Experiment set1IT044 for Pseudomonas simiae WCS417

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18585 -6.0 -5.9 3-isopropylmalate dehydrogenase compare
PS417_23805 -5.9 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_02005 -5.7 -12.8 glutamate synthase compare
PS417_25720 -5.6 -8.3 anthranilate synthase component II compare
PS417_18595 -5.6 -6.7 3-isopropylmalate dehydratase compare
PS417_04415 -5.6 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18600 -5.5 -3.8 isopropylmalate isomerase compare
PS417_23800 -5.5 -11.2 ketol-acid reductoisomerase compare
PS417_26740 -5.4 -11.6 homoserine acetyltransferase compare
PS417_04420 -5.4 -12.0 histidinol dehydrogenase compare
PS417_23545 -5.2 -5.0 gamma-glutamyl kinase compare
PS417_11000 -5.1 -6.0 L-arabonate dehydratase (EC 4.2.1.25) (from data) conserved
PS417_01850 -5.0 -9.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01565 -5.0 -6.5 imidazole glycerol phosphate synthase compare
PS417_24745 -5.0 -5.9 gamma-glutamyl phosphate reductase compare
PS417_25725 -5.0 -16.7 anthranilate synthase component I compare
PS417_18560 -4.8 -12.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27795 -4.8 -2.2 orotate phosphoribosyltransferase compare
PS417_23110 -4.8 -10.7 2-isopropylmalate synthase compare
PS417_16465 -4.6 -12.9 sirohydrochlorin ferrochelatase compare
PS417_11010 -4.6 -9.8 FAH family protein conserved
PS417_23810 -4.5 -12.1 acetolactate synthase 3 catalytic subunit compare
PS417_02000 -4.5 -13.5 glutamate synthase compare
PS417_02510 -4.5 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12855 -4.4 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01575 -4.4 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -4.3 -3.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_00185 -4.1 -6.8 tryptophan synthase subunit beta compare
PS417_23995 -4.1 -1.8 preprotein translocase subunit SecG compare
PS417_11015 -3.9 -5.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) conserved
PS417_12290 -3.9 -9.9 sulfite reductase compare
PS417_27040 -3.9 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_26745 -3.7 -6.1 methionine biosynthesis protein MetW compare
PS417_25715 -3.7 -7.5 anthranilate phosphoribosyltransferase compare
PS417_26995 -3.7 -12.1 phosphoserine phosphatase compare
PS417_26730 -3.6 -2.3 pyrroline-5-carboxylate reductase compare
PS417_02415 -3.6 -6.6 phosphoserine phosphatase compare
PS417_24155 -3.6 -2.5 ATP-binding protein compare
PS417_18530 -3.6 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_05595 -3.6 -9.4 ornithine carbamoyltransferase compare
PS417_27195 -3.5 -2.1 N-acetylglutamate synthase compare
PS417_25710 -3.4 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_26890 -3.4 -5.7 dihydroxy-acid dehydratase compare
PS417_20125 -3.3 -6.2 phosphoribosylglycinamide formyltransferase compare
PS417_07640 -3.1 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20985 -3.1 -5.4 porin compare
PS417_01580 -3.1 -1.5 imidazole glycerol phosphate synthase compare
PS417_00180 -3.0 -4.2 tryptophan synthase subunit alpha compare
PS417_01570 -3.0 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08125 -3.0 -2.3 prephenate dehydratase compare
PS417_20160 -2.8 -4.8 cysteine synthase compare
PS417_01605 -2.7 -2.4 phosphoglycerate mutase compare
PS417_27835 -2.7 -7.3 endoribonuclease compare
PS417_21020 -2.7 -15.4 phosphoenolpyruvate synthase compare
PS417_11045 -2.6 -9.9 3-oxoacyl-ACP reductase conserved
PS417_11005 -2.6 -7.7 L-arabinose transporter (from data) conserved
PS417_04365 -2.5 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26985 -2.5 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11020 -2.2 -7.6 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
PS417_18690 -2.1 -3.6 aromatic amino acid aminotransferase compare
PS417_01995 -2.1 -3.0 hypothetical protein compare
PS417_16570 -2.0 -10.4 isocitrate lyase compare
PS417_02225 -1.9 -4.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23775 -1.9 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_01210 -1.8 -8.0 hypothetical protein compare
PS417_11030 -1.8 -9.1 L-arabinose transporter ATP-binding protein conserved
PS417_22520 -1.7 -3.5 histidine kinase compare
PS417_21705 -1.7 -5.8 arginine N-succinyltransferase compare
PS417_26040 -1.7 -5.3 malate synthase compare
PS417_01560 -1.6 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_06375 -1.6 -1.4 deoxycytidine triphosphate deaminase compare
PS417_12310 -1.6 -9.7 methionine synthase compare
PS417_27435 -1.6 -7.3 polyphosphate kinase compare
PS417_27705 -1.6 -2.3 amino acid dehydrogenase compare
PS417_04650 -1.6 -1.7 D-alanine--D-alanine ligase compare
PS417_04380 -1.5 -1.9 ABC transporter permease compare
PS417_05570 -1.5 -4.7 DeoR faimly transcriptional regulator compare
PS417_05165 -1.4 -4.2 cytosol aminopeptidase compare
PS417_27105 -1.4 -6.3 spermidine/putrescine ABC transporter permease compare
PS417_22385 -1.4 -8.8 quinolinate synthase A compare
PS417_13510 -1.4 -1.9 polyketide cyclase compare
PS417_04270 -1.3 -8.4 ribonuclease G compare
PS417_23770 -1.3 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_11025 -1.3 -5.4 sugar ABC transporter substrate-binding protein conserved
PS417_21035 -1.3 -7.9 multidrug transporter compare
PS417_26990 -1.3 -1.5 RNA pyrophosphohydrolase compare
PS417_09235 -1.2 -1.5 molecular chaperone compare
PS417_02485 -1.2 -4.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21125 -1.2 -7.5 phosphoadenosine phosphosulfate reductase compare
PS417_01710 -1.2 -4.7 histidine utilization repressor compare
PS417_12565 -1.2 -3.4 2-dehydro-3-deoxygluconokinase compare
PS417_27305 -1.2 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22115 -1.2 -3.8 transcriptional regulator compare
PS417_27010 -1.2 -6.4 threonine dehydratase compare
PS417_07170 -1.2 -3.6 hypothetical protein compare
PS417_23900 -1.2 -7.7 poly(A) polymerase compare
PS417_08230 -1.1 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_06685 -1.1 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_06895 -1.1 -3.6 DNA-binding protein compare
PS417_21700 -1.1 -3.0 arginine N-succinyltransferase compare
PS417_07595 -1.0 -4.0 PasA protein compare
PS417_08245 -1.0 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04410 -1.0 -1.5 hypothetical protein compare
PS417_27115 -1.0 -5.0 putrescine ABC transporter, ATPase component (from data) compare
PS417_03925 -1.0 -5.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_08225 -1.0 -4.1 acetolactate synthase compare
PS417_24835 -1.0 -4.4 hypothetical protein compare
PS417_24800 -1.0 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_19415 -1.0 -2.5 allantoinase compare
PS417_21335 -1.0 -3.5 sugar ABC transporter substrate-binding protein compare
PS417_15650 -1.0 -2.0 glutamine amidotransferase compare
PS417_22565 -1.0 -1.5 formyltetrahydrofolate deformylase compare
PS417_20665 -0.9 -4.8 hypothetical protein compare
PS417_18355 -0.9 -6.1 DNA-binding protein compare
PS417_27035 -0.9 -3.4 FAD-linked oxidase compare
PS417_27110 -0.9 -3.3 spermidine/putrescine ABC transporter permease compare
PS417_21210 -0.9 -1.7 amidotransferase compare
PS417_26510 -0.9 -5.4 5,10-methylenetetrahydrofolate reductase compare
PS417_08195 -0.9 -4.6 hypothetical protein compare
PS417_08205 -0.9 -3.4 acetyltransferase compare
PS417_22450 -0.8 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_16990 -0.8 -4.8 acyl-CoA dehydrogenase compare
PS417_21425 -0.8 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_24935 -0.8 -0.7 hypothetical protein compare
PS417_10040 -0.8 -1.0 MFS transporter compare
PS417_18590 -0.8 -2.2 SAM-dependent methyltransferase compare
PS417_21510 -0.8 -1.6 histidine kinase compare
PS417_03895 -0.8 -2.6 methyltransferase compare
PS417_23375 -0.8 -1.8 cytochrome C oxidase compare
PS417_26390 -0.8 -1.1 acyltransferase compare
PS417_22060 -0.8 -1.4 hypothetical protein compare
PS417_02255 -0.8 -2.0 lipopolysaccharide kinase compare
PS417_05455 -0.7 -3.8 XRE family transcriptional regulator compare
PS417_07950 -0.7 -1.5 MFS transporter compare
PS417_08685 -0.7 -1.7 flagellar hook-length control protein FliK compare
PS417_04180 -0.7 -2.3 GntR family transcriptional regulator compare
PS417_27125 -0.7 -4.9 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_01285 -0.7 -1.7 haloacid dehalogenase compare
PS417_19605 -0.7 -1.5 hypothetical protein compare
PS417_23615 -0.7 -1.9 sulfate transporter compare
PS417_07560 -0.7 -1.1 universal stress protein UspA compare
PS417_23725 -0.7 -2.4 methylmalonate-semialdehyde dehydrogenase compare
PS417_08155 -0.7 -1.1 integration host factor subunit beta compare
PS417_05160 -0.7 -0.7 DNA polymerase III subunit chi compare
PS417_12245 -0.7 -2.2 GNAT family acetyltransferase compare
PS417_20185 -0.7 -1.7 ketosteroid isomerase compare
PS417_12660 -0.7 -1.8 hypothetical protein compare
PS417_27585 -0.7 -1.3 diaminopimelate epimerase compare
PS417_17565 -0.7 -1.8 branched-chain amino acid aminotransferase compare
PS417_05010 -0.7 -1.7 IclR family transcriptional regulator compare
PS417_21690 -0.7 -3.6 N-succinylarginine dihydrolase compare
PS417_07165 -0.7 -2.9 dihydrodipicolinate synthase compare
PS417_19065 -0.7 -1.1 monooxygenase compare
PS417_13165 -0.7 -2.2 peroxidase compare
PS417_10535 -0.7 -3.7 hypothetical protein compare
PS417_24765 -0.7 -2.3 membrane protein compare
PS417_04875 -0.7 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_27875 -0.7 -4.2 histidine kinase compare
PS417_06395 -0.7 -1.4 amino acid transporter compare
PS417_08620 -0.7 -0.8 hypothetical protein compare
PS417_18755 -0.6 -1.7 CrtK compare
PS417_00045 -0.6 -1.8 glycerol acyltransferase compare
PS417_04500 -0.6 -0.9 hypothetical protein compare
PS417_18360 -0.6 -1.2 hypothetical protein compare
PS417_08135 -0.6 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13800 -0.6 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_21340 -0.6 -2.1 short-chain dehydrogenase compare
PS417_05100 -0.6 -1.7 RNA polymerase sigma factor compare
PS417_00960 -0.6 -1.4 transcriptional regulator compare
PS417_00160 -0.6 -1.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_21870 -0.6 -2.0 glycerophosphodiester phosphodiesterase compare
PS417_23095 -0.6 -0.9 exodeoxyribonuclease compare
PS417_24570 -0.6 -2.2 AsnC family transcriptional regulator compare
PS417_07420 -0.6 -1.8 restriction endonuclease compare
PS417_23360 -0.6 -0.9 hypothetical protein compare
PS417_26240 -0.6 -1.4 N-methylproline demethylase compare
PS417_13205 -0.6 -1.3 isochorismate-pyruvate lyase compare
PS417_10220 -0.6 -2.8 hypothetical protein compare
PS417_01920 -0.6 -1.6 ATP-dependent protease subunit HslV compare
PS417_22195 -0.6 -2.7 peptidase compare
PS417_09470 -0.6 -0.7 hypothetical protein compare
PS417_22445 -0.6 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_15390 -0.6 -1.4 hypothetical protein compare
PS417_12200 -0.6 -2.3 microcin ABC transporter permease compare
PS417_24785 -0.6 -1.7 nucleoside-diphosphate sugar epimerase compare
PS417_11400 -0.6 -0.9 phosphoglycerate mutase compare
PS417_07305 -0.6 -1.7 3-beta hydroxysteroid dehydrogenase compare
PS417_22630 -0.6 -2.0 hypothetical protein compare
PS417_06770 -0.6 -3.5 multidrug transporter compare
PS417_16350 -0.6 -3.1 competence protein ComEC compare
PS417_26085 -0.6 -2.4 peptidase compare
PS417_21480 -0.6 -1.0 23S rRNA pseudouridylate synthase compare
PS417_10145 -0.6 -1.4 hypothetical protein compare
PS417_04860 -0.6 -3.0 ATPase compare
PS417_21750 -0.6 -4.7 acetyl-CoA synthetase compare
PS417_04375 -0.6 -1.5 ABC transporter ATP-binding protein compare
PS417_01180 -0.5 -3.0 ribosomal protein S6 modification protein compare
PS417_07840 -0.5 -1.5 hypothetical protein compare
PS417_20030 -0.5 -2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_25790 -0.5 -2.3 aminoglycoside phosphotransferase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Arabinose in Pseudomonas simiae WCS417

For carbon source L-Arabinose across organisms