Experiment set1IT042 for Escherichia coli BW25113

Compare to:

Glycolic Acid carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
b1854 pykA -4.7 -10.0 pyruvate kinase (NCBI) compare
b3124 garK -4.5 -11.2 glycerate kinase I (RefSeq) compare
b4468 glcE -4.4 -6.6 glycolate oxidase FAD binding subunit (NCBI) conserved
b2979 glcD -4.3 -9.0 glycolate dehydrogenase, putative FAD-linked subunit (from data) conserved
b0508 hyi -4.1 -9.4 hydroxypyruvate isomerase (NCBI) conserved
b2980 glcC -3.8 -7.1 DNA-binding transcriptional dual regulator, glycolate-binding (NCBI) conserved
b0507 gcl -3.7 -12.5 glyoxylate carboligase (NCBI) conserved
b4467 glcF -3.6 -9.2 glycolate oxidase iron-sulfur subunit (NCBI) conserved
b3601 mtlR -3.5 -8.8 DNA-binding repressor (NCBI) compare
b0484 copA -3.4 -15.8 copper transporter (NCBI) compare
b0162 yaeG -3.4 -7.4 orf, hypothetical protein (VIMSS) compare
b2587 kgtP -3.3 -8.2 alpha-ketoglutarate transporter (NCBI) compare
b2113 mrp -3.1 -7.8 putative ATPase (VIMSS) compare
b0390 aroM -3.0 -9.5 hypothetical protein (NCBI) compare
b4020 yjbB -3.0 -13.9 predicted transporter (NCBI) compare
b3807 cyaY -2.8 -6.6 frataxin-like protein (NCBI) compare
b3670 ilvN -2.5 -8.0 acetolactate synthase small subunit (NCBI) compare
b2463 maeB -2.5 -7.8 malic enzyme (NCBI) compare
b3934 cytR -2.3 -10.0 DNA-binding transcriptional dual regulator (NCBI) compare
b4069 acs -2.3 -10.6 acetyl-coenzyme A synthetase (NCBI) compare
b3603 lldP -2.1 -14.0 (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) compare
b1805 fadD -2.1 -11.1 acyl-CoA synthase (NCBI) conserved
b0221 yafH -2.0 -10.7 putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS) compare
b3127 garP -2.0 -5.5 predicted (D)-galactarate transporter (NCBI) compare
b3053 glnE -1.9 -7.4 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase (NCBI) compare
b3908 sodA -1.9 -5.7 superoxide dismutase, manganese (VIMSS) compare
b4190 yjfP -1.9 -6.4 predicted hydrolase (NCBI) compare
b2707 srlR -1.8 -7.4 DNA-bindng transcriptional repressor (NCBI) compare
b3292 zntR -1.8 -5.9 zinc-responsive transcriptional regulator (NCBI) compare
b2410 yfeH -1.7 -5.2 predicted inner membrane protein (NCBI) compare
b3403 pck -1.7 -10.0 phosphoenolpyruvate carboxykinase (NCBI) compare
b4390 nadR -1.7 -9.6 probable nadAB transcriptional regulator (VIMSS) compare
b4260 pepA -1.7 -10.2 leucyl aminopeptidase (NCBI) compare
b3780 rhlB -1.6 -8.9 ATP-dependent RNA helicase (NCBI) compare
b1249 cls -1.6 -8.1 cardiolipin synthetase (NCBI) compare
b1060 yceP -1.6 -6.0 orf, hypothetical protein (VIMSS) compare
b3779 gpp -1.6 -9.9 guanosine pentaphosphatase/exopolyphosphatase (NCBI) compare
b2029 gnd -1.6 -7.3 6-phosphogluconate dehydrogenase (NCBI) compare
b3455 livG -1.5 -5.1 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3289 rsmB -1.5 -9.3 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) compare
b4067 actP -1.5 -8.0 acetate permease (NCBI) compare
b3454 livF -1.5 -6.8 ATP-binding component of leucine transport (VIMSS) compare
b3675 yidG -1.5 -6.1 predicted inner membrane protein (NCBI) compare
b0932 pepN -1.5 -9.2 aminopeptidase N (NCBI) compare
b0334 prpD -1.5 -5.5 2-methylcitrate dehydratase (NCBI) compare
b3494 yhiO -1.5 -5.8 universal stress protein UspB (NCBI) compare
b2749 ygbE -1.4 -6.0 conserved inner membrane protein (NCBI) compare
b3457 livH -1.4 -6.7 leucine/isoleucine/valine transporter subunit (NCBI) compare
b4256 yjgM -1.4 -7.6 predicted acetyltransferase (NCBI) compare
b2908 pepP -1.4 -6.3 proline aminopeptidase P II (NCBI) compare
b3423 glpR -1.4 -6.4 DNA-binding transcriptional repressor (NCBI) compare
b1784 yeaH -1.3 -6.1 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b3156 yhbS -1.3 -6.2 predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) compare
b1905 ftn -1.3 -7.6 ferritin iron storage protein (cytoplasmic) (NCBI) compare
b0509 glxR -1.2 -5.7 tartronate semialdehyde reductase, NADH-dependent (NCBI) compare
b3355 prkB -1.2 -7.5 predicted phosphoribulokinase (NCBI) compare
b3746 yieN -1.2 -7.6 putative 2-component regulator (VIMSS) compare
b3432 glgB -1.2 -7.6 glycogen branching enzyme (NCBI) compare
b3401 yrfI -1.1 -7.0 orf, hypothetical protein (VIMSS) compare
b0198 metI -1.1 -6.3 DL-methionine transporter subunit (NCBI) compare
b3456 livM -1.1 -6.2 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3460 livJ -1.1 -6.0 leucine/isoleucine/valine transporter subunit (NCBI) compare
b4024 lysC -1.1 -6.4 aspartate kinase III (NCBI) compare
b4403 yjtD +1.0 5.7 predicted rRNA methyltransferase (NCBI) compare
b0426 yajQ +1.1 6.0 orf, hypothetical protein (VIMSS) compare
b1725 yniA +1.2 6.7 predicted phosphotransferase/kinase (NCBI) compare
b2142 yohK +1.3 5.7 predicted inner membrane protein (NCBI) compare
b4371 rsmC +1.4 7.5 16S ribosomal RNA m2G1207 methyltransferase (NCBI) compare
b0955 ycbZ +1.7 9.6 predicted peptidase (NCBI) compare
b4015 aceA +1.8 6.9 isocitrate lyase (NCBI) compare
b2141 yohJ +1.9 7.3 hypothetical protein (NCBI) compare
b3279 yrdA +1.9 13.8 putative transferase (VIMSS) compare
b3349 slyD +2.3 13.6 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) compare
b2976 glcB +2.5 16.7 malate synthase (NCBI) compare
b3248 yhdE +2.6 7.9 Maf-like protein (NCBI) compare
b2977 glcG +2.6 9.2 hypothetical protein (NCBI) compare
b2535 csiE +2.6 19.7 orf, hypothetical protein (VIMSS) compare
b2735 ygbI +2.7 12.2 predicted DNA-binding transcriptional regulator (RefSeq) compare
b3740 gidB +2.8 17.8 glucose-inhibited division protein B (NCBI) compare
b4014 aceB +3.0 14.6 malate synthase (NCBI) compare


Specific phenotypes for carbon source Glycolic Acid across organisms