Experiment set1IT042 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium m-arsenite 1 mM

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_4300 +3.0 7.7 Predicted membrane protein compare
EX28DRAFT_2268 +2.9 11.9 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2269 +2.7 11.7 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_1125 +2.6 13.5 D-fructose-responsive transcription factor compare
EX28DRAFT_2270 +2.5 2.9 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_2948 +2.5 11.3 Uncharacterized conserved protein compare
EX28DRAFT_3281 +2.3 19.5 Predicted ATPase compare
EX28DRAFT_3564 +2.2 4.9 Transcriptional regulators compare
EX28DRAFT_4399 +1.9 13.8 glycerol kinase compare
EX28DRAFT_4015 +1.9 6.2 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_1608 +1.9 8.0 fumarase, class II (EC 4.2.1.2) compare
EX28DRAFT_4400 +1.9 11.6 MIP family channel proteins compare
EX28DRAFT_4324 +1.8 3.6 probable addiction module antidote protein compare
EX28DRAFT_4287 +1.7 9.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
EX28DRAFT_2578 +1.6 8.6 Transcriptional regulator/sugar kinase compare
EX28DRAFT_3746 +1.6 7.1 Predicted membrane protein compare
EX28DRAFT_2115 +1.6 4.9 hypothetical protein compare
EX28DRAFT_2267 +1.5 3.4 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2837 +1.5 7.5 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_2653 +1.5 5.8 Transcriptional regulator Crl compare
EX28DRAFT_2540 +1.5 5.7 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_0734 +1.5 6.8 RNA compare
EX28DRAFT_0925 +1.5 10.5 Uncharacterised protein family (UPF0259) compare
EX28DRAFT_4289 +1.5 10.3 Branched-chain amino acid ABC-type transport system, permease components compare
EX28DRAFT_0395 +1.4 6.5 1-phosphofructokinase compare
EX28DRAFT_4288 +1.4 10.6 ABC-type branched-chain amino acid transport system, permease component compare
EX28DRAFT_0848 +1.4 3.8 two component transcriptional regulator, LuxR family compare
EX28DRAFT_4286 +1.4 5.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
EX28DRAFT_0358 +1.4 6.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_2539 +1.4 4.4 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0065 +1.3 1.7 thioredoxin compare
EX28DRAFT_2583 +1.3 5.7 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_4293 +1.2 8.6 ABC-type branched-chain amino acid transport systems, periplasmic component compare
EX28DRAFT_1540 +1.2 3.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
EX28DRAFT_3923 +1.2 4.1 Predicted transcriptional regulators compare
EX28DRAFT_3278 +1.2 3.6 Glutathione S-transferase compare
EX28DRAFT_2543 +1.2 4.7 protoheme IX farnesyltransferase compare
EX28DRAFT_3936 +1.2 1.8 hypothetical protein compare
EX28DRAFT_2904 +1.1 9.2 phosphoenolpyruvate-protein phosphotransferase compare
EX28DRAFT_1367 +1.1 1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3391 +1.1 8.4 Gamma-aminobutyrate permease and related permeases compare
EX28DRAFT_3574 +1.1 1.2 Protein of unknown function (DUF1435) compare
EX28DRAFT_2703 +1.1 2.2 Protein of unknown function (DUF2799) compare
EX28DRAFT_1497 +1.1 1.3 hypothetical protein compare
EX28DRAFT_3577 +1.0 3.3 tRNA compare
EX28DRAFT_0853 +1.0 2.3 respiratory nitrate reductase chaperone NarJ compare
EX28DRAFT_4387 +1.0 4.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_3198 +1.0 4.5 Phosphoheptose isomerase compare
EX28DRAFT_0177 +1.0 2.8 arsenate reductase (glutaredoxin) compare
EX28DRAFT_3233 +1.0 1.8 RNA compare
EX28DRAFT_0854 +1.0 4.3 respiratory nitrate reductase, gamma subunit compare
EX28DRAFT_2138 +1.0 5.4 molybdopterin synthase sulfurylase MoeB compare
EX28DRAFT_0620 +0.9 1.1 Flagellar protein FliT compare
EX28DRAFT_3968 +0.9 2.7 Predicted membrane protein compare
EX28DRAFT_2623 +0.9 6.6 Enolase compare
EX28DRAFT_4061 +0.9 3.0 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_0926 +0.9 1.2 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_4269 +0.9 1.1 SOS regulatory protein LexA compare
EX28DRAFT_4244 +0.9 1.7 hypothetical protein compare
EX28DRAFT_3419 +0.9 6.2 Fructose-1,6-bisphosphatase compare
EX28DRAFT_2085 +0.9 2.3 Uncharacterized conserved protein compare
EX28DRAFT_4347 +0.9 0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2541 +0.9 1.4 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_3621 +0.9 3.7 molybdenum cofactor synthesis domain compare
EX28DRAFT_0186 +0.9 5.7 Predicted P-loop ATPase fused to an acetyltransferase compare
EX28DRAFT_2655 +0.9 2.1 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins compare
EX28DRAFT_4208 +0.8 2.9 phosphonate C-P lyase system protein PhnK compare
EX28DRAFT_2961 +0.8 2.5 yecA family protein compare
EX28DRAFT_3752 +0.8 1.7 Protein of unknown function (DUF3461) compare
EX28DRAFT_0602 +0.8 1.2 Dextransucrase DSRB compare
EX28DRAFT_0299 +0.8 2.6 Acetyltransferases, including N-acetylases of ribosomal proteins compare
EX28DRAFT_2137 +0.8 3.0 molybdenum cofactor synthesis domain compare
EX28DRAFT_3375 +0.8 1.0 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0601 +0.8 2.4 Protein of unknown function (DUF2525) compare
EX28DRAFT_4495 +0.8 3.0 Dienelactone hydrolase and related enzymes compare
EX28DRAFT_1037 +0.8 1.3 Protein of unknown function (DUF2526) compare
EX28DRAFT_3423 +0.8 1.1 Soluble cytochrome b562 compare
EX28DRAFT_1131 +0.8 2.6 hypothetical protein compare
EX28DRAFT_1541 +0.8 2.0 hypothetical protein compare
EX28DRAFT_4348 +0.8 2.2 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_3947 +0.8 1.7 RNA compare
EX28DRAFT_3476 +0.8 1.0 hypothetical protein compare
EX28DRAFT_0851 +0.8 6.1 respiratory nitrate reductase, alpha subunit compare
EX28DRAFT_3708 +0.7 1.1 Transcriptional regulators compare
EX28DRAFT_4290 +0.7 1.9 ABC-type branched-chain amino acid transport systems, periplasmic component compare
EX28DRAFT_0808 +0.7 3.7 Serine/threonine protein kinase compare
EX28DRAFT_0160 +0.7 1.3 hypothetical protein compare
EX28DRAFT_0600 +0.7 1.7 RNA compare
EX28DRAFT_0740 +0.7 2.1 PTS system, mannose/fructose/sorbose family, IID component compare
EX28DRAFT_2033 +0.7 1.7 pyruvate formate-lyase 1-activating enzyme compare
EX28DRAFT_2995 +0.7 2.3 Protein of unknown function (DUF2884) compare
EX28DRAFT_0742 +0.7 3.2 PTS system, mannose/fructose/sorbose family, IIB component compare
EX28DRAFT_4221 +0.7 1.7 Sugar kinases, ribokinase family compare
EX28DRAFT_1772 +0.7 1.4 methionine-R-sulfoxide reductase compare
EX28DRAFT_0922 +0.7 1.1 TonB family C-terminal domain compare
EX28DRAFT_0712 +0.7 0.5 DNA polymerase III, theta subunit compare
EX28DRAFT_1816 +0.7 5.2 transcription-repair coupling factor (mfd) compare
EX28DRAFT_4448 +0.7 1.6 PPIC-type PPIASE domain compare
EX28DRAFT_1610 +0.7 2.1 mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8) compare
EX28DRAFT_4405 +0.7 0.5 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_1218 +0.7 0.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
EX28DRAFT_4173 +0.7 1.4 Predicted redox protein, regulator of disulfide bond formation compare
EX28DRAFT_1894 +0.7 1.4 Uncharacterized component of anaerobic dehydrogenases compare
EX28DRAFT_2738 +0.7 2.2 ADP-ribose pyrophosphatase compare
EX28DRAFT_4262 +0.7 1.1 phage shock protein G compare
EX28DRAFT_3383 +0.7 0.9 Alpha/beta hydrolase family compare
EX28DRAFT_0342 +0.7 2.1 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) compare
EX28DRAFT_0800 +0.7 1.6 FHA domain protein compare
EX28DRAFT_0852 +0.7 3.3 respiratory nitrate reductase beta subunit compare
EX28DRAFT_1309 +0.7 1.8 hypothetical protein compare
EX28DRAFT_1217 +0.7 1.3 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2425 +0.7 0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3825 +0.7 2.2 YsaB-like lipoprotein compare
EX28DRAFT_4544 +0.7 0.3 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2209 +0.7 3.8 molybdenum cofactor biosynthesis protein A, bacterial compare
EX28DRAFT_1038 +0.7 1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2049 +0.6 2.1 hypothetical protein compare
EX28DRAFT_1330 +0.6 1.1 hypothetical protein compare
EX28DRAFT_2992 +0.6 1.9 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
EX28DRAFT_0544 +0.6 4.0 Amino acid transporters compare
EX28DRAFT_2400 +0.6 0.6 Cold shock proteins compare
EX28DRAFT_4169 +0.6 2.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3166 +0.6 1.5 Uncharacterized conserved protein compare
EX28DRAFT_2326 +0.6 1.4 ribosome silencing factor RsfS/YbeB/iojap compare
EX28DRAFT_0976 +0.6 2.1 phage shock protein A (PspA) family protein compare
EX28DRAFT_3967 +0.6 2.2 Domain of unknown function (DUF202) compare
EX28DRAFT_0127 +0.6 1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3232 +0.6 1.4 transcription elongation factor GreA compare
EX28DRAFT_2194 +0.6 1.7 Superfamily II DNA and RNA helicases compare
EX28DRAFT_4457 +0.6 1.6 nucleotide sugar dehydrogenase compare
EX28DRAFT_3270 +0.6 2.9 N-acetylglutamate synthase and related acetyltransferases compare
EX28DRAFT_4338 +0.6 3.8 molybdenum cofactor guanylyltransferase, proteobacterial compare
EX28DRAFT_2453 +0.6 1.6 Predicted membrane-bound metal-dependent hydrolases compare
EX28DRAFT_4362 +0.6 2.2 transcriptional regulator, DeoR family compare
EX28DRAFT_2681 +0.6 3.7 Methyltransferase domain compare
EX28DRAFT_3369 +0.6 0.7 RNA chaperone Hfq compare
EX28DRAFT_4451 +0.6 2.8 Superfamily II DNA and RNA helicases compare
EX28DRAFT_3639 +0.6 2.6 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_2787 +0.6 1.2 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
EX28DRAFT_4359 +0.6 2.7 Tagatose-1,6-bisphosphate aldolase compare
EX28DRAFT_4117 +0.6 4.5 glucose-1-phosphate adenylyltransferase compare
EX28DRAFT_1412 +0.6 1.6 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_2913 +0.6 3.4 Transcriptional regulators compare
EX28DRAFT_0791 +0.6 1.3 type VI secretion-associated protein, BMA_A0400 family compare
EX28DRAFT_2838 +0.6 2.9 Membrane proteins related to metalloendopeptidases compare
EX28DRAFT_0084 +0.6 1.2 4Fe-4S dicluster domain compare
EX28DRAFT_1987 +0.6 2.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3676 +0.5 1.7 mraZ protein compare
EX28DRAFT_2491 +0.5 1.6 restart primosome assembly protein PriC compare
EX28DRAFT_0125 +0.5 0.4 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4118 +0.5 4.3 glycogen/starch synthase, ADP-glucose type compare
EX28DRAFT_4043 +0.5 2.9 cellulose synthase operon protein YhjQ compare
EX28DRAFT_2467 +0.5 1.8 Thioredoxin domain-containing protein compare
EX28DRAFT_0789 +0.5 2.9 type VI secretion system peptidoglycan-associated domain compare
EX28DRAFT_4301 +0.5 1.9 Protein of unknown function (DUF2500) compare
EX28DRAFT_2464 +0.5 1.2 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
EX28DRAFT_2754 +0.5 2.9 hypothetical protein compare
EX28DRAFT_1195 +0.5 2.0 Domain of unknown function (DUF4186) compare
EX28DRAFT_2603 +0.5 1.4 Probable taurine catabolism dioxygenase compare
EX28DRAFT_4483 +0.5 1.6 magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) compare
EX28DRAFT_1385 +0.5 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_4085 +0.5 2.5 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_4042 +0.5 0.9 Protein of unknown function (DUF2629) compare
EX28DRAFT_4534 +0.5 1.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_4454 +0.5 4.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase compare
EX28DRAFT_1306 +0.5 2.9 hypothetical protein compare
EX28DRAFT_1810 +0.5 2.6 NAD-dependent protein deacetylases, SIR2 family compare
EX28DRAFT_4029 +0.5 2.1 transcriptional regulator, LacI family compare
EX28DRAFT_1342 +0.5 0.8 hypothetical protein compare
EX28DRAFT_3687 +0.5 0.5 D-alanine--D-alanine ligase compare
EX28DRAFT_3455 +0.5 2.5 putative dehydratase, YjhG/YagF family compare
EX28DRAFT_0900 +0.5 1.0 phage lysis regulatory protein, LysB family compare
EX28DRAFT_0718 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0271 +0.5 3.3 fatty oxidation complex, alpha subunit FadJ compare
EX28DRAFT_1818 +0.5 1.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_1065 +0.5 1.3 Predicted transcriptional regulators compare
EX28DRAFT_2207 +0.5 2.9 molybdenum cofactor biosynthesis protein MoaC compare
EX28DRAFT_2100 +0.5 2.1 Putative bacterial sensory transduction regulator compare
EX28DRAFT_3353 +0.5 1.0 Fumarate reductase subunit C compare
EX28DRAFT_4361 +0.5 2.4 Sugar kinases, ribokinase family compare
EX28DRAFT_4485 +0.5 1.6 uncharacterized domain 1 compare
EX28DRAFT_1892 +0.5 2.2 Uncharacterized protein involved in formation of curli polymers compare
EX28DRAFT_2697 +0.5 1.9 ribosomal subunit interface protein compare
EX28DRAFT_2774 +0.5 2.7 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2887 +0.5 2.8 cysteine desulfurase, sulfur acceptor subunit CsdE compare
EX28DRAFT_0470 +0.5 2.0 Transcriptional regulators compare
EX28DRAFT_3707 +0.5 3.3 Gamma-aminobutyrate permease and related permeases compare
EX28DRAFT_1700 +0.5 0.6 hypothetical protein compare
EX28DRAFT_4115 +0.5 4.1 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
EX28DRAFT_1271 +0.5 1.3 NlpC/P60 family compare
EX28DRAFT_4213 +0.5 2.0 phosphonate metabolism protein PhnP compare
EX28DRAFT_1048 +0.5 2.3 PAS domain S-box compare
EX28DRAFT_0236 +0.5 2.2 Chloride channel protein EriC compare
EX28DRAFT_2082 +0.5 2.5 hypothetical protein compare
EX28DRAFT_0940 +0.5 1.7 pseudouridine synthase compare
EX28DRAFT_1303 +0.5 0.9 hypothetical protein compare
EX28DRAFT_0796 +0.5 2.2 hypothetical protein compare
EX28DRAFT_0423 +0.5 0.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_1297 +0.5 2.6 hypothetical protein compare
EX28DRAFT_0416 +0.5 1.2 AraC-type DNA-binding domain-containing proteins compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium m-arsenite across organisms