Experiment set1IT044 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 4 ug/mL

200 most important genes:

  gene name fitness t score description  
CCNA_03577 -4.1 -2.6 DNA polymerase I compare
CCNA_01496 -3.7 -2.0 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_03337 -3.6 -3.5 peptidoglycan-associated lipoprotein pal compare
CCNA_01556 -3.3 -2.3 LacI-family transcriptional regulator compare
CCNA_00239 -3.2 -1.7 serine kinase/phosphatase HprK compare
CCNA_01275 -3.2 -2.2 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_01211 -3.0 -6.0 MobA-like NTP transferase domain protein compare
CCNA_01214 -3.0 -4.8 YjgP/YjgQ family membrane permease compare
CCNA_00349 -2.9 -2.6 integrase/recombinase, XerC-CodV family compare
CCNA_03786 -2.9 -4.0 heme chaperone heme-lyase compare
CCNA_02217 -2.9 -3.0 hypothetical protein compare
CCNA_02645 -2.9 -2.7 S-adenosyl-methyltransferase MraW compare
CCNA_03650 -2.9 -2.0 mannose-1-phosphate guanyltransferase compare
CCNA_01218 -2.8 -10.1 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_01538 -2.7 -1.9 pyruvate phosphate dikinase compare
CCNA_03072 -2.7 -2.3 TetR-family transcriptional regulator compare
CCNA_01676 -2.7 -1.8 hypothetical protein compare
CCNA_03336 -2.7 -6.8 Tol system periplasmic component YbgF compare
CCNA_03683 -2.6 -2.5 maleylpyruvate isomerase compare
CCNA_03783 -2.6 -1.9 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_01222 -2.6 -8.8 NADH-ubiquinone oxidoreductase compare
CCNA_01224 -2.5 -10.1 O-antigen membrane transport protein compare
CCNA_02922 -2.5 -2.7 hypothetical protein compare
CCNA_02094 -2.5 -3.4 MviM-like NAD-dependent oxidoreductase compare
CCNA_01223 -2.5 -13.9 acyl-CoA synthetase compare
CCNA_03755 -2.5 -7.1 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_00708 -2.4 -2.8 cobaltochelatase cobT subunit compare
CCNA_01220 -2.4 -10.3 7-keto-8-aminopelargonate synthetase compare
CCNA_02650 -2.4 -4.3 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_00240 -2.4 -2.3 PTS system, IIA component compare
CCNA_03859 -2.4 -3.2 two-component response regulator cenR compare
CCNA_01988 -2.3 -2.2 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_01217 -2.3 -13.8 phosphatidylglycerophosphate synthase compare
CCNA_02962 -2.3 -1.3 HicB-family RNAse H fold protein compare
CCNA_01118 -2.2 -1.8 hypothetical protein compare
CCNA_01212 -2.2 -11.5 dATP pyrophosphohydrolase compare
CCNA_03736 -2.2 -1.4 YGGT family membrane protein compare
CCNA_01221 -2.1 -4.3 acyl carrier protein compare
CCNA_01213 -2.1 -3.6 YjgP/YjgQ family membrane permease compare
CCNA_00976 -2.0 -2.7 signal peptide peptidase A compare
CCNA_03835 -2.0 -3.0 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_02329 -2.0 -1.9 exodeoxyribonuclease VII large subunit compare
CCNA_01784 -2.0 -2.7 hypothetical protein compare
CCNA_02062 -2.0 -4.6 DNA repair protein recN compare
CCNA_02387 -2.0 -1.5 glutathione reductase compare
CCNA_02064 -1.9 -2.4 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase compare
CCNA_01896 -1.9 -1.0 hypothetical protein compare
CCNA_00304 -1.9 -3.1 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_02085 -1.9 -4.6 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_01971 -1.9 -2.6 peptidyl-prolyl cis-trans isomerase compare
CCNA_03897 -1.9 -2.7 hypothetical protein compare
CCNA_03052 -1.8 -4.7 acyltransferase compare
CCNA_03878 -1.8 -2.8 ferrochelatase compare
CCNA_03516 -1.8 -3.1 protoheme IX farnesyltransferase coxE compare
CCNA_01279 -1.8 -1.5 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_00134 -1.8 -6.6 surface protein compare
CCNA_01795 -1.8 -3.3 phosphopyruvate hydratase compare
CCNA_03548 -1.7 -6.7 carboxy-terminal processing protease precursor compare
CCNA_00306 -1.7 -5.6 lysophospholipid acyltransferase compare
CCNA_01061 -1.7 -3.5 type I secretion adaptor protein RsaE compare
CCNA_01210 -1.7 -8.0 nucleotidyltransferase family protein compare
CCNA_03277 -1.7 -5.1 glycosyltransferase compare
CCNA_00292 -1.7 -3.8 phosphate transport system permease protein pstC compare
CCNA_00135 -1.7 -4.9 trypsin-like peptidase compare
CCNA_02344 -1.6 -1.9 phosphoglycerate mutase compare
CCNA_01103 -1.6 -5.1 ADP-heptose--LPS heptosyltransferase compare
CCNA_01130 -1.6 -4.0 flagellar biosynthesis protein FliR compare
CCNA_01219 -1.6 -6.4 putative cytosolic protein compare
CCNA_01226 -1.6 -7.4 hypothetical protein compare
CCNA_03732 -1.5 -3.4 N-acyl-D-glucosamine 2-epimerase compare
CCNA_03790 -1.5 -2.9 hypothetical protein compare
CCNA_03135 -1.5 -4.0 flagellum-specific ATP synthase fliL compare
CCNA_02320 -1.4 -5.0 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_00502 -1.4 -4.8 glycosyl transferase family protein compare
CCNA_00956 -1.4 -5.7 flagellar biosynthesis protein FlhA compare
CCNA_03329 -1.4 -1.5 hypothetical protein compare
CCNA_03782 -1.4 -1.8 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_03651 -1.4 -3.6 ATP-dependent nuclease subunit B compare
CCNA_00896 -1.3 -1.5 hypothetical protein compare
CCNA_01968 -1.3 -1.2 pentapeptide repeats containing protein compare
CCNA_03872 -1.3 -4.8 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_00952 -1.3 -3.9 flagellar assembly protein FlbE/FliH compare
CCNA_03916 -1.3 -1.8 hypothetical protein compare
CCNA_02942 -1.3 -4.1 nucleoside-diphosphate-sugar epimerase compare
CCNA_02075 -1.3 -5.4 peptidoglycan binding endopeptidase DipM compare
CCNA_00953 -1.3 -1.8 flagellar motor switch protein FliN compare
CCNA_03114 -1.3 -2.4 hypothetical protein compare
CCNA_02572 -1.2 -4.3 adenylosuccinate lyase compare
CCNA_00128 -1.2 -1.8 argininosuccinate synthase compare
CCNA_03787 -1.2 -1.4 heme exporter protein D CcmD compare
CCNA_02251 -1.2 -3.4 methylglutaconyl-CoA hydratase compare
CCNA_00011 -1.2 -4.0 chaperone protein DnaJ compare
CCNA_01002 -1.2 -2.4 flagellar biosyntheis protein FliP compare
CCNA_00293 -1.2 -1.6 phosphate transport system permease protein pstA compare
CCNA_03136 -1.1 -2.7 flagellar export protein FliJ compare
CCNA_01732 -1.1 -1.8 DNA repair protein RadA compare
CCNA_02848 -1.1 -2.4 heme chaperone-apocytochrome heme-lyase compare
CCNA_03201 -1.1 -7.4 adenylosuccinate synthetase compare
CCNA_01910 -1.1 -4.1 ABC transporter substrate-binding protein compare
CCNA_01845 -1.1 -2.9 two-component response regulator protein compare
CCNA_00296 -1.1 -4.3 phosphate regulon response regulator PhoB compare
CCNA_01003 -1.1 -3.4 flagellar biosynthesis protein FliO compare
CCNA_00893 -1.1 -1.5 helix-turn-helix DNA-binding protein compare
CCNA_03913 -1.0 -2.7 hypothetical protein compare
CCNA_02892 -1.0 -1.0 hypothetical protein compare
CCNA_00252 -1.0 -5.0 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_03013 -1.0 -4.5 alkyl hydroperoxide reductase subunit F compare
CCNA_01805 -1.0 -1.2 dihydrolipoamide dehydrogenase compare
CCNA_01638 -1.0 -5.0 beta-lactamase family protein compare
CCNA_02552 -1.0 -1.8 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_00294 -1.0 -1.1 phosphate transport ATP-binding protein pstB compare
CCNA_01407 -1.0 -2.1 hypothetical protein compare
CCNA_01692 -1.0 -1.6 GMP synthase GuaA compare
CCNA_01131 -1.0 -3.2 flagellar biosynthesis protein FlhB compare
CCNA_00379 -0.9 -1.1 thiol:disulfide interchange protein dsbA compare
CCNA_01817 -0.9 -2.5 nitrogen assimilation regulatory protein ntrX compare
CCNA_02468 -0.9 -3.6 hypothetical protein compare
CCNA_02788 -0.9 -2.4 Xre-family transcriptional regulator compare
CCNA_03766 -0.9 -1.9 16S rRNA processing protein RimM compare
CCNA_01475 -0.9 -3.2 OmpW family outer membrane cation channel compare
CCNA_00950 -0.9 -3.7 flagellar M-ring protein FliF compare
CCNA_03652 -0.9 -2.7 ATP-dependent nuclease subunit A compare
CCNA_02934 -0.9 -4.1 hypothetical protein compare
CCNA_03101 -0.9 -1.8 site-specific tyrosine recombinase XerD compare
CCNA_01474 -0.9 -3.0 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_03273 -0.9 -5.0 hypothetical protein compare
CCNA_01469 -0.8 -2.9 cytochrome cbb3 oxidase, subunit ccoQ compare
CCNA_01242 -0.8 -4.5 amino acid permease compare
CCNA_02278 -0.8 -0.6 hypothetical protein compare
CCNA_02390 -0.8 -2.0 phosphoglycolate phosphatase compare
CCNA_01675 -0.8 -1.1 outer membrane protein compare
CCNA_03609 -0.8 -4.3 outer membrane protein compare
CCNA_01726 -0.8 -0.9 EngA-subfamily GTPase protein compare
CCNA_02847 -0.8 -2.4 cytochrome c-type biogenesis protein ccmH compare
CCNA_03354 -0.8 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_02488 -0.8 -3.3 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_01939 -0.8 -1.6 ADP-ribosylglycohydrolase compare
CCNA_00512 -0.8 -3.3 GTP-binding protein, probable translation factor compare
CCNA_R0047 -0.8 -1.3 tRNA-Val compare
CCNA_00670 -0.8 -2.1 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare
CCNA_00315 -0.8 -2.1 3-polyprenyl-4-hydroxybenzoate decarboxylase compare
CCNA_00257 -0.8 -4.0 adenosylhomocysteinase compare
CCNA_01955 -0.8 -4.1 zinc metalloprotease compare
CCNA_01785 -0.8 -2.7 hypothetical protein compare
CCNA_03702 -0.8 -1.2 SSU ribosomal protein S1P compare
CCNA_03547 -0.8 -2.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01467 -0.8 -5.3 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_01876 -0.8 -4.7 oxidoreductase compare
CCNA_00197 -0.8 -1.3 LSU ribosomal protein L19P compare
CCNA_00057 -0.8 -0.7 glycoprotease family protein compare
CCNA_01123 -0.8 -4.4 peptide chain release factor RF-3 compare
CCNA_03871 -0.8 -1.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_00628 -0.8 -3.3 chemotaxis protein cheY compare
CCNA_01477 -0.7 -4.3 oxygen-independent coproporphyrinogen-III oxidase hemN compare
CCNA_02252 -0.7 -3.6 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01883 -0.7 -3.7 acyl-CoA dehydrogenase compare
CCNA_01873 -0.7 -1.4 magnesium and cobalt transport protein corA compare
CCNA_00588 -0.7 -1.6 SapA domain protein compare
CCNA_R0010 -0.7 -2.3 tRNA-Arg compare
CCNA_01461 -0.7 -3.0 hypothetical protein compare
CCNA_02449 -0.7 -2.8 hypothetical protein compare
CCNA_01367 -0.7 -2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_03542 -0.7 -2.5 hypothetical protein compare
CCNA_02490 -0.7 -1.3 3-ketoacyl-CoA thiolase compare
CCNA_02232 -0.7 -5.1 TonB-dependent receptor compare
CCNA_00768 -0.7 -1.0 hypothetical protein compare
CCNA_03788 -0.7 -1.7 thiol:disulfide interchange protein tlpA compare
CCNA_00684 -0.7 -1.3 anti-sigma factor, ChrR-family compare
CCNA_00375 -0.7 -2.9 hypothetical protein compare
CCNA_00920 -0.7 -0.8 hypothetical protein compare
CCNA_02289 -0.7 -1.3 MarR/EmrR family transcriptional regulator compare
CCNA_02478 -0.7 -3.8 dihydrolipoamide acetyltransferase component of acetoin cleaving system compare
CCNA_03185 -0.7 -2.1 glutathione S-transferase compare
CCNA_03931 -0.6 -0.4 hypothetical protein compare
CCNA_01802 -0.6 -0.4 hypothetical protein compare
CCNA_03942 -0.6 -1.6 hypothetical protein compare
CCNA_01497 -0.6 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_01047 -0.6 -5.2 TonB-dependent receptor compare
CCNA_01489 -0.6 -3.9 alpha-L-arabinofuranosidase compare
CCNA_00143 -0.6 -3.3 ribosomal RNA small subunit methyltransferase I compare
CCNA_00036 -0.6 -0.9 ribosome-binding factor A compare
CCNA_01893 -0.6 -2.1 SnoaL-like domain protein compare
CCNA_00667 -0.6 -2.4 lipopolysaccharide biosynthesis protein compare
CCNA_03827 -0.6 -1.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase compare
CCNA_03861 -0.6 -1.6 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_00761 -0.6 -0.4 hypothetical protein compare
CCNA_00747 -0.6 -2.5 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_R0075 -0.6 -1.0 tRNA-Met compare
CCNA_03882 -0.6 -0.7 phage gp6-like head-tail connector protein compare
CCNA_03927 -0.6 -0.4 hypothetical protein compare
CCNA_02481 -0.6 -4.6 TonB-dependent receptor compare
CCNA_01909 -0.6 -3.7 ABC transporter substrate-binding protein compare
CCNA_02631 -0.6 -1.6 P-loop NTPase-related protein compare
CCNA_01889 -0.6 -3.5 long-chain-fatty-acid--CoA ligase compare
CCNA_00641 -0.6 -2.2 hypothetical protein compare
CCNA_01837 -0.6 -2.6 transposase, IS30 family compare
CCNA_00607 -0.6 -4.8 TonB-dependent receptor compare
CCNA_01907 -0.6 -2.8 ABC transporter ATP-binding protein compare
CCNA_01797 -0.6 -1.0 FtsB-related septum formation initiator compare
CCNA_00951 -0.6 -1.5 flagellar motor switch protein FliG compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms