Experiment set1IT045 for Serratia liquefaciens MT49

Compare to:

No stress control, aerobic

200 most important genes:

  gene name fitness t score description  
IAI46_01650 -3.0 -2.0 adenylosuccinate synthase compare
IAI46_25195 -3.0 -2.0 phosphate signaling complex protein PhoU compare
IAI46_21325 -2.7 -2.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_08635 -2.7 -8.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_05375 -2.6 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_20900 -2.5 -7.5 phosphoglycerate dehydrogenase compare
IAI46_00725 -2.4 -2.3 tyrosine recombinase XerC compare
IAI46_20730 -2.4 -2.8 site-specific tyrosine recombinase XerD compare
IAI46_03190 -2.3 -8.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_02940 -2.2 -7.6 phosphoserine phosphatase compare
IAI46_03195 -2.2 -13.2 carbamoyl-phosphate synthase large subunit compare
IAI46_24770 -2.1 -4.5 polysaccharide deacetylase family protein compare
IAI46_08805 -2.1 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_01365 -2.0 -12.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_23685 -2.0 -2.3 ribulose-phosphate 3-epimerase compare
IAI46_00610 -2.0 -1.9 dTDP-glucose 4,6-dehydratase compare
IAI46_09740 -2.0 -5.8 dihydroorotase compare
IAI46_00735 -1.9 -7.8 DNA helicase II compare
IAI46_13915 -1.9 -4.3 orotidine-5'-phosphate decarboxylase compare
IAI46_01745 -1.9 -1.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI46_03840 -1.9 -3.8 recombinase RecA compare
IAI46_14880 -1.7 -2.5 fosfomycin resistance glutathione transferase compare
IAI46_24960 -1.7 -6.4 nitrogen regulation protein NR(I) compare
IAI46_24845 -1.7 -8.6 orotate phosphoribosyltransferase compare
IAI46_24750 -1.7 -3.5 glycosyltransferase compare
IAI46_22480 -1.7 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
IAI46_23700 -1.6 -4.7 3-dehydroquinate synthase compare
IAI46_03600 -1.6 -10.5 GTP diphosphokinase compare
IAI46_01360 -1.6 -9.4 phosphoribosylamine--glycine ligase compare
IAI46_17810 -1.6 -7.8 amidophosphoribosyltransferase compare
IAI46_19560 -1.6 -5.1 elongation factor 4 compare
IAI46_24950 -1.6 -1.1 glutamate--ammonia ligase compare
IAI46_18885 -1.6 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_09185 -1.6 -2.5 hypothetical protein compare
IAI46_13935 -1.5 -2.0 LapA family protein compare
IAI46_19475 -1.5 -11.3 phosphoribosylformylglycinamidine synthase compare
IAI46_19600 -1.5 -5.2 ATP-dependent RNA helicase SrmB compare
IAI46_11265 -1.5 -2.3 ribonuclease T compare
IAI46_25250 -1.5 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_23690 -1.5 -2.2 adenine-specific DNA-methyltransferase compare
IAI46_24645 -1.5 -5.9 6-phosphofructokinase compare
IAI46_24755 -1.4 -6.7 O-antigen ligase family protein compare
IAI46_23215 -1.4 -1.3 5S ribosomal RNA compare
IAI46_00350 -1.4 -1.0 DUF4282 domain-containing protein compare
IAI46_22745 -1.4 -1.3 type II 3-dehydroquinate dehydratase compare
IAI46_21210 -1.4 -4.5 RNA polymerase-binding protein DksA compare
IAI46_23505 -1.4 -3.4 peptidylprolyl isomerase compare
IAI46_08640 -1.4 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_06505 -1.4 -2.6 6-phosphogluconolactonase compare
IAI46_24760 -1.4 -3.6 glycosyltransferase compare
IAI46_20455 -1.3 -2.0 RNA pyrophosphohydrolase compare
IAI46_02875 -1.3 -5.9 peptide chain release factor 3 compare
IAI46_18025 -1.3 -4.4 chorismate synthase compare
IAI46_11930 -1.3 -1.2 AprI/Inh family metalloprotease inhibitor compare
IAI46_20215 -1.3 -2.7 molecular chaperone Skp compare
IAI46_12205 -1.3 -2.4 3-hydroxyacyl-ACP dehydratase FabZ compare
IAI46_03235 -1.2 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI46_02275 -1.2 -5.4 aspartate carbamoyltransferase compare
IAI46_01200 -1.2 -1.6 tRNA-Thr compare
IAI46_25110 -1.2 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_17675 -1.2 -2.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI46_24500 -1.2 -6.6 argininosuccinate lyase compare
IAI46_08185 -1.2 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_02320 -1.1 -4.6 ornithine carbamoyltransferase compare
IAI46_16190 -1.1 -1.6 hypothetical protein compare
IAI46_05370 -1.1 -3.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_03960 -1.1 -6.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
IAI46_23240 -1.1 -3.5 shikimate dehydrogenase compare
IAI46_20705 -1.1 -2.1 tRNA-Gly compare
IAI46_11305 -1.1 -1.8 DUF1289 domain-containing protein compare
IAI46_22470 -1.1 -0.7 RNA polymerase factor sigma-54 compare
IAI46_18770 -1.1 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_17415 -1.0 -1.6 nuclear transport factor 2 family protein compare
IAI46_19260 -1.0 -2.9 outer membrane protein assembly factor BamB compare
IAI46_24955 -1.0 -3.2 nitrogen regulation protein NR(II) compare
IAI46_24945 -1.0 -1.7 ribosome-dependent GTPase TypA compare
IAI46_18460 -1.0 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_05175 -1.0 -1.7 50S ribosomal protein L36 compare
IAI46_08455 -1.0 -2.1 DUF1294 domain-containing protein compare
IAI46_03985 -1.0 -5.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_00605 -1.0 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI46_16065 -0.9 -1.6 transcription modulator YdgT compare
IAI46_14060 -0.9 -2.0 YkgJ family cysteine cluster protein compare
IAI46_17695 -0.9 -1.2 NADH-quinone oxidoreductase subunit NuoE compare
IAI46_22590 -0.9 -1.0 ribosome-associated protein compare
IAI46_24510 -0.9 -5.7 acetylglutamate kinase compare
IAI46_12410 -0.9 -1.8 SDR family NAD(P)-dependent oxidoreductase compare
IAI46_14285 -0.9 -2.0 TIGR00730 family Rossman fold protein compare
IAI46_06155 -0.9 -1.2 DUF3861 domain-containing protein compare
IAI46_02120 -0.9 -2.4 type II toxin-antitoxin system RelB/DinJ family antitoxin compare
IAI46_03040 -0.9 -4.6 threonine synthase compare
IAI46_12505 -0.9 -1.5 formate hydrogenlyase maturation HycH family protein compare
IAI46_14750 -0.9 -1.8 hypothetical protein compare
IAI46_08200 -0.9 -3.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI46_24695 -0.9 -4.4 protein-export chaperone SecB compare
IAI46_19295 -0.9 -2.9 nucleoside-diphosphate kinase compare
IAI46_24665 -0.9 -3.0 envelope stress sensor histidine kinase CpxA compare
IAI46_01955 -0.9 -4.3 polyribonucleotide nucleotidyltransferase compare
IAI46_18890 -0.8 -3.5 phosphoribosylglycinamide formyltransferase compare
IAI46_08535 -0.8 -2.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI46_08130 -0.8 -1.5 ABC transporter ATP-binding protein compare
IAI46_23090 -0.8 -5.8 glucose-6-phosphate isomerase compare
IAI46_01815 -0.8 -2.1 transcriptional regulator ArgR compare
IAI46_05520 -0.8 -1.1 transposase compare
IAI46_17655 -0.8 -2.8 NADH-quinone oxidoreductase subunit M compare
IAI46_17670 -0.8 -1.8 NADH-quinone oxidoreductase subunit J compare
IAI46_17000 -0.8 -1.9 citrate lyase acyl carrier protein compare
IAI46_24505 -0.8 -5.5 argininosuccinate synthase compare
IAI46_21415 -0.8 -4.3 pyrroline-5-carboxylate reductase compare
IAI46_12585 -0.8 -1.7 hypothetical protein compare
IAI46_10800 -0.8 -3.5 carboxy terminal-processing peptidase compare
IAI46_18350 -0.8 -1.8 ATP-binding cassette domain-containing protein compare
IAI46_25160 -0.8 -1.9 F0F1 ATP synthase subunit epsilon compare
IAI46_23790 -0.8 -3.0 two-component system response regulator OmpR compare
IAI46_04430 -0.8 -3.8 glutamate 5-kinase compare
IAI46_11030 -0.8 -2.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI46_12945 -0.8 -1.7 sugar ABC transporter permease compare
IAI46_19085 -0.8 -1.8 arabinose-5-phosphate isomerase GutQ compare
IAI46_17450 -0.7 -2.4 transcriptional regulator RcsB compare
IAI46_10230 -0.7 -2.3 TetR/AcrR family transcriptional regulator compare
IAI46_12660 -0.7 -1.3 NAD(P)H-dependent oxidoreductase compare
IAI46_08195 -0.7 -2.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI46_01970 -0.7 -2.6 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_01940 -0.7 -0.9 30S ribosome-binding factor RbfA compare
IAI46_24520 -0.7 -4.5 acetylornithine deacetylase compare
IAI46_17650 -0.7 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI46_24525 -0.7 -4.7 phosphoenolpyruvate carboxylase compare
IAI46_15845 -0.7 -2.0 flagellar motor switch protein FliG compare
IAI46_07745 -0.7 -2.4 molecular chaperone compare
IAI46_10590 -0.7 -2.3 hypothetical protein compare
IAI46_03695 -0.7 -4.3 phosphoadenylyl-sulfate reductase compare
IAI46_08190 -0.7 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI46_17115 -0.7 -2.2 DUF496 family protein compare
IAI46_01220 -0.7 -1.5 tRNA-Thr compare
IAI46_05015 -0.7 -2.6 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_15190 -0.7 -1.1 hypothetical protein compare
IAI46_01960 -0.7 -4.7 lipoprotein NlpI compare
IAI46_03035 -0.7 -4.2 homoserine kinase compare
IAI46_20270 -0.7 -1.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_18755 -0.7 -2.5 esterase compare
IAI46_24985 -0.7 -3.3 DNA polymerase I compare
IAI46_11625 -0.7 -2.5 TetR/AcrR family transcriptional regulator compare
IAI46_09505 -0.7 -1.0 hypothetical protein compare
IAI46_06145 -0.7 -2.8 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_15750 -0.7 -1.4 type II toxin-antitoxin system HicA family toxin compare
IAI46_07525 -0.6 -1.8 glutamine ABC transporter ATP-binding protein GlnQ compare
IAI46_13995 -0.6 -1.8 23S rRNA pseudouridine(2605) synthase RluB compare
IAI46_02440 -0.6 -1.4 hypothetical protein compare
IAI46_03725 -0.6 -2.8 adenylyl-sulfate kinase compare
IAI46_24515 -0.6 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI46_00355 -0.6 -2.2 HIT family protein compare
IAI46_19325 -0.6 -1.3 Fe-S cluster assembly protein IscX compare
IAI46_18015 -0.6 -2.7 TSUP family transporter compare
IAI46_08215 -0.6 -2.5 ATP phosphoribosyltransferase compare
IAI46_09075 -0.6 -1.7 hypothetical protein compare
IAI46_00120 -0.6 -3.0 DNA-3-methyladenine glycosylase I compare
IAI46_04435 -0.6 -3.6 glutamate-5-semialdehyde dehydrogenase compare
IAI46_17235 -0.6 -1.6 1-phosphofructokinase compare
IAI46_15105 -0.6 -1.9 phage holin, lambda family compare
IAI46_11080 -0.6 -1.5 ABC transporter substrate-binding protein compare
IAI46_05865 -0.6 -2.7 M20 peptidase aminoacylase family protein compare
IAI46_04935 -0.6 -0.9 exodeoxyribonuclease VII small subunit compare
IAI46_11785 -0.6 -1.5 xanthine dehydrogenase small subunit compare
IAI46_03015 -0.6 -2.5 two-component system response regulator ArcA compare
IAI46_13980 -0.6 -1.6 protease SohB compare
IAI46_24690 -0.6 -2.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_11340 -0.6 -1.0 transcriptional regulator SlyA compare
IAI46_16310 -0.6 -2.7 LysR family transcriptional regulator compare
IAI46_10735 -0.6 -2.1 DUF1480 family protein compare
IAI46_07070 -0.6 -1.5 TetR/AcrR family transcriptional regulator compare
IAI46_06250 -0.6 -3.5 citrate synthase compare
IAI46_17815 -0.6 -2.6 colicin V production protein compare
IAI46_08010 -0.6 -3.8 polysaccharide export protein compare
IAI46_08235 -0.6 -1.1 agmatinase compare
IAI46_08020 -0.6 -3.0 tyrosine-protein kinase Wzc compare
IAI46_20855 -0.6 -1.8 glycine cleavage system protein GcvH compare
IAI46_22855 -0.6 -1.0 DUF1471 domain-containing protein compare
IAI46_22760 -0.6 -2.1 YhdT family protein compare
IAI46_16280 -0.6 -2.1 NAD(P)H-quinone oxidoreductase compare
IAI46_14610 -0.6 -0.8 zinc ABC transporter ATP-binding protein ZnuC compare
IAI46_22350 -0.6 -4.1 glutamate synthase small subunit compare
IAI46_14905 -0.6 -1.3 hypothetical protein compare
IAI46_03955 -0.6 -4.0 3-deoxy-7-phosphoheptulonate synthase compare
IAI46_22345 -0.6 -5.0 glutamate synthase large subunit compare
IAI46_08430 -0.6 -1.3 heavy metal-binding domain-containing protein compare
IAI46_19655 -0.6 -2.0 SsrA-binding protein SmpB compare
IAI46_18915 -0.5 -3.6 polyphosphate kinase 1 compare
IAI46_11830 -0.5 -1.6 2,5-dihydroxypyridine 5,6-dioxygenase compare
IAI46_01620 -0.5 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_14650 -0.5 -0.9 zinc ribbon domain-containing protein compare
IAI46_05765 -0.5 -2.3 fumarylacetoacetate hydrolase family protein compare
IAI46_12245 -0.5 -1.3 TIM barrel protein compare
IAI46_07390 -0.5 -2.1 hypothetical protein compare
IAI46_17705 -0.5 -2.1 NADH-quinone oxidoreductase subunit B compare
IAI46_05385 -0.5 -0.6 peptidylprolyl isomerase B compare
IAI46_12805 -0.5 -0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
IAI46_06645 -0.5 -1.3 D-2-hydroxyacid dehydrogenase family protein compare
IAI46_10890 -0.5 -2.4 metal ABC transporter substrate-binding protein compare
IAI46_20305 -0.5 -1.9 YqcC family protein compare
IAI46_24385 -0.5 -3.4 HTH-type transcriptional regulator HdfR compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in no stress control experiments