Experiment set1IT042 for Pseudomonas simiae WCS417

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01565 -6.4 -4.8 imidazole glycerol phosphate synthase compare
PS417_18585 -6.3 -6.1 3-isopropylmalate dehydrogenase compare
PS417_18595 -6.2 -6.7 3-isopropylmalate dehydratase compare
PS417_23805 -6.1 -5.9 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -5.9 -5.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_18600 -5.9 -5.2 isopropylmalate isomerase compare
PS417_02510 -5.5 -10.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25720 -5.5 -10.5 anthranilate synthase component II compare
PS417_01575 -5.4 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23545 -5.4 -5.2 gamma-glutamyl kinase compare
PS417_27040 -5.4 -5.1 3-phosphoglycerate dehydrogenase compare
PS417_04415 -5.4 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -5.3 -13.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -5.3 -13.1 ketol-acid reductoisomerase compare
PS417_23810 -5.1 -15.9 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -5.0 -12.7 histidinol dehydrogenase compare
PS417_25725 -4.9 -17.2 anthranilate synthase component I compare
PS417_00185 -4.9 -5.3 tryptophan synthase subunit beta compare
PS417_26740 -4.8 -9.5 homoserine acetyltransferase compare
PS417_12290 -4.7 -11.8 sulfite reductase compare
PS417_00180 -4.6 -3.2 tryptophan synthase subunit alpha compare
PS417_18530 -4.6 -5.3 O-succinylhomoserine sulfhydrylase compare
PS417_24745 -4.6 -7.5 gamma-glutamyl phosphate reductase compare
PS417_12855 -4.4 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03975 -4.4 -19.6 FruA conserved
PS417_01850 -4.3 -9.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22690 -4.3 -7.1 phosphogluconate dehydratase compare
PS417_26745 -4.3 -5.8 methionine biosynthesis protein MetW compare
PS417_23995 -4.2 -1.7 preprotein translocase subunit SecG compare
PS417_03965 -4.2 -7.6 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
PS417_16465 -4.1 -15.2 sirohydrochlorin ferrochelatase compare
PS417_02005 -4.0 -13.1 glutamate synthase compare
PS417_08125 -3.9 -2.2 prephenate dehydratase compare
PS417_26730 -3.8 -2.1 pyrroline-5-carboxylate reductase compare
PS417_27795 -3.7 -2.1 orotate phosphoribosyltransferase compare
PS417_02000 -3.7 -17.0 glutamate synthase compare
PS417_02415 -3.7 -6.9 phosphoserine phosphatase compare
PS417_27195 -3.7 -1.9 N-acetylglutamate synthase compare
PS417_20125 -3.6 -5.4 phosphoribosylglycinamide formyltransferase compare
PS417_25715 -3.6 -6.7 anthranilate phosphoribosyltransferase compare
PS417_25710 -3.6 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_09725 -3.5 -12.4 transporter compare
PS417_01605 -3.4 -3.1 phosphoglycerate mutase compare
PS417_01580 -3.3 -1.5 imidazole glycerol phosphate synthase compare
PS417_26890 -3.2 -4.7 dihydroxy-acid dehydratase compare
PS417_05595 -3.2 -6.4 ornithine carbamoyltransferase compare
PS417_23110 -3.0 -6.2 2-isopropylmalate synthase compare
PS417_28220 -3.0 -3.3 LysR family transcriptional regulator compare
PS417_22520 -3.0 -4.4 histidine kinase compare
PS417_01560 -2.9 -4.3 imidazoleglycerol-phosphate dehydratase compare
PS417_03970 -2.9 -2.7 1-phosphofructokinase compare
PS417_20985 -2.8 -4.4 porin compare
PS417_24155 -2.7 -4.0 ATP-binding protein compare
PS417_21035 -2.7 -12.7 multidrug transporter compare
PS417_26995 -2.5 -11.9 phosphoserine phosphatase compare
PS417_01570 -2.5 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06375 -2.3 -1.5 deoxycytidine triphosphate deaminase compare
PS417_14940 -2.1 -3.3 LysR family transcriptional regulator compare
PS417_27010 -2.1 -8.4 threonine dehydratase compare
PS417_01710 -1.8 -7.6 histidine utilization repressor compare
PS417_27535 -1.8 -8.9 chemotaxis protein CheY compare
PS417_03925 -1.8 -6.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_21705 -1.8 -6.9 arginine N-succinyltransferase compare
PS417_12690 -1.8 -1.6 xylulose kinase compare
PS417_27875 -1.7 -7.5 histidine kinase compare
PS417_01210 -1.7 -7.9 hypothetical protein compare
PS417_06680 -1.7 -10.3 nuclease PIN compare
PS417_22385 -1.7 -8.6 quinolinate synthase A compare
PS417_22695 -1.7 -10.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20160 -1.7 -2.9 cysteine synthase compare
PS417_12695 -1.7 -5.7 mannitol dehydrogenase compare
PS417_20610 -1.6 -1.8 hypothetical protein compare
PS417_24935 -1.5 -1.0 hypothetical protein compare
PS417_11400 -1.5 -2.3 phosphoglycerate mutase compare
PS417_08195 -1.4 -8.4 hypothetical protein compare
PS417_08225 -1.4 -4.6 acetolactate synthase compare
PS417_26040 -1.4 -3.5 malate synthase compare
PS417_09705 -1.3 -4.8 hypothetical protein compare
PS417_08205 -1.3 -4.2 acetyltransferase compare
PS417_04220 -1.3 -2.0 4-carboxymuconolactone decarboxylase compare
PS417_08200 -1.3 -3.8 hypothetical protein compare
PS417_17490 -1.3 -2.4 ABC transporter ATP-binding protein compare
PS417_21750 -1.3 -10.8 acetyl-CoA synthetase compare
PS417_08155 -1.3 -2.4 integration host factor subunit beta compare
PS417_24835 -1.3 -5.5 hypothetical protein compare
PS417_08220 -1.2 -1.0 epimerase compare
PS417_06200 -1.1 -3.6 protein-PII uridylyltransferase compare
PS417_21000 -1.1 -2.7 CrfX protein compare
PS417_25930 -1.1 -6.5 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_08580 -1.1 -5.1 histidine kinase compare
PS417_16990 -1.1 -5.4 acyl-CoA dehydrogenase compare
PS417_27835 -1.1 -5.3 endoribonuclease compare
PS417_19335 -1.1 -2.8 isochorismatase compare
PS417_13165 -1.1 -1.4 peroxidase compare
PS417_13800 -1.1 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22680 -1.1 -4.4 chemotaxis protein CheY compare
PS417_23775 -1.0 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_08230 -1.0 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04410 -1.0 -1.2 hypothetical protein compare
PS417_05695 -1.0 -4.0 transcriptional regulator compare
PS417_19605 -1.0 -1.4 hypothetical protein compare
PS417_04180 -1.0 -4.4 GntR family transcriptional regulator compare
PS417_27035 -1.0 -4.2 FAD-linked oxidase compare
PS417_21360 -1.0 -1.4 termination factor Rho compare
PS417_24620 -1.0 -1.8 hypothetical protein compare
PS417_13635 -0.9 -5.1 D-ribose transporter ATP-binding protein compare
PS417_16570 -0.9 -5.5 isocitrate lyase compare
PS417_16005 -0.9 -1.9 ATPase compare
PS417_24615 -0.9 -1.4 hypothetical protein compare
PS417_17505 -0.9 -2.6 LuxR family transcriptional regulator compare
PS417_08135 -0.9 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18395 -0.9 -2.5 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_23490 -0.9 -1.5 dihydrofolate reductase compare
PS417_17455 -0.9 -2.8 cytochrome C compare
PS417_07170 -0.9 -3.2 hypothetical protein compare
PS417_17240 -0.9 -3.5 trigger factor compare
PS417_22450 -0.9 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_04650 -0.9 -1.5 D-alanine--D-alanine ligase compare
PS417_04585 -0.9 -1.7 hypothetical protein compare
PS417_23900 -0.8 -5.1 poly(A) polymerase compare
PS417_17495 -0.8 -5.2 multidrug ABC transporter permease compare
PS417_20665 -0.8 -4.2 hypothetical protein compare
PS417_21690 -0.8 -3.1 N-succinylarginine dihydrolase compare
PS417_17435 -0.8 -5.2 dehydrogenase compare
PS417_22445 -0.8 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_16195 -0.8 -1.2 AraC family transcriptional regulator compare
PS417_18420 -0.8 -2.1 deoxyribonuclease compare
PS417_08430 -0.8 -4.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_21655 -0.8 -1.2 aspartate kinase compare
PS417_17485 -0.8 -4.0 membrane protein compare
PS417_07875 -0.8 -1.0 hypothetical protein compare
PS417_00295 -0.8 -5.3 hypothetical protein compare
PS417_09695 -0.8 -1.4 hydrolase compare
PS417_08245 -0.8 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_13640 -0.8 -2.4 ribose ABC transporter permease compare
PS417_07165 -0.8 -2.9 dihydrodipicolinate synthase compare
PS417_28295 -0.8 -3.1 glutamine synthetase compare
PS417_21285 -0.8 -2.9 hypothetical protein compare
PS417_06945 -0.8 -1.1 membrane protein compare
PS417_20520 -0.8 -1.3 3-phosphoglycerate kinase compare
PS417_25940 -0.7 -4.9 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_13645 -0.7 -2.6 ABC transporter compare
PS417_12840 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_20140 -0.7 -2.5 nucleoprotein/polynucleotide-associated enzyme compare
PS417_07115 -0.7 -5.2 L-aspartate oxidase compare
PS417_01195 -0.7 -1.7 RNA-binding protein S4 compare
PS417_27865 -0.7 -2.4 LysR family transcriptional regulator compare
PS417_02705 -0.7 -2.2 urease accessory protein UreF compare
PS417_20825 -0.7 -2.2 drug:proton antiporter compare
PS417_27300 -0.7 -1.0 cell division protein ZapA compare
PS417_06895 -0.7 -2.1 DNA-binding protein compare
PS417_15085 -0.7 -2.9 ATPase AAA compare
PS417_13990 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_25380 -0.7 -1.8 hypothetical protein compare
PS417_18540 -0.7 -1.8 colicin V production CvpA compare
PS417_05570 -0.7 -2.0 DeoR faimly transcriptional regulator compare
PS417_24100 -0.7 -3.8 transcriptional regulator PdhR compare
PS417_05540 -0.7 -2.7 histidine kinase compare
PS417_09720 -0.7 -2.0 methyltransferase compare
PS417_04685 -0.7 -3.1 histidine kinase compare
PS417_13510 -0.7 -1.0 polyketide cyclase compare
PS417_14400 -0.7 -1.4 hypothetical protein compare
PS417_22840 -0.7 -1.6 tRNA-Met compare
PS417_17480 -0.7 -3.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_01960 -0.7 -1.7 pilus assembly protein compare
PS417_23770 -0.7 -1.2 exodeoxyribonuclease V subunit alpha compare
PS417_26850 -0.7 -0.8 twin-arginine translocation pathway signal protein compare
PS417_22145 -0.7 -4.9 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_21125 -0.7 -4.5 phosphoadenosine phosphosulfate reductase compare
PS417_25920 -0.7 -3.9 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_22565 -0.7 -1.1 formyltetrahydrofolate deformylase compare
PS417_15710 -0.7 -1.2 nitrate reductase compare
PS417_05445 -0.7 -1.2 DNA mismatch repair protein MutT compare
PS417_26005 -0.7 -4.0 biotin synthase compare
PS417_06530 -0.7 -2.2 membrane protein compare
PS417_24810 -0.7 -4.6 aldehyde dehydrogenase compare
PS417_27105 -0.6 -3.2 spermidine/putrescine ABC transporter permease compare
PS417_08320 -0.6 -1.3 metal-chelation protein CHAD compare
PS417_00650 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_10220 -0.6 -2.6 hypothetical protein compare
PS417_26605 -0.6 -1.1 malonate decarboxylase subunit beta compare
PS417_28100 -0.6 -2.4 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) compare
PS417_22815 -0.6 -3.6 permease compare
PS417_19160 -0.6 -3.1 hypothetical protein compare
PS417_02745 -0.6 -1.7 FMN-dependent NADH-azoreductase compare
PS417_27870 -0.6 -2.2 ATP-dependent DNA helicase RecG compare
PS417_07885 -0.6 -2.3 hypothetical protein compare
PS417_11440 -0.6 -1.7 hypothetical protein compare
PS417_16490 -0.6 -1.3 cell division protein FtsK compare
PS417_19505 -0.6 -1.9 2,4-diaminobutyrate 4-aminotransferase compare
PS417_00220 -0.6 -1.5 hypothetical protein compare
PS417_05650 -0.6 -1.7 leucyl-tRNA synthetase compare
PS417_16665 -0.6 -1.5 hypothetical protein compare
PS417_22715 -0.6 -2.1 heme oxygenase compare
PS417_27690 -0.6 -2.0 XRE family transcriptional regulator compare
PS417_12355 -0.6 -1.8 magnesium chelatase compare
PS417_15780 -0.6 -1.5 membrane protein compare
PS417_08025 -0.6 -1.3 acetylornithine aminotransferase compare
PS417_24650 -0.6 -1.1 membrane protein compare
PS417_26260 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Fructose in Pseudomonas simiae WCS417

For carbon source D-Fructose across organisms