Experiment set1IT043 for Pseudomonas sp. S08-1

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
OH686_15135 -5.6 -5.4 Anthranilate phosphoribosyltransferase compare
OH686_04475 -5.6 -6.6 3-isopropylmalate dehydratase small subunit compare
OH686_14580 -5.3 -12.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_00475 -5.0 -12.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_10005 -4.9 -27.9 Glutamate synthase [NADPH] large chain compare
OH686_02455 -4.9 -11.0 Glucose ABC transporter, ATP-binding subunit compare
OH686_14100 -4.9 -15.7 dihydroxy-acid dehydratase compare
OH686_09445 -4.9 -12.6 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_12425 -4.9 -12.5 tryptophan synthase, beta subunit compare
OH686_15125 -4.8 -20.8 anthranilate synthase component I compare
OH686_12430 -4.8 -11.6 tryptophan synthase, alpha subunit compare
OH686_02470 -4.8 -10.3 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) compare
OH686_02465 -4.8 -16.1 Glucose ABC transport system, inner membrane component 1 compare
OH686_02490 -4.7 -16.0 phosphogluconate dehydratase compare
OH686_04480 -4.7 -11.3 3-isopropylmalate dehydratase large subunit compare
OH686_02475 -4.7 -11.3 Integral membrane sensor signal transduction histidine kinase , glucose catabolism cluster compare
OH686_11120 -4.6 -12.3 amino-acid N-acetyltransferase compare
OH686_15195 -4.6 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_02425 -4.6 -15.1 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_04445 -4.6 -15.1 Phosphoribosylanthranilate isomerase compare
OH686_11285 -4.6 -20.0 D-2-hydroxyglutarate dehydrogenase compare
OH686_08130 -4.6 -18.9 acetolactate synthase, large subunit, biosynthetic type compare
OH686_11400 -4.5 -15.8 threonine ammonia-lyase, biosynthetic compare
OH686_15140 -4.5 -19.3 Indole-3-glycerol phosphate synthase compare
OH686_04470 -4.5 -18.2 3-isopropylmalate dehydrogenase compare
OH686_10000 -4.5 -19.2 Glutamate synthase [NADPH] small chain compare
OH686_08125 -4.5 -14.0 acetolactate synthase, small subunit compare
OH686_11000 -4.4 -17.7 homoserine O-acetyltransferase compare
OH686_11005 -4.4 -13.1 methionine biosynthesis protein MetW compare
OH686_08115 -4.4 -9.0 ketol-acid reductoisomerase compare
OH686_10020 -4.4 -6.7 Shikimate kinase I compare
OH686_03470 -4.4 -14.0 Sulfite reductase [NADPH] hemoprotein beta-component compare
OH686_08465 -4.4 -18.9 histidinol-phosphate transaminase compare
OH686_00660 -4.3 -8.3 Isochorismatase compare
OH686_02435 -4.3 -18.5 glucose-6-phosphate dehydrogenase compare
OH686_23180 -4.3 -3.5 hypothetical protein compare
OH686_14575 -4.3 -8.1 Imidazoleglycerol-phosphate dehydratase compare
OH686_08525 -4.3 -4.2 LPS export ABC transporter periplasmic protein LptC compare
OH686_02460 -4.3 -11.7 Glucose ABC transport system, inner membrane component 2 compare
OH686_12485 -4.3 -3.0 Shikimate 5-dehydrogenase I alpha compare
OH686_13600 -4.3 -15.2 N-acetylglutamate kinase compare
OH686_11700 -4.3 -8.1 Glutaryl-CoA dehydrogenase compare
OH686_13545 -4.2 -13.3 RidA/YER057c/UK114 superfamily protein compare
OH686_14590 -4.2 -14.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_13885 -4.2 -13.3 argininosuccinate lyase compare
OH686_11705 -4.2 -16.1 Uncharacterized protein compare
OH686_14595 -4.2 -7.5 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_08470 -4.2 -18.6 Histidinol dehydrogenase compare
OH686_17405 -4.2 -2.9 Predicted transmembrane protein compare
OH686_08475 -4.1 -15.2 ATP phosphoribosyltransferase compare
OH686_02485 -4.1 -11.4 glucokinase compare
OH686_02415 -4.1 -15.1 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
OH686_10820 -4.1 -15.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_03930 -4.0 -15.2 argininosuccinate synthase compare
OH686_02480 -4.0 -7.0 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
OH686_04415 -4.0 -14.7 O-succinylhomoserine sulfhydrylase compare
OH686_11420 -3.9 -12.6 Phosphoserine phosphatase compare
OH686_21370 -3.9 -6.5 tRNA-Arg compare
OH686_00285 -3.9 -12.9 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase compare
OH686_16305 -3.9 -6.9 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_21095 -3.8 -3.7 maleylacetoacetate isomerase compare
OH686_10980 -3.8 -3.6 pyrroline-5-carboxylate reductase compare
OH686_13815 -3.7 -3.4 iron donor protein CyaY compare
OH686_13590 -3.6 -2.5 Orotate phosphoribosyltransferase compare
OH686_02430 -3.6 -2.9 6-phosphogluconolactonase , eukaryotic type compare
OH686_21970 -3.6 -4.9 L,D-transpeptidase compare
OH686_07585 -3.5 -6.3 3-dehydroquinate dehydratase, type II compare
OH686_02735 -3.5 -4.8 Flagellar synthesis regulator FleN compare
OH686_09190 -3.5 -13.9 Thiamin-phosphate pyrophosphorylase compare
OH686_10165 -3.5 -7.0 Phosphoribosyl-ATP pyrophosphatase compare
OH686_13190 -3.5 -5.9 Predicted regulator PutR for proline utilization, GntR family compare
OH686_17260 -3.5 -6.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
OH686_09340 -3.5 -7.4 Gamma-glutamyl phosphate reductase compare
OH686_20870 -3.5 -4.1 Chorismate mutase I / Prephenate dehydratase compare
OH686_17715 -3.4 -5.7 Inner membrane protein YpjD compare
OH686_14280 -3.4 -11.8 thiamine biosynthesis protein ThiS compare
OH686_20405 -3.4 -9.7 ornithine carbamoyltransferase compare
OH686_00140 -3.4 -2.3 NADH-ubiquinone oxidoreductase chain E compare
OH686_09555 -3.3 -15.4 phosphoserine phosphatase SerB compare
OH686_20320 -3.3 -3.1 hypothetical protein compare
OH686_14025 -3.3 -5.0 Thiol-disulfide isomerase or thioredoxin compare
OH686_22870 -3.3 -2.2 integration host factor, alpha subunit compare
OH686_14285 -3.3 -16.4 Thiazole synthase compare
OH686_11275 -3.3 -6.6 Exopolyphosphatase compare
OH686_16520 -3.2 -15.5 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_13700 -3.2 -6.4 Putrescine utilization regulator compare
OH686_20910 -3.2 -2.2 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
OH686_22005 -3.1 -12.2 Soluble pyridine nucleotide transhydrogenase compare
OH686_13800 -3.1 -2.2 diaminopimelate decarboxylase compare
OH686_09625 -3.1 -5.6 hypothetical protein compare
OH686_00120 -3.1 -2.1 NADH-ubiquinone oxidoreductase chain I compare
OH686_13200 -3.1 -17.6 acetyl-CoA carboxylase, biotin carboxylase subunit compare
OH686_14435 -3.1 -20.6 Glycosyl transferase, group 1 family protein compare
OH686_01030 -3.1 -2.1 ABC-type siderophore export system, fused ATPase and permease components compare
OH686_17570 -3.1 -13.5 2-isopropylmalate synthase compare
OH686_01780 -3.0 -6.5 L,D-transpeptidase compare
OH686_13205 -3.0 -19.4 oxaloacetate decarboxylase alpha subunit compare
OH686_00115 -3.0 -2.1 NADH-ubiquinone oxidoreductase chain J compare
OH686_13425 -3.0 -10.0 phosphate ABC transporter, ATP-binding protein compare
OH686_07395 -3.0 -14.1 copper-translocating P-type ATPase compare
OH686_17100 -3.0 -2.1 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_15065 -2.9 -11.5 Nucleotidyl transferase putative compare
OH686_08560 -2.9 -10.1 RNase adapter protein RapZ compare
OH686_14535 -2.9 -12.0 DedA protein compare
OH686_00150 -2.9 -2.0 NADH-ubiquinone oxidoreductase chain B compare
OH686_00155 -2.9 -3.9 NADH ubiquinone oxidoreductase chain A compare
OH686_02215 -2.9 -2.0 Putative analog of CcoH, COG3198 compare
OH686_11060 -2.9 -6.4 phosphoenolpyruvate carboxykinase (ATP) compare
OH686_00135 -2.9 -3.4 NADH oxidoreductase (quinone), F subunit compare
OH686_00105 -2.9 -3.9 NADH-ubiquinone oxidoreductase chain L compare
OH686_18180 -2.9 -2.0 Murein hydrolase activator NlpD compare
OH686_00095 -2.8 -5.1 NADH-ubiquinone oxidoreductase chain N compare
OH686_09505 -2.8 -2.7 3'-to-5' oligoribonuclease (orn) compare
OH686_20840 -2.8 -11.4 phosphoglycolate phosphatase, bacterial compare
OH686_00130 -2.8 -4.3 NADH dehydrogenase (quinone), G subunit compare
OH686_20835 -2.8 -7.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
OH686_20895 -2.8 -4.2 integration host factor, beta subunit compare
OH686_00145 -2.8 -5.9 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D compare
OH686_04280 -2.8 -3.5 hypothetical protein compare
OH686_21295 -2.7 -4.9 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_21595 -2.7 -6.1 hypothetical protein compare
OH686_09710 -2.7 -2.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OH686_02195 -2.7 -1.9 cytochrome c oxidase, cbb3-type, subunit II compare
OH686_07900 -2.7 -9.5 Molybdopterin-synthase adenylyltransferase compare
OH686_01680 -2.7 -1.9 2-methylisocitrate dehydratase, Fe/S-dependent compare
OH686_10160 -2.7 -5.1 Phosphoribosyl-AMP cyclohydrolase compare
OH686_17765 -2.7 -1.8 threonine synthase compare
OH686_21550 -2.7 -2.5 Origin specific replication binding factor compare
OH686_21330 -2.7 -2.7 aspartate kinase, monofunctional class compare
OH686_13460 -2.6 -10.3 phosphate regulon sensor kinase PhoR compare
OH686_04425 -2.6 -3.8 Colicin V production protein compare
OH686_08505 -2.6 -1.8 Phospholipid ABC transporter permease protein MlaE compare
OH686_00100 -2.6 -4.6 NADH-ubiquinone oxidoreductase chain M compare
OH686_08495 -2.6 -1.8 Phospholipid ABC transporter shuttle protein MlaC compare
OH686_19190 -2.6 -12.7 quinolinate synthetase complex, A subunit compare
OH686_13415 -2.6 -13.4 Phosphate ABC transporter, permease protein PstC compare
OH686_16240 -2.6 -13.2 Energy-dependent translational throttle protein EttA compare
OH686_14390 -2.6 -15.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
OH686_08365 -2.6 -4.9 Uncharacterized protein YraP compare
OH686_08565 -2.5 -1.5 Phosphocarrier protein, nitrogen regulation associated compare
OH686_03475 -2.5 -5.2 Oxidoreductase putative compare
OH686_04585 -2.5 -10.9 Biosynthetic Aromatic amino acid aminotransferase alpha or Aromatic-amino-acid aminotransferase compare
OH686_07640 -2.5 -1.7 probable sensor/response regulator hybrid compare
OH686_04405 -2.5 -1.9 hypothetical protein compare
OH686_00125 -2.5 -1.7 NADH-ubiquinone oxidoreductase chain H compare
OH686_09475 -2.5 -3.8 tRNA dimethylallyltransferase compare
OH686_02995 -2.5 -2.9 flagellar biosynthesis anti-sigma factor FlgM compare
OH686_18990 -2.4 -2.3 phosphoribosylglycinamide formyltransferase compare
OH686_11110 -2.4 -4.3 glutamate--cysteine ligase compare
OH686_13550 -2.4 -2.3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II compare
OH686_13410 -2.4 -15.0 Phosphate ABC transporter, substrate-binding protein PstS compare
OH686_03640 -2.4 -2.3 ATP-dependent Clp protease, ATP-binding subunit ClpX compare
OH686_13430 -2.4 -7.1 phosphate transport system regulatory protein PhoU compare
OH686_21310 -2.4 -6.0 succinylarginine dihydrolase compare
OH686_02620 -2.4 -7.4 Cytochrome c heme lyase subunit CcmH compare
OH686_09185 -2.4 -8.7 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_10090 -2.4 -1.7 Cell division protein compare
OH686_07905 -2.3 -2.3 protein-(glutamine-N5) methyltransferase, release factor-specific compare
OH686_02190 -2.3 -3.8 cytochrome c oxidase, cbb3-type, subunit I compare
OH686_08155 -2.3 -8.2 hypothetical protein compare
OH686_02205 -2.3 -2.2 cytochrome c oxidase, cbb3-type, subunit III compare
OH686_12250 -2.3 -6.2 Zinc ABC transporter, permease protein ZnuB compare
OH686_18290 -2.3 -3.1 transcriptional regulator MvaT, P16 subunit compare
OH686_11225 -2.3 -10.1 5-formyltetrahydrofolate cyclo-ligase compare
OH686_08500 -2.3 -2.2 outer membrane lipid asymmetry maintenance protein MlaD compare
OH686_20435 -2.3 -2.1 monothiol glutaredoxin, Grx4 family compare
OH686_20060 -2.2 -2.2 HtrA protease/chaperone protein compare
OH686_21590 -2.2 -8.5 Phage protein compare
OH686_17760 -2.2 -2.1 Homoserine dehydrogenase compare
OH686_13320 -2.2 -6.7 LysR-family transcriptional regulator compare
OH686_21305 -2.2 -2.5 succinylglutamate-semialdehyde dehydrogenase compare
OH686_14385 -2.2 -14.2 UDP-N-acetylglucosamine 2-epimerase compare
OH686_00235 -2.2 -11.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OH686_05835 -2.1 -3.5 Transcriptional regulator, MarR family compare
OH686_17740 -2.1 -2.4 ribosomal protein L19 compare
OH686_11205 -2.1 -14.3 Xaa-Pro aminopeptidase compare
OH686_19765 -2.1 -3.7 cell division topological specificity factor MinE compare
OH686_22720 -2.1 -2.4 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
OH686_09560 -2.1 -2.4 HAMP domain protein compare
OH686_08460 -2.0 -12.5 Outer membrane stress sensor protease DegS compare
OH686_14645 -2.0 -8.3 Carboxyl-terminal protease compare
OH686_01690 -2.0 -10.1 methylisocitrate lyase compare
OH686_14145 -2.0 -2.5 Uncharacterized ferredoxin-like protein YfhL compare
OH686_09205 -2.0 -9.3 TPR repeat, SEL1 subfamily compare
OH686_08510 -2.0 -2.7 Phospholipid ABC transporter ATP-binding protein MlaF compare
OH686_22050 -2.0 -2.9 MotA/TolQ/ExbB proton channel family protein compare
OH686_12960 -2.0 -7.9 Uncharacterized iron-regulated membrane protein / Iron-uptake factor PiuB compare
OH686_04115 -2.0 -2.1 hypothetical protein compare
OH686_12075 -1.9 -2.3 Exodeoxyribonuclease V beta chain compare
OH686_08440 -1.9 -7.5 hypothetical protein compare
OH686_15040 -1.9 -8.0 ribosomal RNA small subunit methyltransferase A compare
OH686_21965 -1.9 -2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
OH686_02210 -1.9 -14.1 cytochrome c oxidase accessory protein CcoG compare
OH686_09935 -1.9 -6.9 membrane protein, exporter compare
OH686_18920 -1.9 -1.5 tRNA-Met compare
OH686_21585 -1.9 -5.9 hypothetical protein compare
OH686_17360 -1.9 -14.6 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) compare
OH686_16385 -1.9 -13.6 Glycine oxidase ThiO compare
OH686_13555 -1.8 -4.1 DNA-directed RNA polymerase, omega subunit compare
OH686_09620 -1.8 -8.6 Serine acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source D-Glucose across organisms