Experiment set1IT045 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium m-arsenite 1 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4156 -5.7 -2.2 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3667 -5.7 -3.4 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0523 -5.3 -1.2 Glycosyltransferase like family 2 compare
EX28DRAFT_2958 -4.6 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0111 -4.6 -1.8 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2252 -4.6 -1.8 TolA protein compare
EX28DRAFT_0091 -4.5 -1.0 hypothetical protein compare
EX28DRAFT_3276 -4.5 -4.4 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_2027 -4.4 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4155 -4.2 -4.3 DNA adenine methylase (dam) compare
EX28DRAFT_0934 -4.2 -11.4 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4397 -4.2 -9.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_2635 -4.1 -7.6 Fructose-2,6-bisphosphatase compare
EX28DRAFT_3668 -4.1 -9.7 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0538 -4.0 -6.3 histidinol-phosphate aminotransferase compare
EX28DRAFT_0108 -4.0 -1.3 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4419 -4.0 -1.8 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2651 -4.0 -5.7 glutamate 5-kinase compare
EX28DRAFT_4422 -4.0 -5.6 argininosuccinate lyase compare
EX28DRAFT_0936 -3.9 -8.5 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0167 -3.9 -1.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_4350 -3.9 -0.9 nitrogen regulation protein NR(I) compare
EX28DRAFT_2272 -3.8 -11.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0932 -3.8 -3.6 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4153 -3.8 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0933 -3.7 -10.1 tryptophan synthase, beta subunit compare
EX28DRAFT_3669 -3.7 -4.9 3-isopropylmalate dehydrogenase compare
EX28DRAFT_1122 -3.6 -10.9 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2846 -3.6 -6.1 adenylyl-sulfate kinase compare
EX28DRAFT_4418 -3.6 -8.3 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2548 -3.5 -5.6 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2531 -3.5 -5.0 endopeptidase La compare
EX28DRAFT_2650 -3.5 -7.6 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2585 -3.4 -1.8 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2916 -3.4 -6.7 diaminopimelate decarboxylase compare
EX28DRAFT_0534 -3.4 -4.7 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0537 -3.3 -9.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2117 -3.3 -12.4 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_1123 -3.3 -7.6 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_3730 -3.3 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_4292 -3.3 -8.1 Acetyltransferase (GNAT) domain compare
EX28DRAFT_4152 -3.2 -1.5 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_4331 -3.2 -8.1 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_0046 -3.2 -1.9 shikimate dehydrogenase compare
EX28DRAFT_2893 -3.2 -4.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_1124 -3.2 -10.0 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1986 -3.2 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4123 -3.2 -3.5 transcriptional regulator, DeoR family compare
EX28DRAFT_0291 -3.1 -3.2 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_2864 -3.1 -10.6 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3614 -3.1 -8.0 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2851 -3.1 -2.9 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4436 -3.1 -7.7 Transcriptional regulator compare
EX28DRAFT_4271 -3.1 -1.0 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4437 -3.1 -3.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0535 -3.1 -5.2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_0272 -3.1 -1.7 phosphohistidine phosphatase, SixA compare
EX28DRAFT_3670 -3.1 -7.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_4544 -3.0 -0.7 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2701 -3.0 -7.6 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4421 -3.0 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4341 -2.9 -2.9 Protein-disulfide isomerase compare
EX28DRAFT_2702 -2.9 -8.1 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_4120 -2.9 -6.4 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_4443 -2.9 -9.4 dihydroxy-acid dehydratase compare
EX28DRAFT_0861 -2.9 -4.8 Response regulator receiver domain compare
EX28DRAFT_3275 -2.8 -9.8 Glutamate synthase domain 2 compare
EX28DRAFT_0206 -2.8 -6.1 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_0334 -2.8 -2.5 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2474 -2.8 -8.6 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_3224 -2.8 -4.2 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3046 -2.8 -7.2 cystathionine beta-lyase, bacterial compare
EX28DRAFT_4386 -2.7 -3.0 Signal transduction histidine kinase compare
EX28DRAFT_0726 -2.7 -2.7 C-terminal peptidase (prc) compare
EX28DRAFT_1685 -2.7 -6.6 FeS assembly ATPase SufC compare
EX28DRAFT_1121 -2.7 -2.8 Sugar kinases, ribokinase family compare
EX28DRAFT_2917 -2.7 -3.1 Transcriptional regulator compare
EX28DRAFT_3711 -2.7 -0.8 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4478 -2.7 -4.0 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2240 -2.7 -2.0 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_4170 -2.7 -7.3 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0330 -2.7 -4.5 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_3728 -2.7 -2.5 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_0166 -2.6 -12.4 polyphosphate kinase 1 compare
EX28DRAFT_3645 -2.6 -5.6 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2043 -2.6 -6.0 transcriptional regulator, AsnC family compare
EX28DRAFT_2216 -2.6 -7.2 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_2050 -2.6 -10.1 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_3081 -2.5 -14.3 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_3883 -2.5 -2.5 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_4444 -2.5 -5.8 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_3729 -2.5 -5.0 pantoate--beta-alanine ligase compare
EX28DRAFT_0207 -2.5 -12.0 sulfate ABC transporter, permease protein CysW compare
EX28DRAFT_2169 -2.5 -8.4 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2999 -2.5 -3.6 Fe-S cluster protector protein compare
EX28DRAFT_0935 -2.5 -4.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_4411 -2.5 -7.2 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0132 -2.5 -3.4 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0540 -2.4 -5.1 ATP phosphoribosyltransferase compare
EX28DRAFT_3461 -2.4 -3.6 ornithine carbamoyltransferase compare
EX28DRAFT_0738 -2.4 -2.2 Predicted membrane protein compare
EX28DRAFT_0038 -2.4 -2.3 K+ transport systems, NAD-binding component compare
EX28DRAFT_1882 -2.4 -6.1 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_2853 -2.3 -6.3 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0205 -2.3 -9.8 sulfate/thiosulfate-binding protein compare
EX28DRAFT_4493 -2.3 -3.9 Transcriptional regulator compare
EX28DRAFT_4184 -2.3 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4507 -2.3 -4.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1682 -2.3 -8.7 SufE protein probably involved in Fe-S center assembly compare
EX28DRAFT_1871 -2.3 -7.6 BssS protein family compare
EX28DRAFT_3368 -2.2 -1.2 tRNA dimethylallyltransferase compare
EX28DRAFT_3724 -2.2 -5.4 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_2265 -2.2 -0.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3613 -2.2 -4.8 RNA compare
EX28DRAFT_2938 -2.2 -2.2 tRNA compare
EX28DRAFT_0764 -2.2 -4.4 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_2699 -2.2 -5.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0292 -2.2 -1.1 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1881 -2.2 -11.6 Membrane glycosyltransferase compare
EX28DRAFT_0539 -2.2 -3.9 histidinol dehydrogenase compare
EX28DRAFT_3297 -2.2 -6.6 ribonuclease, Rne/Rng family compare
EX28DRAFT_0536 -2.2 -1.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0208 -2.1 -5.5 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_4542 -2.1 -2.4 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_4442 -2.1 -5.1 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3401 -2.1 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_3671 -2.1 -2.9 RNA compare
EX28DRAFT_1684 -2.1 -8.2 FeS assembly protein SufD compare
EX28DRAFT_4446 -2.1 -6.6 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2852 -2.1 -7.8 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_4440 -2.1 -7.0 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_1374 -2.0 -1.3 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_0322 -2.0 -9.0 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_1941 -2.0 -1.7 Protein of unknown function (DUF4089) compare
EX28DRAFT_0529 -2.0 -3.1 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0327 -2.0 -7.4 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_3725 -2.0 -9.8 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
EX28DRAFT_1719 -2.0 -1.4 integration host factor, alpha subunit compare
EX28DRAFT_2546 -2.0 -6.3 2-dehydropantoate 2-reductase compare
EX28DRAFT_1683 -2.0 -9.8 cysteine desulfurases, SufSfamily compare
EX28DRAFT_3898 -2.0 -1.8 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_1623 -1.9 -5.6 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_1686 -1.9 -9.7 FeS assembly protein SufB compare
EX28DRAFT_2225 -1.9 -6.2 3-carboxymuconate cyclase compare
EX28DRAFT_1827 -1.9 -7.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
EX28DRAFT_1626 -1.9 -2.2 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_4158 -1.8 -3.5 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_4420 -1.8 -0.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0323 -1.8 -6.1 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0214 -1.8 -4.1 cysteine synthase A compare
EX28DRAFT_2008 -1.8 -4.9 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0331 -1.8 -2.7 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0533 -1.8 -3.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_3901 -1.8 -7.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_4066 -1.7 -6.5 Universal stress protein B (UspB) compare
EX28DRAFT_4297 -1.7 -1.5 cell division ATP-binding protein FtsE compare
EX28DRAFT_3267 -1.7 -8.7 Leucyl aminopeptidase compare
EX28DRAFT_0440 -1.7 -8.0 ATPases involved in chromosome partitioning compare
EX28DRAFT_0362 -1.7 -7.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_3058 -1.7 -3.2 Signal transduction histidine kinase compare
EX28DRAFT_0325 -1.7 -4.3 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0970 -1.7 -2.0 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_4452 -1.7 -1.9 thioredoxin compare
EX28DRAFT_0328 -1.7 -1.6 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3087 -1.7 -7.7 acyl-phosphate glycerol 3-phosphate acyltransferase compare
EX28DRAFT_0332 -1.7 -6.5 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0228 -1.7 -1.3 tRNA compare
EX28DRAFT_2288 -1.7 -1.9 negative regulator of replication initiation SeqA compare
EX28DRAFT_0948 -1.6 -1.6 hypothetical protein compare
EX28DRAFT_3864 -1.6 -6.1 Membrane-bound metallopeptidase compare
EX28DRAFT_2847 -1.6 -8.3 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_3089 -1.6 -1.0 Transcriptional regulators compare
EX28DRAFT_4296 -1.6 -2.4 putative protein insertion permease FtsX compare
EX28DRAFT_3647 -1.6 -4.7 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0531 -1.6 -5.4 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2974 -1.6 -6.1 transketolase, bacterial and yeast compare
EX28DRAFT_1834 -1.6 -4.5 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_1624 -1.6 -2.8 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_4319 -1.5 -6.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0725 -1.5 -1.9 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_0074 -1.5 -7.0 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_0180 -1.5 -4.1 Peroxiredoxin compare
EX28DRAFT_0333 -1.5 -7.0 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0076 -1.5 -3.1 elongation factor 4 compare
EX28DRAFT_2945 -1.5 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_3900 -1.5 -1.8 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_0073 -1.5 -1.1 Negative regulator of sigma E activity compare
EX28DRAFT_2217 -1.5 -6.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
EX28DRAFT_3079 -1.5 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2848 -1.4 -6.9 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_4266 -1.4 -1.5 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_1493 -1.4 -3.8 Transcriptional regulator/sugar kinase compare
EX28DRAFT_1658 -1.4 -5.7 Cyclopropane fatty acid synthase and related methyltransferases compare
EX28DRAFT_2520 -1.4 -7.9 ABC-type multidrug transport system, ATPase and permease components compare
EX28DRAFT_2331 -1.4 -6.6 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_3616 -1.4 -1.8 threonine synthase compare
EX28DRAFT_2530 -1.4 -2.1 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_3082 -1.4 -3.1 Uncharacterized conserved protein compare
EX28DRAFT_0769 -1.4 -0.9 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_1500 -1.4 -1.8 Predicted transcriptional regulators compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium m-arsenite across organisms