Experiment set1IT042 for Variovorax sp. OAS795

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L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS08590 -8.0 -5.1 tryptophan 2,3-dioxygenase conserved
ABID97_RS08605 -7.2 -7.8 arylformamidase conserved
ABID97_RS07840 -6.6 -9.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS07850 -6.6 -6.4 ABC transporter ATP-binding protein compare
ABID97_RS16565 -6.6 -10.0 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS01435 -6.3 -6.1 enoyl-CoA hydratase family protein conserved
ABID97_RS14850 -6.1 -5.5 P-II family nitrogen regulator compare
ABID97_RS07855 -6.0 -4.0 ABC transporter ATP-binding protein compare
ABID97_RS23225 -5.9 -15.3 glutamate synthase-related protein compare
ABID97_RS08220 -5.9 -9.0 phosphoenolpyruvate carboxylase compare
ABID97_RS03205 -5.7 -7.8 acyl-CoA dehydrogenase conserved
ABID97_RS16910 -5.7 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS07000 -5.5 -5.3 threonine ammonia-lyase, biosynthetic compare
ABID97_RS07845 -5.4 -12.2 ABC transporter ATP-binding protein compare
ABID97_RS16600 -5.4 -8.9 CysB family HTH-type transcriptional regulator compare
ABID97_RS22625 -5.3 -11.1 HAMP domain-containing sensor histidine kinase compare
ABID97_RS06575 -5.1 -7.8 trehalose-phosphatase compare
ABID97_RS10815 -5.1 -15.3 phosphoenolpyruvate synthase compare
ABID97_RS08600 -4.9 -11.8 kynureninase conserved
ABID97_RS15380 -4.7 -8.5 nitrite/sulfite reductase compare
ABID97_RS20615 -4.7 -4.7 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS16595 -4.6 -5.0 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS02215 -4.5 -17.6 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS22620 -4.5 -11.1 response regulator transcription factor compare
ABID97_RS14260 -4.4 -8.3 FtsH protease activity modulator HflK compare
ABID97_RS25085 -4.3 -3.0 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS01565 -4.2 -12.0 DNA starvation/stationary phase protection protein compare
ABID97_RS23425 -4.2 -2.9 tRNA-Pro compare
ABID97_RS25015 -4.1 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS14265 -3.9 -9.1 protease modulator HflC compare
ABID97_RS07405 -3.9 -12.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS13990 -3.8 -2.7 amino acid aminotransferase compare
ABID97_RS09180 -3.8 -4.5 DNA polymerase I compare
ABID97_RS25525 -3.8 -5.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS06345 -3.6 -3.5 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS08775 -3.6 -2.5 ribosome small subunit-dependent GTPase A compare
ABID97_RS17895 -3.6 -8.0 transcriptional regulator NrdR compare
ABID97_RS23220 -3.5 -1.9 glutamate synthase subunit beta compare
ABID97_RS15375 -3.4 -4.2 DUF934 domain-containing protein compare
ABID97_RS02600 -3.4 -4.7 homoserine O-acetyltransferase compare
ABID97_RS01440 -3.4 -9.3 acyl-CoA dehydrogenase family protein conserved
ABID97_RS01425 -3.4 -14.9 bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase conserved
ABID97_RS02455 -3.2 -4.1 nucleotidyltransferase family protein compare
ABID97_RS16535 -3.2 -9.0 arginine/lysine/ornithine decarboxylase compare
ABID97_RS02420 -3.1 -10.2 protealysin inhibitor emfourin compare
ABID97_RS14090 -3.0 -1.8 response regulator transcription factor compare
ABID97_RS04440 -3.0 -4.9 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
ABID97_RS24920 -3.0 -2.4 Holliday junction branch migration protein RuvA compare
ABID97_RS23455 -3.0 -3.6 hypothetical protein compare
ABID97_RS01445 -3.0 -11.2 AMP-binding protein conserved
ABID97_RS15665 -3.0 -7.1 [protein-PII] uridylyltransferase compare
ABID97_RS08855 -2.9 -7.0 thiolase family protein compare
ABID97_RS14160 -2.9 -6.7 cell division protein ZapE compare
ABID97_RS16915 -2.9 -8.1 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS28635 -2.9 -7.8 IclR family transcriptional regulator compare
ABID97_RS17360 -2.9 -2.7 alpha/beta hydrolase compare
ABID97_RS07430 -2.8 -10.9 pantoate--beta-alanine ligase compare
ABID97_RS06600 -2.8 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS08860 -2.8 -3.9 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS07435 -2.8 -9.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS12180 -2.8 -2.6 hypothetical protein compare
ABID97_RS23450 -2.8 -4.9 MBOAT family protein compare
ABID97_RS03910 -2.7 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS21150 -2.7 -8.1 FAD-dependent oxidoreductase compare
ABID97_RS17600 -2.6 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS05755 -2.6 -2.5 glycosyltransferase compare
ABID97_RS13860 -2.6 -4.0 hypothetical protein compare
ABID97_RS04500 -2.5 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS20095 -2.5 -2.4 DNA topoisomerase IV subunit B compare
ABID97_RS06460 -2.5 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS05765 -2.5 -2.4 UDP-glucose 4-epimerase GalE compare
ABID97_RS14625 -2.5 -5.6 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS08920 -2.5 -7.1 SDR family NAD(P)-dependent oxidoreductase conserved
ABID97_RS14925 -2.4 -12.1 arginyltransferase compare
ABID97_RS04960 -2.4 -1.4 ATP-binding protein compare
ABID97_RS22385 -2.4 -4.6 D-amino acid dehydrogenase compare
ABID97_RS05750 -2.3 -2.7 glycosyltransferase compare
ABID97_RS17590 -2.3 -10.3 endopeptidase La compare
ABID97_RS17850 -2.3 -1.2 tetratricopeptide repeat protein compare
ABID97_RS08425 -2.3 -6.0 tryptophan synthase subunit alpha compare
ABID97_RS03805 -2.2 -1.8 ATP-binding protein compare
ABID97_RS06450 -2.2 -2.1 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS03800 -2.2 -2.9 O-antigen ligase family protein compare
ABID97_RS06190 -2.1 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS19065 -2.1 -5.1 GntR family transcriptional regulator compare
ABID97_RS07415 -2.1 -12.4 quinolinate synthase NadA compare
ABID97_RS10105 -2.1 -4.8 CBS domain-containing protein compare
ABID97_RS24055 -2.0 -2.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS19025 -2.0 -1.2 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS02460 -2.0 -13.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS08480 -2.0 -1.4 citrate synthase compare
ABID97_RS03110 -2.0 -5.5 helix-turn-helix transcriptional regulator compare
ABID97_RS14095 -2.0 -8.7 PAS domain S-box protein compare
ABID97_RS08445 -2.0 -10.3 FimV/HubP family polar landmark protein compare
ABID97_RS15490 -2.0 -5.3 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS08595 -2.0 -3.9 hypothetical protein compare
ABID97_RS23230 -2.0 -9.3 transposase compare
ABID97_RS08430 -1.9 -1.3 tryptophan synthase subunit beta compare
ABID97_RS07260 -1.9 -5.9 TIM44-like domain-containing protein compare
ABID97_RS05370 -1.9 -5.2 ATP-binding protein compare
ABID97_RS07410 -1.9 -5.0 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS15370 -1.9 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS11115 -1.8 -12.1 isocitrate lyase compare
ABID97_RS23915 -1.8 -3.8 heme o synthase compare
ABID97_RS15470 -1.8 -2.1 NADPH-dependent FMN reductase compare
ABID97_RS15465 -1.8 -11.2 sulfate ABC transporter substrate-binding protein compare
ABID97_RS11640 -1.8 -6.2 TetR family transcriptional regulator compare
ABID97_RS12575 -1.8 -1.4 ATP-grasp domain-containing protein compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS15505 -1.7 -1.2 ATP-binding cassette domain-containing protein compare
ABID97_RS16920 -1.7 -10.1 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS24170 -1.7 -4.2 ATP-binding protein compare
ABID97_RS12140 -1.7 -6.8 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS16985 -1.7 -3.6 transcriptional repressor LexA compare
ABID97_RS23645 -1.7 -2.4 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS19375 -1.7 -4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS21910 -1.6 -4.6 hypothetical protein compare
ABID97_RS03630 -1.6 -5.1 P-II family nitrogen regulator compare
ABID97_RS03125 -1.6 -7.9 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS11545 -1.6 -1.3 branched-chain amino acid ABC transporter permease compare
ABID97_RS09595 -1.6 -1.9 Arc family DNA-binding protein compare
ABID97_RS17265 -1.5 -2.9 two-component system response regulator OmpR compare
ABID97_RS05670 -1.5 -1.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS13750 -1.5 -1.2 hypothetical protein compare
ABID97_RS17270 -1.5 -7.0 ATP-binding protein compare
ABID97_RS21770 -1.5 -9.1 aminopeptidase N compare
ABID97_RS23940 -1.5 -7.1 cytochrome c oxidase subunit 3 compare
ABID97_RS25080 -1.5 -11.1 MFS transporter compare
ABID97_RS22860 -1.5 -2.6 MurR/RpiR family transcriptional regulator compare
ABID97_RS04765 -1.5 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS12345 -1.4 -8.3 alpha/beta fold hydrolase compare
ABID97_RS04710 -1.4 -6.6 malate synthase G compare
ABID97_RS08440 -1.4 -5.4 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS16690 -1.4 -3.4 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS28990 -1.4 -6.1 aspartate 1-decarboxylase compare
ABID97_RS14920 -1.4 -8.8 IclR family transcriptional regulator compare
ABID97_RS15480 -1.4 -3.8 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS23330 -1.4 -4.7 c-type cytochrome compare
ABID97_RS22380 -1.4 -3.6 winged helix-turn-helix transcriptional regulator compare
ABID97_RS10720 -1.3 -4.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS13450 -1.3 -2.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS10355 -1.3 -5.8 FadR/GntR family transcriptional regulator compare
ABID97_RS26945 -1.2 -1.3 DUF3606 domain-containing protein compare
ABID97_RS05365 -1.2 -3.3 DUF4390 domain-containing protein compare
ABID97_RS22940 -1.2 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
ABID97_RS01855 -1.2 -1.0 preprotein translocase subunit YajC compare
ABID97_RS03680 -1.2 -3.9 lysophospholipid transporter LplT compare
ABID97_RS16705 -1.2 -7.3 ribonuclease G compare
ABID97_RS03640 -1.2 -4.4 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS06365 -1.2 -1.0 TlpA disulfide reductase family protein compare
ABID97_RS05280 -1.2 -1.7 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS08435 -1.2 -1.7 phosphoribosylanthranilate isomerase compare
ABID97_RS05260 -1.2 -1.3 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS23790 -1.2 -4.8 ATP-binding cassette domain-containing protein compare
ABID97_RS09490 -1.2 -1.3 LapA family protein compare
ABID97_RS17200 -1.1 -8.6 ribonuclease R compare
ABID97_RS00255 -1.1 -7.9 type IV pilus twitching motility protein PilT compare
ABID97_RS13865 -1.1 -3.3 hypothetical protein compare
ABID97_RS20265 -1.1 -1.0 site-specific tyrosine recombinase XerD compare
ABID97_RS14930 -1.1 -5.4 leucyl/phenylalanyl-tRNA--protein transferase compare
ABID97_RS23950 -1.1 -7.4 cytochrome c oxidase assembly protein compare
ABID97_RS14975 -1.1 -2.8 hypothetical protein compare
ABID97_RS23780 -1.1 -4.5 ABC transporter permease compare
ABID97_RS23775 -1.1 -5.2 ABC transporter permease compare
ABID97_RS07390 -1.1 -3.2 rhodanese-like domain-containing protein compare
ABID97_RS18495 -1.1 -1.1 DUF2889 domain-containing protein compare
ABID97_RS15495 -1.1 -3.0 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS07500 -1.1 -1.7 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS10705 -1.1 -2.2 H-NS histone family protein compare
ABID97_RS08240 -1.1 -1.6 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS27140 -1.1 -1.5 winged helix-turn-helix domain-containing protein compare
ABID97_RS06160 -1.1 -5.1 GTP-binding protein compare
ABID97_RS07440 -1.1 -5.5 L-aspartate oxidase compare
ABID97_RS23245 -1.0 -5.9 MFS transporter compare
ABID97_RS20610 -1.0 -3.4 DNA-binding protein YbiB compare
ABID97_RS02120 -1.0 -5.8 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS06180 -1.0 -2.9 ATP-dependent protease subunit HslV compare
ABID97_RS25190 -1.0 -7.1 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABID97_RS25935 -1.0 -2.6 Lrp/AsnC family transcriptional regulator compare
ABID97_RS02110 -1.0 -7.8 type IV pilus modification protein PilV compare
ABID97_RS24045 -1.0 -3.3 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS17250 -1.0 -3.4 3-hydroxybutyrate dehydrogenase compare
ABID97_RS15360 -1.0 -5.0 GTP-binding protein compare
ABID97_RS21945 -1.0 -3.1 hemolysin family protein compare
ABID97_RS02115 -1.0 -5.5 PilW family protein compare
ABID97_RS09680 -1.0 -1.5 hypothetical protein compare
ABID97_RS01595 -0.9 -3.6 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS15365 -0.9 -4.1 sulfate adenylyltransferase subunit CysD compare
ABID97_RS24205 -0.9 -5.0 IclR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS13220 -0.9 -1.5 aldehyde dehydrogenase compare
ABID97_RS25895 -0.9 -1.3 ABC transporter permease compare
ABID97_RS23965 -0.9 -6.1 cytochrome c oxidase subunit II compare
ABID97_RS02135 -0.9 -4.6 GspH/FimT family pseudopilin compare
ABID97_RS29050 -0.9 -2.3 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS11290 -0.9 -0.7 DNA repair protein RadC compare
ABID97_RS07450 -0.9 -1.8 DUF3460 family protein compare
ABID97_RS27865 -0.9 -1.3 alpha/beta hydrolase family protein compare
ABID97_RS23655 -0.9 -2.1 YicC/YloC family endoribonuclease compare
ABID97_RS27820 -0.9 -1.8 ABC transporter substrate-binding protein compare
ABID97_RS05195 -0.9 -2.8 type VI secretion system protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Tryptophan in Variovorax sp. OAS795

For carbon source L-Tryptophan across organisms