Experiment set1IT044 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium m-arsenite 1 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0331 -7.8 -2.9 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_4123 -6.3 -2.7 transcriptional regulator, DeoR family compare
EX28DRAFT_4292 -5.9 -6.4 Acetyltransferase (GNAT) domain compare
EX28DRAFT_3729 -5.8 -6.6 pantoate--beta-alanine ligase compare
EX28DRAFT_4478 -5.7 -3.8 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_3728 -5.5 -3.1 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_0108 -5.5 -1.2 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2851 -5.3 -2.5 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_0111 -5.2 -1.6 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4422 -4.9 -5.0 argininosuccinate lyase compare
EX28DRAFT_2893 -4.8 -6.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_2240 -4.7 -2.4 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0534 -4.7 -4.6 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_2958 -4.6 -1.4 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3754 -4.5 -1.0 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0933 -4.5 -9.0 tryptophan synthase, beta subunit compare
EX28DRAFT_0091 -4.4 -0.9 hypothetical protein compare
EX28DRAFT_3669 -4.4 -5.4 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3668 -4.2 -6.0 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0726 -4.2 -2.9 C-terminal peptidase (prc) compare
EX28DRAFT_0935 -4.2 -6.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3275 -4.2 -14.4 Glutamate synthase domain 2 compare
EX28DRAFT_1719 -4.2 -1.3 integration host factor, alpha subunit compare
EX28DRAFT_0537 -4.1 -10.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2531 -4.1 -5.3 endopeptidase La compare
EX28DRAFT_4152 -4.1 -1.2 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_0538 -4.1 -5.7 histidinol-phosphate aminotransferase compare
EX28DRAFT_2635 -3.9 -8.4 Fructose-2,6-bisphosphatase compare
EX28DRAFT_2117 -3.9 -10.7 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_3667 -3.9 -3.9 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_3276 -3.9 -2.8 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_4437 -3.8 -3.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3670 -3.8 -8.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_4350 -3.8 -0.8 nitrogen regulation protein NR(I) compare
EX28DRAFT_3614 -3.7 -7.4 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_1121 -3.7 -2.9 Sugar kinases, ribokinase family compare
EX28DRAFT_0536 -3.7 -2.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_3368 -3.7 -1.1 tRNA dimethylallyltransferase compare
EX28DRAFT_4397 -3.7 -5.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_1122 -3.7 -9.4 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2043 -3.6 -7.3 transcriptional regulator, AsnC family compare
EX28DRAFT_0214 -3.6 -3.8 cysteine synthase A compare
EX28DRAFT_2864 -3.6 -7.1 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_1882 -3.6 -4.9 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_4418 -3.6 -5.7 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0934 -3.6 -10.2 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_2252 -3.6 -1.7 TolA protein compare
EX28DRAFT_4331 -3.5 -9.1 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_1124 -3.5 -8.1 sucrose-6-phosphate hydrolase compare
EX28DRAFT_4493 -3.5 -3.8 Transcriptional regulator compare
EX28DRAFT_0535 -3.5 -3.3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2651 -3.4 -5.0 glutamate 5-kinase compare
EX28DRAFT_0936 -3.4 -5.3 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_1123 -3.3 -6.4 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2702 -3.3 -5.6 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_3224 -3.3 -3.2 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_2916 -3.2 -5.9 diaminopimelate decarboxylase compare
EX28DRAFT_2272 -3.2 -7.9 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_2701 -3.2 -6.7 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4341 -3.2 -2.5 Protein-disulfide isomerase compare
EX28DRAFT_0323 -3.1 -5.1 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0764 -3.1 -5.7 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_1986 -3.1 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4156 -3.1 -2.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4120 -3.1 -4.4 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_4386 -3.0 -2.3 Signal transduction histidine kinase compare
EX28DRAFT_2027 -3.0 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4443 -3.0 -8.0 dihydroxy-acid dehydratase compare
EX28DRAFT_3519 -2.9 -1.8 Predicted transcriptional regulators compare
EX28DRAFT_4446 -2.9 -6.1 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_3285 -2.9 -3.5 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3645 -2.9 -3.8 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2243 -2.9 -3.8 cation diffusion facilitator family transporter compare
EX28DRAFT_0932 -2.9 -4.3 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4544 -2.8 -0.6 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_4421 -2.8 -0.6 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2721 -2.8 -3.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0166 -2.8 -8.2 polyphosphate kinase 1 compare
EX28DRAFT_1684 -2.8 -8.5 FeS assembly protein SufD compare
EX28DRAFT_2216 -2.8 -6.3 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_2118 -2.8 -2.4 arsenate reductase (glutaredoxin) compare
EX28DRAFT_0533 -2.7 -3.9 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_2650 -2.7 -5.1 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3081 -2.7 -12.8 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_4297 -2.7 -1.6 cell division ATP-binding protein FtsE compare
EX28DRAFT_3079 -2.7 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0321 -2.7 -1.0 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0046 -2.7 -1.5 shikimate dehydrogenase compare
EX28DRAFT_4444 -2.7 -4.6 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_4411 -2.6 -6.2 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0167 -2.6 -1.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_3711 -2.6 -0.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0205 -2.6 -8.8 sulfate/thiosulfate-binding protein compare
EX28DRAFT_4436 -2.6 -2.9 Transcriptional regulator compare
EX28DRAFT_0206 -2.6 -5.5 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_2917 -2.6 -2.8 Transcriptional regulator compare
EX28DRAFT_4507 -2.5 -3.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0322 -2.5 -6.2 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_3730 -2.5 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_0324 -2.5 -2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_3883 -2.5 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2474 -2.5 -5.9 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_4155 -2.5 -3.1 DNA adenine methylase (dam) compare
EX28DRAFT_0073 -2.5 -1.0 Negative regulator of sigma E activity compare
EX28DRAFT_0539 -2.5 -3.8 histidinol dehydrogenase compare
EX28DRAFT_1686 -2.5 -8.2 FeS assembly protein SufB compare
EX28DRAFT_4153 -2.5 -1.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4170 -2.4 -5.2 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_2853 -2.4 -5.1 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_3401 -2.4 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0333 -2.4 -6.2 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_2846 -2.3 -4.7 adenylyl-sulfate kinase compare
EX28DRAFT_3725 -2.3 -14.1 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
EX28DRAFT_4419 -2.3 -1.4 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4440 -2.3 -5.8 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_0207 -2.3 -5.5 sulfate ABC transporter, permease protein CysW compare
EX28DRAFT_2938 -2.3 -2.0 tRNA compare
EX28DRAFT_1623 -2.3 -4.6 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_2530 -2.2 -2.5 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_0132 -2.2 -3.0 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_2265 -2.2 -0.6 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0861 -2.2 -2.5 Response regulator receiver domain compare
EX28DRAFT_4296 -2.2 -3.4 putative protein insertion permease FtsX compare
EX28DRAFT_0540 -2.1 -3.9 ATP phosphoribosyltransferase compare
EX28DRAFT_3046 -2.1 -4.6 cystathionine beta-lyase, bacterial compare
EX28DRAFT_4442 -2.1 -4.6 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_0292 -2.1 -1.0 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1871 -2.0 -7.2 BssS protein family compare
EX28DRAFT_0972 -2.0 -1.8 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1682 -2.0 -5.7 SufE protein probably involved in Fe-S center assembly compare
EX28DRAFT_2699 -2.0 -5.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0440 -2.0 -7.0 ATPases involved in chromosome partitioning compare
EX28DRAFT_1596 -2.0 -0.8 Protein of unknown function (DUF1019) compare
EX28DRAFT_0327 -2.0 -6.0 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_3879 -2.0 -2.6 Glycosyltransferase compare
EX28DRAFT_1683 -2.0 -8.1 cysteine desulfurases, SufSfamily compare
EX28DRAFT_0328 -2.0 -1.5 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3334 -2.0 -2.4 Uncharacterized protein involved in tolerance to divalent cations compare
EX28DRAFT_2546 -2.0 -4.7 2-dehydropantoate 2-reductase compare
EX28DRAFT_3461 -1.9 -2.8 ornithine carbamoyltransferase compare
EX28DRAFT_0362 -1.9 -8.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_4384 -1.9 -2.9 Superoxide dismutase compare
EX28DRAFT_0208 -1.9 -3.5 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_3297 -1.9 -4.4 ribonuclease, Rne/Rng family compare
EX28DRAFT_3408 -1.9 -3.1 Uncharacterized conserved protein compare
EX28DRAFT_0330 -1.9 -2.3 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2169 -1.9 -4.5 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2050 -1.9 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_0531 -1.8 -4.3 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0329 -1.8 -4.1 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_1881 -1.8 -8.9 Membrane glycosyltransferase compare
EX28DRAFT_3864 -1.8 -5.9 Membrane-bound metallopeptidase compare
EX28DRAFT_3724 -1.8 -4.5 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_2225 -1.8 -6.4 3-carboxymuconate cyclase compare
EX28DRAFT_4542 -1.8 -6.9 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_1651 -1.8 -4.1 monothiol glutaredoxin, Grx4 family compare
EX28DRAFT_2288 -1.8 -1.7 negative regulator of replication initiation SeqA compare
EX28DRAFT_3901 -1.8 -5.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_0074 -1.8 -6.9 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_2999 -1.8 -2.8 Fe-S cluster protector protein compare
EX28DRAFT_3267 -1.7 -7.0 Leucyl aminopeptidase compare
EX28DRAFT_2852 -1.7 -5.5 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_4420 -1.7 -0.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2250 -1.7 -1.9 peptidoglycan-associated lipoprotein compare
EX28DRAFT_1685 -1.7 -5.1 FeS assembly ATPase SufC compare
EX28DRAFT_4066 -1.7 -5.3 Universal stress protein B (UspB) compare
EX28DRAFT_1650 -1.7 -1.9 ribonuclease T compare
EX28DRAFT_2848 -1.7 -6.6 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2520 -1.7 -9.1 ABC-type multidrug transport system, ATPase and permease components compare
EX28DRAFT_3647 -1.7 -4.2 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2299 -1.7 -7.3 Transcriptional regulator/sugar kinase compare
EX28DRAFT_3320 -1.7 -0.7 hypothetical protein compare
EX28DRAFT_2548 -1.7 -1.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2008 -1.7 -3.8 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0069 -1.6 -1.7 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0116 -1.6 -2.0 FeS assembly protein IscX compare
EX28DRAFT_3898 -1.6 -1.4 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_3185 -1.6 -2.2 transcriptional regulator, DeoR family compare
EX28DRAFT_0529 -1.6 -3.3 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_1626 -1.6 -2.1 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_1827 -1.6 -5.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
EX28DRAFT_3058 -1.6 -2.4 Signal transduction histidine kinase compare
EX28DRAFT_3613 -1.6 -2.2 RNA compare
EX28DRAFT_3314 -1.5 -0.9 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2585 -1.5 -1.1 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2217 -1.5 -5.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
EX28DRAFT_4121 -1.5 -2.0 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2331 -1.5 -6.9 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_0875 -1.5 -8.5 cardiolipin synthase compare
EX28DRAFT_2946 -1.5 -2.6 flavodoxin, long chain compare
EX28DRAFT_0068 -1.4 -1.3 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_1624 -1.4 -2.9 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_1658 -1.4 -5.7 Cyclopropane fatty acid synthase and related methyltransferases compare
EX28DRAFT_2287 -1.4 -6.3 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_1941 -1.4 -1.2 Protein of unknown function (DUF4089) compare
EX28DRAFT_1363 -1.4 -4.3 Domain of unknown function (DUF1852) compare
EX28DRAFT_3671 -1.4 -1.8 RNA compare
EX28DRAFT_0180 -1.4 -3.3 Peroxiredoxin compare
EX28DRAFT_2213 -1.4 -2.0 dethiobiotin synthase compare
EX28DRAFT_0291 -1.4 -1.9 Uncharacterized membrane protein, required for colicin V production compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium m-arsenite across organisms