Experiment set1IT041 for Pseudomonas simiae WCS417

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01565 -7.1 -6.2 imidazole glycerol phosphate synthase compare
PS417_18595 -5.9 -7.0 3-isopropylmalate dehydratase compare
PS417_23800 -5.5 -11.2 ketol-acid reductoisomerase compare
PS417_01575 -5.5 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02005 -5.3 -14.6 glutamate synthase compare
PS417_26740 -5.3 -13.0 homoserine acetyltransferase compare
PS417_01855 -5.2 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_08125 -5.1 -2.2 prephenate dehydratase compare
PS417_00185 -5.1 -6.1 tryptophan synthase subunit beta compare
PS417_02510 -5.1 -11.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -5.0 -8.3 3-isopropylmalate dehydrogenase compare
PS417_27040 -4.9 -5.8 3-phosphoglycerate dehydrogenase compare
PS417_25725 -4.9 -17.6 anthranilate synthase component I compare
PS417_28220 -4.9 -3.6 LysR family transcriptional regulator compare
PS417_27835 -4.5 -8.5 endoribonuclease compare
PS417_04415 -4.5 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -4.4 -10.9 anthranilate synthase component II compare
PS417_18600 -4.4 -3.8 isopropylmalate isomerase compare
PS417_16465 -4.4 -15.0 sirohydrochlorin ferrochelatase compare
PS417_23810 -4.3 -13.9 acetolactate synthase 3 catalytic subunit compare
PS417_02000 -4.3 -16.2 glutamate synthase compare
PS417_18560 -4.3 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_12855 -4.3 -7.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06375 -4.3 -1.8 deoxycytidine triphosphate deaminase compare
PS417_23995 -4.2 -1.8 preprotein translocase subunit SecG compare
PS417_01850 -4.2 -9.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18530 -4.1 -8.7 O-succinylhomoserine sulfhydrylase compare
PS417_23805 -4.1 -5.6 acetolactate synthase 3 regulatory subunit compare
PS417_22690 -4.1 -7.7 phosphogluconate dehydratase compare
PS417_04420 -4.1 -9.7 histidinol dehydrogenase compare
PS417_23545 -4.0 -4.1 gamma-glutamyl kinase compare
PS417_27795 -3.8 -2.2 orotate phosphoribosyltransferase compare
PS417_26995 -3.8 -12.2 phosphoserine phosphatase compare
PS417_05595 -3.7 -8.3 ornithine carbamoyltransferase compare
PS417_20125 -3.7 -5.2 phosphoribosylglycinamide formyltransferase compare
PS417_24745 -3.6 -3.5 gamma-glutamyl phosphate reductase compare
PS417_00180 -3.6 -4.9 tryptophan synthase subunit alpha compare
PS417_26745 -3.5 -6.9 methionine biosynthesis protein MetW compare
PS417_12290 -3.5 -8.0 sulfite reductase compare
PS417_02415 -3.2 -7.5 phosphoserine phosphatase compare
PS417_27195 -3.1 -2.6 N-acetylglutamate synthase compare
PS417_26730 -3.1 -2.4 pyrroline-5-carboxylate reductase compare
PS417_25715 -3.0 -5.1 anthranilate phosphoribosyltransferase compare
PS417_01580 -3.0 -2.0 imidazole glycerol phosphate synthase compare
PS417_01570 -2.9 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26890 -2.9 -5.4 dihydroxy-acid dehydratase compare
PS417_23770 -2.9 -4.3 exodeoxyribonuclease V subunit alpha compare
PS417_25710 -2.9 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_24155 -2.8 -4.1 ATP-binding protein compare
PS417_23110 -2.7 -6.3 2-isopropylmalate synthase compare
PS417_22620 -2.5 -5.9 pyruvate kinase compare
PS417_21705 -2.4 -8.3 arginine N-succinyltransferase compare
PS417_20160 -2.4 -3.8 cysteine synthase compare
PS417_01605 -2.4 -2.3 phosphoglycerate mutase compare
PS417_07170 -2.4 -3.5 hypothetical protein compare
PS417_02555 -2.3 -16.4 exoribonuclease R compare
PS417_20985 -2.3 -4.9 porin compare
PS417_13510 -2.3 -2.5 polyketide cyclase compare
PS417_06645 -2.2 -9.1 RNA polymerase-associated protein RapA compare
PS417_01560 -2.2 -3.3 imidazoleglycerol-phosphate dehydratase compare
PS417_23900 -2.0 -11.1 poly(A) polymerase compare
PS417_21125 -1.9 -6.1 phosphoadenosine phosphosulfate reductase compare
PS417_18690 -1.9 -6.1 aromatic amino acid aminotransferase compare
PS417_25985 -1.7 -3.2 dethiobiotin synthetase compare
PS417_03310 -1.7 -4.6 carbonate dehydratase compare
PS417_08230 -1.6 -2.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_06680 -1.5 -10.2 nuclease PIN compare
PS417_23775 -1.5 -3.4 exodeoxyribonuclease V subunit beta compare
PS417_21980 -1.5 -6.5 permease DsdX compare
PS417_08225 -1.4 -6.3 acetolactate synthase compare
PS417_08195 -1.4 -7.8 hypothetical protein compare
PS417_18590 -1.4 -2.1 SAM-dependent methyltransferase compare
PS417_08205 -1.4 -2.6 acetyltransferase compare
PS417_26005 -1.4 -7.1 biotin synthase compare
PS417_26540 -1.4 -7.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase conserved
PS417_27435 -1.3 -6.1 polyphosphate kinase compare
PS417_08245 -1.3 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07595 -1.3 -4.9 PasA protein compare
PS417_25990 -1.3 -5.8 malonyl-CoA O-methyltransferase compare
PS417_08200 -1.3 -3.2 hypothetical protein compare
PS417_21655 -1.3 -1.9 aspartate kinase compare
PS417_28230 -1.3 -1.9 transcriptional regulator compare
PS417_08220 -1.2 -1.0 epimerase compare
PS417_28070 -1.2 -6.2 phosphate ABC transporter ATP-binding protein compare
PS417_03260 -1.2 -2.7 5S ribosomal RNA compare
PS417_27715 -1.2 -1.3 Fe-S oxidoreductase compare
PS417_05455 -1.2 -5.3 XRE family transcriptional regulator compare
PS417_12555 -1.2 -4.9 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_08130 -1.2 -1.9 aspartate aminotransferase compare
PS417_20665 -1.2 -6.2 hypothetical protein compare
PS417_23360 -1.1 -1.6 hypothetical protein compare
PS417_01290 -1.1 -2.1 ADP-ribose diphosphatase compare
PS417_08155 -1.1 -1.9 integration host factor subunit beta compare
PS417_26390 -1.1 -2.4 acyltransferase compare
PS417_27010 -1.1 -6.7 threonine dehydratase compare
PS417_04080 -1.1 -2.5 peptide ABC transporter substrate-binding protein compare
PS417_21700 -1.1 -3.3 arginine N-succinyltransferase compare
PS417_26000 -1.0 -5.3 8-amino-7-oxononanoate synthase compare
PS417_26985 -1.0 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21690 -1.0 -4.7 N-succinylarginine dihydrolase compare
PS417_14515 -1.0 -2.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_06895 -1.0 -3.6 DNA-binding protein compare
PS417_04500 -1.0 -2.2 hypothetical protein compare
PS417_21430 -0.9 -1.8 3-oxoacyl-ACP synthase compare
PS417_09235 -0.9 -1.3 molecular chaperone compare
PS417_06200 -0.9 -3.6 protein-PII uridylyltransferase compare
PS417_05165 -0.9 -3.5 cytosol aminopeptidase compare
PS417_07165 -0.9 -2.1 dihydrodipicolinate synthase compare
PS417_12400 -0.9 -2.3 oxidoreductase compare
PS417_04650 -0.9 -1.7 D-alanine--D-alanine ligase compare
PS417_08580 -0.9 -4.6 histidine kinase compare
PS417_27585 -0.9 -2.7 diaminopimelate epimerase compare
PS417_01635 -0.9 -5.9 nitrogen regulation protein NR(I) compare
PS417_27005 -0.9 -1.0 membrane protein compare
PS417_21725 -0.9 -2.2 amino acid transporter compare
PS417_27800 -0.8 -3.2 exodeoxyribonuclease III compare
PS417_13165 -0.8 -1.8 peroxidase compare
PS417_21750 -0.8 -7.1 acetyl-CoA synthetase compare
PS417_22385 -0.8 -6.0 quinolinate synthase A compare
PS417_01195 -0.8 -2.1 RNA-binding protein S4 compare
PS417_23390 -0.8 -3.8 ubiquinol oxidase subunit II compare
PS417_27035 -0.8 -3.1 FAD-linked oxidase compare
PS417_23370 -0.8 -3.8 protoheme IX farnesyltransferase compare
PS417_05695 -0.8 -3.3 transcriptional regulator compare
PS417_13800 -0.8 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_16715 -0.8 -1.6 DoxX family protein compare
PS417_28080 -0.8 -5.6 phosphate ABC transporter permease compare
PS417_18395 -0.8 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_18055 -0.8 -1.6 general secretion pathway protein GspK compare
PS417_08990 -0.8 -2.8 ABC transporter substrate-binding protein compare
PS417_15135 -0.8 -1.7 hypothetical protein compare
PS417_23375 -0.8 -1.2 cytochrome C oxidase compare
PS417_13050 -0.8 -2.0 N-acetylglucosamine-6-sulfatase compare
PS417_00065 -0.7 -1.5 3-methyladenine DNA glycosylase compare
PS417_22695 -0.7 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_24310 -0.7 -2.1 ankyrin compare
PS417_03705 -0.7 -1.3 2-alkenal reductase compare
PS417_13140 -0.7 -1.4 oxidoreductase compare
PS417_24835 -0.7 -3.2 hypothetical protein compare
PS417_07010 -0.7 -2.3 pseudouridine synthase compare
PS417_01875 -0.7 -2.0 polyhydroxyalkanoic acid system protein compare
PS417_16735 -0.7 -2.5 aldehyde dehydrogenase compare
PS417_10045 -0.7 -2.1 hypothetical protein compare
PS417_04315 -0.7 -2.4 superoxide dismutase compare
PS417_08510 -0.7 -1.1 LysR family transcriptional regulator compare
PS417_14400 -0.7 -2.2 hypothetical protein compare
PS417_12245 -0.7 -2.5 GNAT family acetyltransferase compare
PS417_22060 -0.7 -1.3 hypothetical protein compare
PS417_00370 -0.7 -1.1 hypothetical protein compare
PS417_22520 -0.7 -1.9 histidine kinase compare
PS417_01035 -0.7 -2.0 ATP-binding protein compare
PS417_22615 -0.7 -2.3 hypothetical protein compare
PS417_20030 -0.7 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_00755 -0.7 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_13490 -0.7 -1.6 hypothetical protein compare
PS417_05535 -0.7 -1.1 Fis family transcriptional regulator compare
PS417_22565 -0.7 -1.1 formyltetrahydrofolate deformylase compare
PS417_21510 -0.7 -1.4 histidine kinase compare
PS417_21285 -0.7 -2.3 hypothetical protein compare
PS417_24620 -0.6 -1.9 hypothetical protein compare
PS417_23950 -0.6 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_23385 -0.6 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_00705 -0.6 -1.1 MarR family transcriptional regulator compare
PS417_02895 -0.6 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_27640 -0.6 -1.3 TetR family transcriptional regulator compare
PS417_27665 -0.6 -2.2 diguanylate cyclase compare
PS417_10860 -0.6 -1.9 flagellar basal body rod protein FlgG compare
PS417_20610 -0.6 -1.3 hypothetical protein compare
PS417_07115 -0.6 -4.8 L-aspartate oxidase compare
PS417_20645 -0.6 -4.7 membrane protein compare
PS417_17735 -0.6 -2.7 LacI family transcriptional regulator compare
PS417_11440 -0.6 -1.4 hypothetical protein compare
PS417_17805 -0.6 -1.6 microcin B17 processing protein McbC compare
PS417_22445 -0.6 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_13990 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_01825 -0.6 -2.0 chemotaxis protein compare
PS417_15225 -0.6 -1.9 alpha/beta hydrolase compare
PS417_15465 -0.6 -2.1 carboxynorspermidine decarboxylase compare
PS417_21875 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_15125 -0.6 -1.4 glutathione S-transferase compare
PS417_04270 -0.6 -3.5 ribonuclease G compare
PS417_19350 -0.6 -2.0 GTP cyclohydrolase compare
PS417_17455 -0.6 -1.7 cytochrome C compare
PS417_10010 -0.6 -1.9 Replication protein P compare
PS417_20825 -0.6 -1.5 drug:proton antiporter compare
PS417_10220 -0.6 -2.9 hypothetical protein compare
PS417_02360 -0.6 -1.6 nitrate reductase compare
PS417_11450 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_05120 -0.6 -1.4 RNA polymerase subunit sigma-24 compare
PS417_11485 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_03515 -0.6 -1.4 type III secretion protein compare
PS417_15400 -0.6 -1.3 hypothetical protein compare
PS417_07360 -0.5 -2.8 ArtI protein compare
PS417_02150 -0.5 -3.4 potassium/proton antiporter compare
PS417_03925 -0.5 -3.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_22685 -0.5 -3.8 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_19650 -0.5 -2.2 chemotaxis protein CheW compare
PS417_28170 -0.5 -1.9 transcriptional regulator compare
PS417_25705 -0.5 -1.2 lipoate--protein ligase compare
PS417_15885 -0.5 -1.4 GCN5 family acetyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Pseudomonas simiae WCS417

For carbon source D-Glucose across organisms