Experiment set1IT043 for Variovorax sp. OAS795

Compare to:

D-Serine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16065 -4.3 -2.7 PDR/VanB family oxidoreductase compare
ABID97_RS22625 -4.2 -10.1 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23225 -3.5 -18.4 glutamate synthase-related protein compare
ABID97_RS09180 -3.5 -4.7 DNA polymerase I compare
ABID97_RS13860 -3.5 -5.7 hypothetical protein compare
ABID97_RS23220 -3.4 -1.6 glutamate synthase subunit beta compare
ABID97_RS08220 -3.4 -14.0 phosphoenolpyruvate carboxylase compare
ABID97_RS01565 -3.4 -12.3 DNA starvation/stationary phase protection protein compare
ABID97_RS05250 -3.3 -9.4 anthranilate synthase component I compare
ABID97_RS05260 -3.2 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS22620 -3.2 -6.9 response regulator transcription factor compare
ABID97_RS02455 -2.7 -4.9 nucleotidyltransferase family protein compare
ABID97_RS17270 -2.6 -8.9 ATP-binding protein compare
ABID97_RS27720 -2.5 -2.3 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS21150 -2.4 -8.8 FAD-dependent oxidoreductase compare
ABID97_RS17850 -2.4 -1.1 tetratricopeptide repeat protein compare
ABID97_RS15665 -2.3 -8.0 [protein-PII] uridylyltransferase compare
ABID97_RS25015 -2.3 -4.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS08435 -2.2 -2.1 phosphoribosylanthranilate isomerase compare
ABID97_RS12180 -2.2 -2.5 hypothetical protein compare
ABID97_RS20940 -2.2 -1.7 CBS domain-containing protein compare
ABID97_RS13990 -2.2 -5.3 amino acid aminotransferase compare
ABID97_RS08775 -2.1 -2.4 ribosome small subunit-dependent GTPase A compare
ABID97_RS17265 -2.1 -4.0 two-component system response regulator OmpR compare
ABID97_RS05755 -2.1 -3.1 glycosyltransferase compare
ABID97_RS17590 -2.0 -8.7 endopeptidase La compare
ABID97_RS06575 -2.0 -4.6 trehalose-phosphatase compare
ABID97_RS08480 -2.0 -1.4 citrate synthase compare
ABID97_RS16595 -2.0 -4.4 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS05280 -1.9 -1.8 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03800 -1.9 -2.9 O-antigen ligase family protein compare
ABID97_RS05275 -1.9 -1.4 anthranilate phosphoribosyltransferase compare
ABID97_RS02600 -1.9 -5.9 homoserine O-acetyltransferase compare
ABID97_RS23425 -1.9 -1.9 tRNA-Pro compare
ABID97_RS24170 -1.8 -4.5 ATP-binding protein compare
ABID97_RS07405 -1.8 -10.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS14625 -1.8 -6.0 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS23230 -1.8 -9.4 transposase compare
ABID97_RS11325 -1.7 -2.0 ATP-binding cassette domain-containing protein compare
ABID97_RS09595 -1.7 -3.2 Arc family DNA-binding protein compare
ABID97_RS23440 -1.7 -10.1 A24 family peptidase compare
ABID97_RS02110 -1.7 -12.1 type IV pilus modification protein PilV compare
ABID97_RS13865 -1.7 -4.7 hypothetical protein compare
ABID97_RS19065 -1.7 -4.1 GntR family transcriptional regulator compare
ABID97_RS04500 -1.7 -1.9 HPr(Ser) kinase/phosphatase compare
ABID97_RS05750 -1.7 -2.6 glycosyltransferase compare
ABID97_RS00255 -1.7 -9.7 type IV pilus twitching motility protein PilT compare
ABID97_RS27795 -1.7 -1.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS15130 -1.6 -1.4 contractile injection system protein, VgrG/Pvc8 family compare
ABID97_RS02420 -1.6 -4.6 protealysin inhibitor emfourin compare
ABID97_RS04960 -1.6 -1.0 ATP-binding protein compare
ABID97_RS28460 -1.6 -1.1 DUF1656 domain-containing protein compare
ABID97_RS16535 -1.6 -6.1 arginine/lysine/ornithine decarboxylase compare
ABID97_RS23915 -1.6 -3.6 heme o synthase compare
ABID97_RS06415 -1.6 -8.1 sigma-54 dependent transcriptional regulator compare
ABID97_RS13325 -1.5 -1.3 antibiotic biosynthesis monooxygenase compare
ABID97_RS02145 -1.5 -5.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS02125 -1.5 -11.9 PilC/PilY family type IV pilus protein compare
ABID97_RS02115 -1.5 -7.2 PilW family protein compare
ABID97_RS22860 -1.5 -2.1 MurR/RpiR family transcriptional regulator compare
ABID97_RS05670 -1.5 -1.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS03380 -1.5 -2.6 threonine ammonia-lyase compare
ABID97_RS19595 -1.5 -1.6 TRAP transporter small permease compare
ABID97_RS13155 -1.4 -2.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS19660 -1.4 -2.5 hypothetical protein compare
ABID97_RS10695 -1.4 -5.6 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS25525 -1.4 -2.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS10705 -1.4 -5.1 H-NS histone family protein compare
ABID97_RS23455 -1.4 -3.4 hypothetical protein compare
ABID97_RS23430 -1.4 -7.7 type IV-A pilus assembly ATPase PilB compare
ABID97_RS09935 -1.4 -4.6 hypothetical protein compare
ABID97_RS20020 -1.3 -2.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS16470 -1.3 -1.7 translational GTPase TypA compare
ABID97_RS11545 -1.3 -1.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS09800 -1.3 -0.9 hypothetical protein compare
ABID97_RS08425 -1.3 -3.6 tryptophan synthase subunit alpha compare
ABID97_RS05765 -1.3 -3.0 UDP-glucose 4-epimerase GalE compare
ABID97_RS01840 -1.3 -7.8 DUF1631 family protein compare
ABID97_RS02120 -1.3 -6.7 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS13750 -1.3 -1.0 hypothetical protein compare
ABID97_RS15995 -1.3 -4.5 PilZ domain-containing protein compare
ABID97_RS03125 -1.2 -5.9 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS11495 -1.2 -1.4 indoleacetamide hydrolase compare
ABID97_RS10685 -1.2 -5.4 hypothetical protein compare
ABID97_RS14160 -1.2 -4.0 cell division protein ZapE compare
ABID97_RS04480 -1.2 -2.0 magnesium/cobalt transporter CorA compare
ABID97_RS02130 -1.2 -7.0 type IV pilin protein compare
ABID97_RS22705 -1.2 -5.5 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS03915 -1.2 -4.2 DUF4124 domain-containing protein compare
ABID97_RS28980 -1.2 -3.0 RNA methyltransferase compare
ABID97_RS24705 -1.2 -5.4 response regulator compare
ABID97_RS08445 -1.2 -6.3 FimV/HubP family polar landmark protein compare
ABID97_RS26760 -1.2 -2.8 urea ABC transporter permease subunit UrtC compare
ABID97_RS23435 -1.2 -7.8 type II secretion system F family protein compare
ABID97_RS27370 -1.2 -1.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS24920 -1.2 -0.8 Holliday junction branch migration protein RuvA compare
ABID97_RS11865 -1.2 -2.5 beta-xylosidase compare
ABID97_RS28635 -1.2 -4.5 IclR family transcriptional regulator compare
ABID97_RS18580 -1.2 -1.4 CoA transferase compare
ABID97_RS24025 -1.2 -1.2 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS10710 -1.2 -6.4 NADPH:quinone oxidoreductase family protein compare
ABID97_RS08430 -1.2 -1.5 tryptophan synthase subunit beta compare
ABID97_RS14850 -1.1 -3.5 P-II family nitrogen regulator compare
ABID97_RS22135 -1.1 -0.9 LysR family transcriptional regulator compare
ABID97_RS01825 -1.1 -7.7 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS20405 -1.1 -2.8 MarR family transcriptional regulator compare
ABID97_RS10105 -1.1 -3.1 CBS domain-containing protein compare
ABID97_RS27140 -1.1 -1.3 winged helix-turn-helix domain-containing protein compare
ABID97_RS04760 -1.1 -1.3 SPOR domain-containing protein compare
ABID97_RS26030 -1.1 -0.9 DUF1330 domain-containing protein compare
ABID97_RS02135 -1.1 -5.1 GspH/FimT family pseudopilin compare
ABID97_RS03110 -1.1 -5.2 helix-turn-helix transcriptional regulator compare
ABID97_RS26825 -1.1 -2.4 ankyrin repeat domain-containing protein compare
ABID97_RS24690 -1.1 -4.8 methyl-accepting chemotaxis protein compare
ABID97_RS08710 -1.1 -3.8 polynucleotide adenylyltransferase PcnB compare
ABID97_RS24045 -1.1 -2.2 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS23940 -1.1 -4.5 cytochrome c oxidase subunit 3 compare
ABID97_RS13245 -1.1 -0.9 XRE family transcriptional regulator compare
ABID97_RS17970 -1.1 -5.6 protein TolQ compare
ABID97_RS10815 -1.1 -7.8 phosphoenolpyruvate synthase compare
ABID97_RS00585 -1.1 -7.1 TlpA disulfide reductase family protein compare
ABID97_RS23270 -1.1 -5.5 pilus assembly protein PilP compare
ABID97_RS16695 -1.1 -6.7 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS23920 -1.1 -5.5 COX15/CtaA family protein compare
ABID97_RS14975 -1.1 -2.2 hypothetical protein compare
ABID97_RS19930 -1.0 -1.1 DUF2160 domain-containing protein compare
ABID97_RS27015 -1.0 -1.1 DoxX family protein compare
ABID97_RS16910 -1.0 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS26245 -1.0 -2.1 alpha/beta hydrolase compare
ABID97_RS20615 -1.0 -4.5 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS06600 -1.0 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS13980 -1.0 -0.7 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS13170 -1.0 -1.7 ABC transporter ATP-binding protein compare
ABID97_RS12140 -1.0 -4.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS13570 -1.0 -2.5 IclR family transcriptional regulator compare
ABID97_RS02460 -1.0 -6.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS03680 -1.0 -3.8 lysophospholipid transporter LplT compare
ABID97_RS26670 -1.0 -1.7 DUF1801 domain-containing protein compare
ABID97_RS10060 -1.0 -6.1 FAD-binding oxidoreductase compare
ABID97_RS15855 -1.0 -1.0 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABID97_RS06460 -1.0 -1.4 sigma 54-interacting transcriptional regulator compare
ABID97_RS20630 -1.0 -2.5 ABC transporter permease compare
ABID97_RS23650 -1.0 -7.1 serine/threonine-protein kinase compare
ABID97_RS09430 -0.9 -1.1 monovalent cation/H(+) antiporter subunit G compare
ABID97_RS17050 -0.9 -1.2 RlmE family RNA methyltransferase compare
ABID97_RS02200 -0.9 -7.7 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS02140 -0.9 -3.2 sugar transferase compare
ABID97_RS13195 -0.9 -0.8 maleylacetate reductase compare
ABID97_RS28125 -0.9 -2.4 Crp/Fnr family transcriptional regulator compare
ABID97_RS12725 -0.9 -2.6 pyrroloquinoline-quinone synthase PqqC compare
ABID97_RS07855 -0.9 -2.2 ABC transporter ATP-binding protein compare
ABID97_RS27625 -0.9 -0.8 NAD(P)-binding domain-containing protein compare
ABID97_RS06190 -0.9 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS23790 -0.9 -2.6 ATP-binding cassette domain-containing protein compare
ABID97_RS04935 -0.9 -3.9 catalase HPII compare
ABID97_RS29135 -0.9 -1.4 acyl-CoA dehydrogenase family protein compare
ABID97_RS22765 -0.9 -1.5 phenylacetic acid degradation protein PaaY compare
ABID97_RS27450 -0.9 -0.7 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS28830 -0.9 -2.2 GntR family transcriptional regulator compare
ABID97_RS06175 -0.9 -6.9 STAS domain-containing protein compare
ABID97_RS23785 -0.9 -3.5 ABC transporter ATP-binding protein compare
ABID97_RS04245 -0.9 -1.5 acyl-CoA thioesterase compare
ABID97_RS23775 -0.9 -3.5 ABC transporter permease compare
ABID97_RS17200 -0.9 -6.1 ribonuclease R compare
ABID97_RS21945 -0.9 -3.1 hemolysin family protein compare
ABID97_RS23965 -0.9 -4.7 cytochrome c oxidase subunit II compare
ABID97_RS07355 -0.9 -4.7 CHASE3 domain-containing protein compare
ABID97_RS23950 -0.9 -4.7 cytochrome c oxidase assembly protein compare
ABID97_RS25130 -0.9 -4.9 carboxyl transferase domain-containing protein compare
ABID97_RS19225 -0.9 -3.1 translesion DNA synthesis-associated protein ImuA compare
ABID97_RS26500 -0.8 -2.0 saccharopine dehydrogenase C-terminal domain-containing protein compare
ABID97_RS05055 -0.8 -1.1 tetratricopeptide repeat protein compare
ABID97_RS15190 -0.8 -1.5 phage baseplate assembly protein V compare
ABID97_RS11380 -0.8 -1.7 acetyl-CoA C-acyltransferase compare
ABID97_RS11740 -0.8 -1.2 JAB domain-containing protein compare
ABID97_RS17595 -0.8 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS10355 -0.8 -4.4 FadR/GntR family transcriptional regulator compare
ABID97_RS26845 -0.8 -1.2 carotenoid oxygenase family protein compare
ABID97_RS19630 -0.8 -0.6 TRAP transporter small permease compare
ABID97_RS06275 -0.8 -0.9 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS22565 -0.8 -2.7 urea ABC transporter substrate-binding protein compare
ABID97_RS28320 -0.8 -1.0 FAD binding domain-containing protein compare
ABID97_RS25845 -0.8 -1.0 sugar ABC transporter permease compare
ABID97_RS16290 -0.8 -4.4 protein-glutamate O-methyltransferase CheR compare
ABID97_RS22875 -0.8 -0.8 ABC transporter ATP-binding protein compare
ABID97_RS01650 -0.8 -0.9 orotidine-5'-phosphate decarboxylase compare
ABID97_RS23275 -0.8 -3.6 type 4a pilus biogenesis protein PilO compare
ABID97_RS26465 -0.8 -0.9 cytochrome c oxidase subunit II compare
ABID97_RS08195 -0.8 -2.3 histidine kinase compare
ABID97_RS06160 -0.8 -4.0 GTP-binding protein compare
ABID97_RS12325 -0.8 -2.5 VOC family protein compare
ABID97_RS01755 -0.8 -3.6 pyruvate kinase compare
ABID97_RS29485 -0.8 -1.4 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS08830 -0.8 -1.0 indolepyruvate oxidoreductase subunit beta family protein compare
ABID97_RS18080 -0.8 -1.0 alpha/beta hydrolase compare
ABID97_RS19040 -0.8 -0.9 isocitrate/isopropylmalate dehydrogenase family protein compare
ABID97_RS06345 -0.8 -2.0 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23285 -0.8 -4.7 pilus assembly protein PilM compare
ABID97_RS24675 -0.8 -1.9 YqgE/AlgH family protein compare
ABID97_RS15695 -0.8 -2.6 peptide-methionine (R)-S-oxide reductase MsrB compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in carbon source experiments

For carbon source D-Serine across organisms