synthase compare
ABIE40_RS20905 -4.1 -7.1 IclR family transcriptional regulator compare
ABIE40_RS06270 -4.1 -8.2 amidophosphoribosyltransferase compare
ABIE40_RS11155 -4.0 -6.1 cobaltochelatase subunit CobN compare
ABIE40_RS06730 -4.0 -5.7 riboflavin synthase compare
ABIE40_RS20465 -4.0 -2.8 precorrin-6A synthase (deacetylating) compare
ABIE40_RS08005 -4.0 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS17650 -4.0 -5.4 cobaltochelatase subunit CobS compare
ABIE40_RS08140 -3.9 -15.4 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS10345 -3.9 -5.9 RNA polymerase-binding protein DksA compare
ABIE40_RS17020 -3.9 -9.5 sugar-binding transcriptional regulator compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS19445 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS10390 -3.8 -2.6 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS18925 -3.8 -6.3 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS17645 -3.7 -2.6 cobaltochelatase subunit CobT compare
ABIE40_RS11020 -3.7 -13.3 substrate-binding domain-containing protein compare
ABIE40_RS19480 -3.6 -2.5 DUF1402 family protein compare
ABIE40_RS19260 -3.6 -2.5 DNA polymerase III subunit epsilon compare
ABIE40_RS05430 -3.5 -2.4 phosphoribosylamine--glycine ligase compare
ABIE40_RS12135 -3.5 -4.2 methionine synthase compare
ABIE40_RS19700 -3.5 -2.4 MBL fold metallo-hydrolase compare
ABIE40_RS14990 -3.5 -12.9 glycosyltransferase family 2 protein compare
ABIE40_RS14955 -3.4 -10.7 sugar transferase compare
ABIE40_RS11060 -3.4 -6.1 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS00930 -3.4 -7.2 ABC transporter permease compare
ABIE40_RS08970 -3.4 -9.5 citrate synthase compare
ABIE40_RS02405 -3.4 -3.9 response regulator transcription factor compare
ABIE40_RS10155 -3.4 -2.2 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS17590 -3.4 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS03485 -3.3 -13.1 MAPEG family protein compare
ABIE40_RS16070 -3.3 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS12925 -3.2 -13.3 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS20445 -3.2 -1.5 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS02580 -3.2 -17.6 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS08425 -3.1 -3.6 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS24310 -3.1 -10.0 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS09085 -3.1 -6.2 nitrogen regulation protein NR(II) compare
ABIE40_RS18300 -3.0 -10.0 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS06725 -3.0 -6.7 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS25740 -3.0 -9.9 FadR/GntR family transcriptional regulator compare
ABIE40_RS00580 -2.9 -3.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS05680 -2.9 -7.4 cytochrome c maturation protein CcmE compare
ABIE40_RS23250 -2.9 -11.1 hypothetical protein compare
ABIE40_RS18055 -2.9 -4.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS14980 -2.9 -5.4 glycoside hydrolase family 16 protein compare
ABIE40_RS02075 -2.8 -11.3 ROK family transcriptional regulator compare
ABIE40_RS18285 -2.8 -7.1 heme exporter protein CcmB compare
ABIE40_RS16655 -2.8 -6.9 creatininase family protein compare
ABIE40_RS01930 -2.8 -1.9 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS09140 -2.8 -6.7 siroheme synthase CysG compare
ABIE40_RS29110 -2.7 -2.2 GFA family protein compare
ABIE40_RS09090 -2.7 -7.9 nitrogen regulation protein NR(I) compare
ABIE40_RS04070 -2.7 -6.5 heme o synthase compare
ABIE40_RS14850 -2.7 -8.4 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS08865 -2.7 -9.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS24690 -2.7 -3.4 transcriptional regulator NanR compare
ABIE40_RS05660 -2.6 -3.7 response regulator transcription factor compare
ABIE40_RS04215 -2.6 -3.2 sensor domain-containing phosphodiesterase compare
ABIE40_RS00935 -2.6 -6.5 ABC transporter substrate-binding protein compare
ABIE40_RS12845 -2.5 -5.1 glycosyltransferase family 4 protein compare
ABIE40_RS19360 -2.5 -4.6 double-strand break repair helicase AddA compare
ABIE40_RS04060 -2.5 -10.5 cytochrome c oxidase subunit II compare
ABIE40_RS15560 -2.5 -6.3 phosphoglycerate dehydrogenase compare
ABIE40_RS15855 -2.5 -2.5 cell division protein ZapA compare
ABIE40_RS18685 -2.4 -4.2 beta-ketoacyl-ACP reductase compare
ABIE40_RS08645 -2.4 -5.9 LL-diaminopimelate aminotransferase compare
ABIE40_RS12115 -2.4 -3.1 GntR family transcriptional regulator compare
ABIE40_RS02585 -2.4 -12.4 acetyl-CoA C-acetyltransferase compare
ABIE40_RS09540 -2.4 -6.2 peptidylprolyl isomerase compare
ABIE40_RS14855 -2.4 -6.7 NAD-dependent epimerase compare
ABIE40_RS01730 -2.4 -1.9 NifU family protein compare
ABIE40_RS18720 -2.4 -2.1 polyprenyl synthetase family protein compare
ABIE40_RS14690 -2.4 -11.8 branched-chain amino acid ABC transporter substrate-binding protein compare
ABIE40_RS14985 -2.3 -2.2 glycosyltransferase compare
ABIE40_RS04080 -2.3 -9.7 cytochrome c oxidase assembly protein compare
ABIE40_RS02590 -2.3 -11.9 FAD-dependent oxidoreductase compare
ABIE40_RS02345 -2.3 -3.3 2'-deoxycytidine 5'-triphosphate deaminase compare
ABIE40_RS05155 -2.3 -5.5 DUF5330 domain-containing protein compare
ABIE40_RS05995 -2.2 -10.2 MurR/RpiR family transcriptional regulator compare
ABIE40_RS19065 -2.2 -15.1 MFS transporter compare
ABIE40_RS09170 -2.2 -4.5 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS05685 -2.2 -11.7 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS13120 -2.2 -7.8 cytochrome c1 compare
ABIE40_RS06915 -2.2 -11.4 COX15/CtaA family protein compare
ABIE40_RS03515 -2.2 -2.6 glutamate--cysteine ligase compare
ABIE40_RS06050 -2.2 -4.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS18880 -2.2 -10.7 UDP-glucose 4-epimerase GalE compare
ABIE40_RS24380 -2.1 -9.0 FGGY-family carbohydrate kinase compare
ABIE40_RS04065 -2.1 -11.4 cytochrome c oxidase subunit I compare
ABIE40_RS00490 -2.1 -8.9 DNA polymerase I compare
ABIE40_RS18290 -2.1 -9.6 heme ABC transporter permease compare
ABIE40_RS00960 -2.1 -4.3 formyltetrahydrofolate deformylase compare
ABIE40_RS13130 -2.1 -8.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS29155 -2.1 -1.5 transport-associated protein compare
ABIE40_RS13125 -2.1 -11.8 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS03815 -2.0 -2.0 DUF6101 family protein compare
ABIE40_RS04085 -2.0 -7.3 cytochrome c oxidase subunit 3 compare
ABIE40_RS16325 -2.0 -11.8 N-formylglutamate amidohydrolase compare
ABIE40_RS11960 -2.0 -2.3 energy-dependent translational throttle protein EttA compare
ABIE40_RS18695 -1.9 -7.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE40_RS12855 -1.9 -6.9 glycosyltransferase family 2 protein compare
ABIE40_RS08980 -1.9 -4.9 transcriptional repressor LexA compare
ABIE40_RS23940 -1.9 -5.7 TetR/AcrR family transcriptional regulator compare
ABIE40_RS28765 -1.8 -1.3 chemotaxis protein CheX compare
ABIE40_RS24355 -1.8 -6.1 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS17515 -1.8 -6.0 TlpA disulfide reductase family protein compare
ABIE40_RS01765 -1.8 -4.8 [protein-PII] uridylyltransferase compare
ABIE40_RS10200 -1.8 -1.8 Grx4 family monothiol glutaredoxin compare
ABIE40_RS02895 -1.8 -2.6 response regulator compare
ABIE40_RS18280 -1.8 -2.8 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS14700 -1.8 -5.9 ABC transporter ATP-binding protein compare
ABIE40_RS14015 -1.8 -8.9 ROK family transcriptional regulator compare
ABIE40_RS00235 -1.8 -4.0 cytochrome c family protein compare
ABIE40_RS00340 -1.8 -2.5 30S ribosome-binding factor RbfA compare
ABIE40_RS24760 -1.7 -3.0 DeoR/GlpR family DNA-binding transcription regulator compare
ABIE40_RS21620 -1.7 -5.4 FadR/GntR family transcriptional regulator compare
ABIE40_RS06700 -1.7 -2.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS16570 -1.7 -2.8 tetratricopeptide repeat protein compare
ABIE40_RS09980 -1.7 -2.3 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS11910 -1.7 -7.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS05665 -1.7 -2.5 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS14715 -1.7 -7.5 branched-chain amino acid ABC transporter permease LivH compare
ABIE40_RS25155 -1.6 -9.1 S-methyl-5-thioribose-1-phosphate isomerase compare
ABIE40_RS13370 -1.6 -9.8 CDF family cation efflux transporter EmfA compare
ABIE40_RS04075 -1.6 -3.4 hypothetical protein compare
ABIE40_RS04475 -1.6 -8.9 phosphoadenylyl-sulfate reductase compare
ABIE40_RS02635 -1.6 -12.1 PAS domain-containing hybrid sensor histidine kinase/response regulator compare
ABIE40_RS06720 -1.6 -2.1 transcriptional regulator NrdR compare
ABIE40_RS16060 -1.6 -2.5 DUF465 domain-containing protein compare
ABIE40_RS03155 -1.6 -7.9 substrate-binding domain-containing protein compare
ABIE40_RS09145 -1.6 -3.3 DUF2849 domain-containing protein compare
ABIE40_RS19670 -1.6 -1.5 ABC transporter ATP-binding protein compare
ABIE40_RS28815 -1.6 -4.5 GNAT family N-acetyltransferase compare
ABIE40_RS23635 -1.6 -1.1 hypothetical protein compare
ABIE40_RS16210 -1.5 -6.5 homospermidine synthase compare
ABIE40_RS27930 -1.5 -1.2 nuclear transport factor 2 family protein compare
ABIE40_RS24490 -1.5 -1.3 flavin reductase compare
ABIE40_RS01705 -1.5 -6.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS25880 -1.5 -6.1 ROK family transcriptional regulator compare
ABIE40_RS01015 -1.5 -3.6 NrsF family protein compare
ABIE40_RS08935 -1.5 -1.7 RIP metalloprotease RseP compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Sorbitol in Rhizobium sp. OAE497

For carbon source D-Sorbitol across organisms