Experiment set1IT045 for Variovorax sp. OAS795

Compare to:

Gly-Glu carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS06575 -7.0 -4.9 trehalose-phosphatase compare
ABID97_RS20615 -6.9 -7.5 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS07775 -6.0 -4.7 phosphoribosylglycinamide formyltransferase compare
ABID97_RS16600 -6.0 -9.2 CysB family HTH-type transcriptional regulator compare
ABID97_RS02510 -5.9 -29.7 NADP-dependent malic enzyme compare
ABID97_RS05940 -5.8 -14.5 amino acid ABC transporter permease compare
ABID97_RS16595 -5.7 -4.7 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS05945 -5.5 -12.8 amino acid ABC transporter permease compare
ABID97_RS25525 -5.4 -4.5 LacI family DNA-binding transcriptional regulator compare
ABID97_RS15380 -5.4 -9.7 nitrite/sulfite reductase compare
ABID97_RS05935 -5.1 -15.4 amino acid ABC transporter substrate-binding protein compare
ABID97_RS07430 -5.0 -9.7 pantoate--beta-alanine ligase compare
ABID97_RS01565 -5.0 -14.0 DNA starvation/stationary phase protection protein compare
ABID97_RS05260 -4.9 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS17970 -4.8 -9.0 protein TolQ compare
ABID97_RS07405 -4.8 -12.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS03680 -4.7 -8.5 lysophospholipid transporter LplT compare
ABID97_RS04610 -4.7 -10.5 potassium transporter Kup compare
ABID97_RS05250 -4.7 -6.4 anthranilate synthase component I compare
ABID97_RS09180 -4.6 -3.2 DNA polymerase I compare
ABID97_RS16535 -4.3 -7.8 arginine/lysine/ornithine decarboxylase compare
ABID97_RS08570 -4.3 -6.5 ferrous iron transporter B compare
ABID97_RS25015 -4.2 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS15375 -4.2 -4.6 DUF934 domain-containing protein compare
ABID97_RS02455 -4.2 -4.6 nucleotidyltransferase family protein compare
ABID97_RS12140 -4.2 -8.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS14095 -4.1 -11.5 PAS domain S-box protein compare
ABID97_RS14625 -4.1 -5.3 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS02600 -4.0 -2.8 homoserine O-acetyltransferase compare
ABID97_RS10885 -4.0 -5.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS06345 -4.0 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS13860 -4.0 -7.3 hypothetical protein compare
ABID97_RS13990 -3.9 -2.7 amino acid aminotransferase compare
ABID97_RS08425 -3.9 -5.3 tryptophan synthase subunit alpha compare
ABID97_RS05925 -3.8 -9.7 LysR substrate-binding domain-containing protein compare
ABID97_RS24500 -3.7 -6.9 oxalyl-CoA decarboxylase compare
ABID97_RS14160 -3.6 -8.0 cell division protein ZapE compare
ABID97_RS05275 -3.6 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS03110 -3.6 -6.9 helix-turn-helix transcriptional regulator compare
ABID97_RS12180 -3.5 -2.4 hypothetical protein compare
ABID97_RS07410 -3.5 -7.2 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS23425 -3.4 -3.2 tRNA-Pro compare
ABID97_RS05370 -3.4 -4.7 ATP-binding protein compare
ABID97_RS17590 -3.4 -13.7 endopeptidase La compare
ABID97_RS17600 -3.4 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS23455 -3.3 -3.2 hypothetical protein compare
ABID97_RS28990 -3.3 -8.6 aspartate 1-decarboxylase compare
ABID97_RS07435 -3.2 -8.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS03805 -3.2 -1.9 ATP-binding protein compare
ABID97_RS24170 -3.2 -6.5 ATP-binding protein compare
ABID97_RS07415 -3.2 -13.5 quinolinate synthase NadA compare
ABID97_RS24920 -3.2 -2.5 Holliday junction branch migration protein RuvA compare
ABID97_RS23915 -3.2 -4.3 heme o synthase compare
ABID97_RS05750 -3.2 -2.2 glycosyltransferase compare
ABID97_RS23665 -3.2 -3.0 DNA-directed RNA polymerase subunit omega compare
ABID97_RS06275 -3.1 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS05755 -3.1 -2.1 glycosyltransferase compare
ABID97_RS03800 -3.1 -2.1 O-antigen ligase family protein compare
ABID97_RS16695 -3.1 -13.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS14090 -3.1 -1.8 response regulator transcription factor compare
ABID97_RS25085 -3.1 -4.1 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS16290 -3.0 -9.7 protein-glutamate O-methyltransferase CheR compare
ABID97_RS02115 -3.0 -12.6 PilW family protein compare
ABID97_RS17225 -3.0 -11.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS24055 -3.0 -4.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS05365 -3.0 -4.5 DUF4390 domain-containing protein compare
ABID97_RS15370 -2.9 -10.0 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03910 -2.9 -2.0 orotate phosphoribosyltransferase compare
ABID97_RS23220 -2.9 -2.4 glutamate synthase subunit beta compare
ABID97_RS17360 -2.9 -2.8 alpha/beta hydrolase compare
ABID97_RS23450 -2.9 -4.4 MBOAT family protein compare
ABID97_RS05765 -2.8 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS27450 -2.8 -1.6 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS06450 -2.7 -1.9 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS04500 -2.7 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS05740 -2.7 -4.0 glycosyltransferase family A protein compare
ABID97_RS02135 -2.7 -5.4 GspH/FimT family pseudopilin compare
ABID97_RS14100 -2.6 -11.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02110 -2.6 -14.6 type IV pilus modification protein PilV compare
ABID97_RS21150 -2.6 -11.8 FAD-dependent oxidoreductase compare
ABID97_RS00255 -2.5 -16.2 type IV pilus twitching motility protein PilT compare
ABID97_RS02120 -2.5 -14.5 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02125 -2.5 -19.9 PilC/PilY family type IV pilus protein compare
ABID97_RS11640 -2.5 -9.6 TetR family transcriptional regulator compare
ABID97_RS23710 -2.5 -13.9 RNase adapter RapZ compare
ABID97_RS20020 -2.4 -3.6 LacI family DNA-binding transcriptional regulator compare
ABID97_RS15590 -2.4 -2.0 disulfide bond formation protein B compare
ABID97_RS19065 -2.3 -5.6 GntR family transcriptional regulator compare
ABID97_RS17850 -2.3 -1.2 tetratricopeptide repeat protein compare
ABID97_RS14105 -2.2 -2.0 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS25340 -2.2 -9.6 apolipoprotein N-acyltransferase compare
ABID97_RS10295 -2.2 -2.1 winged helix-turn-helix transcriptional regulator compare
ABID97_RS20095 -2.2 -2.5 DNA topoisomerase IV subunit B compare
ABID97_RS27535 -2.2 -2.3 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS15360 -2.2 -6.7 GTP-binding protein compare
ABID97_RS16910 -2.2 -9.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS05670 -2.1 -1.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS04765 -2.1 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS08445 -2.1 -8.0 FimV/HubP family polar landmark protein compare
ABID97_RS23430 -2.1 -14.0 type IV-A pilus assembly ATPase PilB compare
ABID97_RS23645 -2.1 -2.6 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS03640 -2.1 -5.7 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS13450 -2.1 -3.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS10355 -2.0 -7.5 FadR/GntR family transcriptional regulator compare
ABID97_RS06190 -2.0 -5.1 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS02460 -2.0 -14.1 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS16915 -2.0 -8.1 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS23435 -2.0 -10.4 type II secretion system F family protein compare
ABID97_RS01650 -2.0 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS24705 -1.9 -6.2 response regulator compare
ABID97_RS06520 -1.9 -1.8 SAM-dependent methyltransferase compare
ABID97_RS06460 -1.9 -2.2 sigma 54-interacting transcriptional regulator compare
ABID97_RS15365 -1.9 -4.7 sulfate adenylyltransferase subunit CysD compare
ABID97_RS16920 -1.9 -10.6 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS02145 -1.9 -9.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS04760 -1.9 -2.1 SPOR domain-containing protein compare
ABID97_RS28635 -1.9 -5.9 IclR family transcriptional regulator compare
ABID97_RS20265 -1.8 -3.2 site-specific tyrosine recombinase XerD compare
ABID97_RS07000 -1.8 -8.5 threonine ammonia-lyase, biosynthetic compare
ABID97_RS23935 -1.8 -2.2 twin transmembrane helix small protein compare
ABID97_RS14890 -1.8 -4.3 acetolactate synthase small subunit compare
ABID97_RS02130 -1.8 -11.2 type IV pilin protein compare
ABID97_RS08430 -1.8 -1.7 tryptophan synthase subunit beta compare
ABID97_RS15995 -1.7 -6.7 PilZ domain-containing protein compare
ABID97_RS12440 -1.7 -8.4 CaiB/BaiF CoA-transferase family protein compare
ABID97_RS12110 -1.7 -1.6 phosphoribosyltransferase family protein compare
ABID97_RS07440 -1.7 -9.2 L-aspartate oxidase compare
ABID97_RS03915 -1.7 -6.2 DUF4124 domain-containing protein compare
ABID97_RS08775 -1.7 -2.2 ribosome small subunit-dependent GTPase A compare
ABID97_RS16690 -1.7 -6.3 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS19645 -1.7 -3.2 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS06420 -1.7 -7.1 ATP-binding protein compare
ABID97_RS01825 -1.7 -12.5 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS13570 -1.7 -5.1 IclR family transcriptional regulator compare
ABID97_RS04825 -1.7 -7.0 hypothetical protein compare
ABID97_RS09595 -1.7 -1.5 Arc family DNA-binding protein compare
ABID97_RS06315 -1.7 -11.5 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS14975 -1.7 -5.0 hypothetical protein compare
ABID97_RS01840 -1.6 -8.5 DUF1631 family protein compare
ABID97_RS08480 -1.6 -1.5 citrate synthase compare
ABID97_RS23225 -1.6 -12.6 glutamate synthase-related protein compare
ABID97_RS15580 -1.6 -5.9 sulfate ABC transporter permease subunit CysW compare
ABID97_RS02140 -1.6 -6.8 sugar transferase compare
ABID97_RS23440 -1.6 -7.8 A24 family peptidase compare
ABID97_RS13750 -1.6 -1.3 hypothetical protein compare
ABID97_RS15665 -1.6 -5.2 [protein-PII] uridylyltransferase compare
ABID97_RS17265 -1.6 -4.2 two-component system response regulator OmpR compare
ABID97_RS14850 -1.6 -3.4 P-II family nitrogen regulator compare
ABID97_RS06175 -1.6 -11.8 STAS domain-containing protein compare
ABID97_RS09935 -1.6 -6.1 hypothetical protein compare
ABID97_RS07345 -1.6 -4.6 hypothetical protein compare
ABID97_RS16560 -1.5 -7.9 response regulator compare
ABID97_RS19495 -1.5 -4.0 glucan biosynthesis protein D compare
ABID97_RS23650 -1.5 -11.1 serine/threonine-protein kinase compare
ABID97_RS14200 -1.5 -5.4 pseudouridine synthase compare
ABID97_RS09630 -1.5 -3.4 hypothetical protein compare
ABID97_RS22705 -1.5 -6.9 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS11170 -1.5 -4.9 GntR family transcriptional regulator compare
ABID97_RS17895 -1.5 -7.7 transcriptional regulator NrdR compare
ABID97_RS23380 -1.5 -9.1 lytic transglycosylase domain-containing protein compare
ABID97_RS24690 -1.5 -6.4 methyl-accepting chemotaxis protein compare
ABID97_RS05700 -1.5 -9.2 GDP-mannose 4,6-dehydratase compare
ABID97_RS09240 -1.5 -4.3 FtsX-like permease family protein compare
ABID97_RS29215 -1.5 -1.4 LysR family transcriptional regulator compare
ABID97_RS06600 -1.4 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS08440 -1.4 -5.3 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS10720 -1.4 -4.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS08240 -1.4 -2.3 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS10735 -1.4 -5.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABID97_RS23280 -1.4 -3.6 PilN domain-containing protein compare
ABID97_RS03495 -1.4 -9.1 TetR family transcriptional regulator compare
ABID97_RS15465 -1.4 -9.0 sulfate ABC transporter substrate-binding protein compare
ABID97_RS29015 -1.4 -1.4 transcriptional regulator GcvA compare
ABID97_RS20610 -1.4 -4.9 DNA-binding protein YbiB compare
ABID97_RS08710 -1.4 -5.8 polynucleotide adenylyltransferase PcnB compare
ABID97_RS02420 -1.4 -5.0 protealysin inhibitor emfourin compare
ABID97_RS06095 -1.4 -7.9 MBL fold metallo-hydrolase compare
ABID97_RS07500 -1.4 -2.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS23940 -1.4 -4.9 cytochrome c oxidase subunit 3 compare
ABID97_RS13245 -1.4 -1.2 XRE family transcriptional regulator compare
ABID97_RS04820 -1.4 -2.9 putative toxin-antitoxin system toxin component, PIN family compare
ABID97_RS14985 -1.4 -1.5 hypothetical protein compare
ABID97_RS06415 -1.4 -8.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS07850 -1.3 -6.5 ABC transporter ATP-binding protein compare
ABID97_RS13865 -1.3 -3.8 hypothetical protein compare
ABID97_RS23265 -1.3 -6.6 type IV pilus secretin PilQ compare
ABID97_RS16750 -1.3 -9.4 Rid family hydrolase compare
ABID97_RS14115 -1.3 -4.6 dihydrolipoyl dehydrogenase compare
ABID97_RS15585 -1.3 -4.7 sulfate ABC transporter ATP-binding protein compare
ABID97_RS17075 -1.3 -7.6 Kdo hydroxylase family protein compare
ABID97_RS13025 -1.3 -1.0 helix-turn-helix domain-containing protein compare
ABID97_RS22760 -1.3 -3.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS14950 -1.3 -3.2 IclR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS17595 -1.3 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS10565 -1.2 -4.1 phasin family protein compare
ABID97_RS23275 -1.2 -5.9 type 4a pilus biogenesis protein PilO compare
ABID97_RS14925 -1.2 -6.9 arginyltransferase compare
ABID97_RS05655 -1.2 -9.3 D-amino acid dehydrogenase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Gly-Glu in Variovorax sp. OAS795

For carbon source Gly-Glu across organisms