Experiment set1IT042 for Pseudomonas sp. S08-1

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
OH686_13585 +4.1 36.2 Exodeoxyribonuclease III compare
OH686_02440 +3.2 27.5 Phosphogluconate repressor HexR, RpiR family compare
OH686_21275 +2.5 19.4 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
OH686_21255 +2.4 21.4 Arginine/ornithine ABC transporter, substrate-binding protein AotJ compare
OH686_09470 +2.3 4.7 RNA chaperone Hfq compare
OH686_21265 +2.2 20.5 Arginine/ornithine ABC transporter, permease protein AotM compare
OH686_13995 +2.2 21.5 polyphosphate kinase 1 compare
OH686_21280 +2.2 8.9 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
OH686_04520 +2.1 13.3 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_21260 +1.9 14.7 Arginine/ornithine ABC transporter, permease protein AotQ compare
OH686_09650 +1.7 13.9 Carbamoyltransferase in large core OS assembly cluster compare
OH686_21270 +1.6 7.2 Succinylglutamate desuccinylase/aspartoacylase compare
OH686_03000 +1.5 2.4 Flagellar biosynthesis protein FlgN compare
OH686_21115 +1.4 10.3 Transcriptional regulator, AsnC family compare
OH686_21350 +1.3 4.4 tRNA-Arg compare
OH686_21120 +1.3 12.3 Indolepyruvate ferredoxin oxidoreductase subunit compare
OH686_02840 +1.3 2.4 flagellar hook-basal body complex protein FliE compare
OH686_12330 +1.2 2.6 hypothetical protein' product='hypothetical protein compare
OH686_20370 +1.2 3.2 Cys-tRNA(Pro) deacylase YbaK compare
OH686_11095 +1.2 3.9 Two-component system response regulator OmpR compare
OH686_02445 +1.1 4.6 Aldose 1-epimerase compare
OH686_12955 +1.1 2.2 hypothetical protein compare
OH686_23175 +1.1 4.1 Two-component transcriptional response regulator, OmpR family compare
OH686_20365 +1.1 6.0 Glycerol-3-phosphate regulon repressor GlpR compare
OH686_13750 +1.1 2.0 hypothetical protein compare
OH686_02855 +1.1 6.7 Flagellar regulatory protein FleQ compare
OH686_04625 +1.0 7.4 Branched-chain amino acid ABC transporter, ATP-binding protein LivF compare
OH686_17020 +1.0 9.0 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
OH686_02835 +1.0 7.9 flagellar M-ring protein FliF compare
OH686_07765 +1.0 6.6 Oxaloacetate decarboxylase compare
OH686_21080 +1.0 8.4 4-hydroxyphenylpyruvate dioxygenase compare
OH686_11465 +1.0 8.1 Putrescine ABC transporter putrescine-binding protein PotF compare
OH686_00855 +1.0 8.7 Isovaleryl-CoA dehydrogenase compare
OH686_02785 +0.9 7.1 flagellar motor switch protein FliM compare
OH686_06340 +0.9 7.1 D-3-phosphoglycerate dehydrogenase compare
OH686_02830 +0.9 6.2 flagellar motor switch protein FliG compare
OH686_01620 +0.9 7.3 UTP--glucose-1-phosphate uridylyltransferase compare
OH686_11450 +0.9 7.1 Putrescine transport system permease protein PotH compare
OH686_05315 +0.8 4.0 ribonuclease D compare
OH686_04610 +0.8 6.9 Branched-chain amino acid ABC transporter, permease protein LivH compare
OH686_02780 +0.8 5.5 Flagellar motor switch protein FliN compare
OH686_09655 +0.8 3.1 CDS compare
OH686_04605 +0.8 7.0 Branched-chain amino acid ABC transporter, substrate-binding protein LivJ compare
OH686_11475 +0.8 6.3 glutamine synthetase family protein compare
OH686_02745 +0.8 7.0 flagellar biosynthesis protein FlhA compare
OH686_02760 +0.8 6.2 flagellar biosynthetic protein FliR compare
OH686_13330 +0.8 7.1 Signal transduction histidine kinase regulating C4-dicarboxylate transport system compare
OH686_04615 +0.8 7.0 Branched-chain amino acid ABC transporter, permease protein LivM compare
OH686_13350 +0.8 6.1 Glutamate/aspartate ABC transporter, substrate-binding protein GltI compare
OH686_13340 +0.8 5.6 Glutamate/aspartate ABC transporter, permease protein GltK compare
OH686_11455 +0.8 6.0 Putrescine transport ATP-binding protein PotG compare
OH686_04620 +0.8 6.7 Branched-chain amino acid ABC transporter, ATP-binding protein LivG compare
OH686_13345 +0.8 6.4 Glutamate/aspartate ABC transporter, permease protein GltJ compare
OH686_18185 +0.8 6.1 RNA polymerase sigma factor RpoS compare
OH686_10895 +0.8 6.3 type IV pilus biogenesis protein PilJ compare
OH686_22150 +0.8 3.1 beta-ketoacyl-acyl-carrier-protein synthase II compare
OH686_11445 +0.7 4.7 Putrescine transport system permease protein PotI compare
OH686_18330 +0.7 1.3 CDS compare
OH686_20470 +0.7 5.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
OH686_02825 +0.7 4.3 Flagellar assembly protein FliH compare
OH686_21235 +0.7 4.5 phenylalanine-4-hydroxylase compare
OH686_08705 +0.7 5.6 Dipeptide ABC transporter, permease protein DppB compare
OH686_04055 +0.7 6.3 hypothetical protein compare
OH686_02770 +0.7 4.2 flagellar biosynthetic protein FliP compare
OH686_11080 +0.7 5.9 Ribosomal protein S6--L-glutamate ligase compare
OH686_23710 +0.7 2.8 hypothetical protein compare
OH686_04515 +0.7 4.2 4-hydroxybenzoyl-CoA thioesterase domain protein compare
OH686_07495 +0.7 1.6 hypothetical protein compare
OH686_21420 +0.7 3.1 hypothetical protein' product='hypothetical protein compare
OH686_21240 +0.7 5.7 Phenylalanine hydroxylase transcriptional activator PhhR compare
OH686_13325 +0.7 4.2 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
OH686_07545 +0.7 6.1 arginine decarboxylase compare
OH686_21250 +0.7 6.3 acetate--CoA ligase compare
OH686_01410 +0.7 2.0 hypothetical protein compare
OH686_17820 +0.7 1.1 Amino acid ABC transporter, ATP-binding protein YhdZ compare
OH686_23215 +0.7 1.2 hypothetical protein compare
OH686_22190 +0.6 5.0 Transcriptional regulator, AcrR family compare
OH686_22545 +0.6 3.9 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) compare
OH686_16820 +0.6 2.4 hypothetical protein compare
OH686_14400 +0.6 4.0 hypothetical protein compare
OH686_01280 +0.6 5.4 Glycogen synthase, ADP-glucose transglucosylase compare
OH686_16815 +0.6 3.4 Hemoglobin-like protein HbO compare
OH686_13830 +0.6 1.1 hypothetical protein compare
OH686_02775 +0.6 1.4 flagellar biosynthetic protein FliO compare
OH686_04800 +0.6 5.5 Putative hydrolase compare
OH686_10520 +0.6 1.4 hypothetical protein compare
OH686_22205 +0.6 4.9 putative lipoprotein compare
OH686_00435 +0.6 2.2 hypothetical protein compare
OH686_13825 +0.6 2.6 Regulator of nucleoside diphosphate kinase compare
OH686_10585 +0.6 4.7 Molybdopterin-synthase adenylyltransferase compare
OH686_10835 +0.6 4.0 ATP-dependent RNA helicase RhlE compare
OH686_10600 +0.6 2.4 Ser-tRNA(Ala) deacylase or Gly-tRNA(Ala) deacylase compare
OH686_08920 +0.6 5.7 Phytochrome, two-component sensor histidine kinase / cyanobacterial phytochrome 1 compare
OH686_22590 +0.6 3.7 Organic hydroperoxide resistance transcriptional regulator compare
OH686_17880 +0.6 0.8 hypothetical protein compare
OH686_05440 +0.6 4.3 FMN-dependent NADH-azoreductase compare
OH686_14415 +0.6 4.4 Adenylylsulfate kinase compare
OH686_10590 +0.6 4.2 Cysteine synthase compare
OH686_14505 +0.6 3.3 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
OH686_03035 +0.6 3.5 Transcriptional regulator, AcrR family compare
OH686_12050 +0.6 2.2 hypothetical protein' product='hypothetical protein compare
OH686_13820 +0.6 2.1 hypothetical protein' product='hypothetical protein compare
OH686_13100 +0.6 2.2 hypothetical protein compare
OH686_02765 +0.6 3.8 flagellar biosynthetic protein FliQ compare
OH686_10570 +0.6 2.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase compare
OH686_18005 +0.6 1.3 Aminopeptidase N compare
OH686_22875 +0.6 1.8 Transcriptional regulator, MerR family compare
OH686_13580 +0.6 3.2 Inner membrane protein YedI compare
OH686_16390 +0.5 5.1 Type IV fimbriae expression regulatory protein PilR compare
OH686_02860 +0.5 1.7 Two-component system sensor histidine kinase compare
OH686_08035 +0.5 2.6 ribosomal-protein-alanine acetyltransferase compare
OH686_23765 +0.5 2.6 CDS compare
OH686_02820 +0.5 4.7 flagellar protein export ATPase FliI compare
OH686_01220 +0.5 1.3 Repair of Iron Centers di-iron protein compare
OH686_10900 +0.5 2.1 type IV pili signal transduction protein PilI compare
OH686_12405 +0.5 1.5 hypothetical protein compare
OH686_08550 +0.5 3.8 Ribosome hibernation promoting factor Hpf compare
OH686_04485 +0.5 4.1 Transcriptional regulator, LysR family compare
OH686_02450 +0.5 4.5 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) compare
OH686_12145 +0.5 4.7 Alginate biosynthesis two-component system response regulator AlgB compare
OH686_02160 +0.5 4.5 GDP-mannose 6-dehydrogenase compare
OH686_14490 +0.5 4.7 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
OH686_10060 +0.5 4.2 NADP-dependent malic enzyme compare
OH686_19610 +0.5 2.1 Transcriptional regulator, AraC family compare
OH686_13095 +0.5 3.7 Transcriptional regulator, RpiR family compare
OH686_11505 +0.5 3.0 agmatine deiminase compare
OH686_08680 +0.5 3.6 Dna binding response regulator PrrA (RegA) compare
OH686_03750 +0.5 1.8 Peptidyl-prolyl cis-trans isomerase PpiB compare
OH686_02795 +0.5 2.0 Flagellar hook-length control protein FliK compare
OH686_22015 +0.5 1.7 hypothetical protein compare
OH686_00335 +0.5 4.5 BarA-associated response regulator UvrY ( GacA SirA) compare
OH686_15835 +0.5 3.4 ADP-ribose pyrophosphatase compare
OH686_02845 +0.5 4.0 Flagellar two-component response regulator FleR compare
OH686_04240 +0.5 4.7 Exporter protein, RND family compare
OH686_14500 +0.5 4.0 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) compare
OH686_16395 +0.5 4.1 Two-component sensor PilS compare
OH686_13105 +0.5 3.0 Delta 1-pyrroline-2-carboxylate reductase (NAD(P)H) compare
OH686_06680 +0.5 1.4 CDS compare
OH686_06320 +0.5 4.5 hypothetical protein compare
OH686_08715 +0.5 3.6 Dipeptide ABC transporter, ATP-binding protein DppD compare
OH686_13360 +0.5 1.8 hypothetical protein compare
OH686_13925 +0.5 3.7 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD compare
OH686_02990 +0.5 3.9 hypothetical protein compare
OH686_01435 +0.5 1.8 CDS compare
OH686_14560 +0.5 1.1 CDS compare
OH686_19690 +0.5 2.4 hypothetical protein compare
OH686_18830 +0.5 2.5 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
OH686_14405 +0.5 2.6 hypothetical protein compare
OH686_04245 +0.5 2.6 BNR/Asp-box repeat protein compare
OH686_03250 +0.5 0.9 hypothetical protein compare
OH686_19850 +0.5 0.6 hypothetical protein compare
OH686_09525 +0.5 3.5 flagellar motor stator protein MotA compare
OH686_14155 +0.5 2.1 hypothetical protein compare
OH686_10885 +0.5 3.7 still frameshift probable component of chemotactic signal transduction system compare
OH686_22095 +0.5 3.7 LSU rRNA pseudouridine(955/2504/2580) synthase compare
OH686_14665 +0.5 0.8 glutaredoxin 3 compare
OH686_14495 +0.5 4.0 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
OH686_06600 +0.5 1.5 Gliding motility-associated ABC transporter ATP-binding protein GldA compare
OH686_17875 +0.4 2.1 23S rRNA (adenine(1618)-N(6))-methyltransferase compare
OH686_22235 +0.4 2.3 Aerotolerance protein BatB / Aerotolerance protein BatC compare
OH686_06590 +0.4 2.9 Gliding motility-associated ABC transporter substrate-binding protein GldG compare
OH686_13400 +0.4 3.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
OH686_08435 +0.4 1.4 Hydrolase, alpha/beta fold family compare
OH686_09520 +0.4 3.5 Flagellar motor rotation protein MotB compare
OH686_00915 +0.4 1.4 Thiol peroxidase, Tpx-type compare
OH686_02275 +0.4 2.2 hypothetical protein compare
OH686_22825 +0.4 2.7 Ribonucleotide reductase, alpha subunit compare
OH686_18645 +0.4 0.8 Two-component transcriptional response regulator, LuxR family compare
OH686_02960 +0.4 3.8 Flagellar hook protein FlgE compare
OH686_13090 +0.4 1.4 hypothetical protein' product='hypothetical protein compare
OH686_10595 +0.4 3.2 Serine acetyltransferase compare
OH686_02105 +0.4 3.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OH686_19975 +0.4 1.5 hypothetical protein compare
OH686_05040 +0.4 1.7 hypothetical protein compare
OH686_02925 +0.4 3.7 flagellar hook-associated protein 3 compare
OH686_13605 +0.4 2.9 Phosphoglucomutase or Phosphomannomutase compare
OH686_16205 +0.4 2.6 hypothetical protein compare
OH686_18665 +0.4 2.5 Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase RhlG compare
OH686_20610 +0.4 1.8 hypothetical protein compare
OH686_02755 +0.4 3.2 flagellar biosynthetic protein FlhB compare
OH686_18815 +0.4 3.2 hypothetical protein compare
OH686_16510 +0.4 3.1 Type IV pilin PilA compare
OH686_02920 +0.4 3.8 hypothetical protein compare
OH686_18360 +0.4 2.0 Short-chain dehydrogenase/reductase SDR compare
OH686_21700 +0.4 1.5 hypothetical protein compare
OH686_03115 +0.4 2.8 Ribosome modulation factor compare
OH686_09740 +0.4 0.6 hypothetical protein compare
OH686_11480 +0.4 3.1 Gamma-glutamyl-GABA hydrolase compare
OH686_23800 +0.4 1.8 23S rRNA (uridine(2552)-2'-O)-methyltransferase compare
OH686_02240 +0.4 0.5 hypothetical protein compare
OH686_10610 +0.4 1.9 GTP-binding protein TypA/BipA compare
OH686_15535 +0.4 3.0 hypothetical protein compare
OH686_02880 +0.4 2.0 Flagellin protein FlaG compare
OH686_01000 +0.4 2.0 Multidrug efflux system, outer membrane factor lipoprotein compare
OH686_14275 +0.4 2.1 hypothetical regulator compare
OH686_15145 +0.4 2.9 Cyclic AMP receptor protein compare
OH686_15735 +0.4 1.7 Aspartyl protease compare
OH686_06315 +0.4 3.4 hypothetical protein compare
OH686_14195 +0.4 2.3 hypothetical protein compare
OH686_16030 +0.4 0.8 CopG protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source D-Glucose across organisms