Experiment set1IT041 for Escherichia coli BW25113

Compare to:

Glycolic Acid carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
b0508 hyi -4.7 -9.5 hydroxypyruvate isomerase (NCBI) conserved
b2980 glcC -4.3 -8.6 DNA-binding transcriptional dual regulator, glycolate-binding (NCBI) conserved
b3124 garK -4.1 -11.8 glycerate kinase I (RefSeq) compare
b0507 gcl -3.7 -13.5 glyoxylate carboligase (NCBI) conserved
b0162 yaeG -3.5 -7.8 orf, hypothetical protein (VIMSS) compare
b1854 pykA -3.4 -11.2 pyruvate kinase (NCBI) compare
b0484 copA -3.4 -16.0 copper transporter (NCBI) compare
b0390 aroM -3.3 -11.2 hypothetical protein (NCBI) compare
b4467 glcF -3.1 -10.6 glycolate oxidase iron-sulfur subunit (NCBI) conserved
b0505 allA -3.1 -5.0 ureidoglycolate hydrolase (NCBI) compare
b3601 mtlR -3.1 -9.3 DNA-binding repressor (NCBI) compare
b4468 glcE -3.1 -6.4 glycolate oxidase FAD binding subunit (NCBI) conserved
b2587 kgtP -3.0 -7.5 alpha-ketoglutarate transporter (NCBI) compare
b3670 ilvN -3.0 -8.3 acetolactate synthase small subunit (NCBI) compare
b4020 yjbB -2.9 -11.5 predicted transporter (NCBI) compare
b2979 glcD -2.7 -9.2 glycolate dehydrogenase, putative FAD-linked subunit (from data) conserved
b2113 mrp -2.7 -6.1 putative ATPase (VIMSS) compare
b2463 maeB -2.5 -9.0 malic enzyme (NCBI) compare
b3807 cyaY -2.4 -8.7 frataxin-like protein (NCBI) compare
b3934 cytR -2.4 -12.1 DNA-binding transcriptional dual regulator (NCBI) compare
b3603 lldP -2.2 -12.4 (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) compare
b3127 garP -2.2 -6.2 predicted (D)-galactarate transporter (NCBI) compare
b3423 glpR -2.2 -11.0 DNA-binding transcriptional repressor (NCBI) compare
b4190 yjfP -1.9 -6.4 predicted hydrolase (NCBI) compare
b3053 glnE -1.8 -6.9 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase (NCBI) compare
b0775 bioB -1.8 -6.1 biotin synthase (NCBI) compare
b2908 pepP -1.7 -8.3 proline aminopeptidase P II (NCBI) compare
b0777 bioC -1.7 -6.2 predicted methltransferase, enzyme of biotin synthesis (NCBI) compare
b3403 pck -1.7 -9.6 phosphoenolpyruvate carboxykinase (NCBI) compare
b1805 fadD -1.7 -9.4 acyl-CoA synthase (NCBI) conserved
b3457 livH -1.7 -7.1 leucine/isoleucine/valine transporter subunit (NCBI) compare
b2707 srlR -1.7 -5.1 DNA-bindng transcriptional repressor (NCBI) compare
b2029 gnd -1.7 -8.1 6-phosphogluconate dehydrogenase (NCBI) compare
b3289 rsmB -1.7 -10.7 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) compare
b4260 pepA -1.6 -9.9 leucyl aminopeptidase (NCBI) compare
b3454 livF -1.6 -7.1 ATP-binding component of leucine transport (VIMSS) compare
b4390 nadR -1.6 -8.9 probable nadAB transcriptional regulator (VIMSS) compare
b0221 yafH -1.6 -8.3 putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS) compare
b3375 yhfR -1.5 -8.0 putative transcriptional regulator (VIMSS) compare
b3494 yhiO -1.5 -5.4 universal stress protein UspB (NCBI) compare
b0932 pepN -1.4 -9.2 aminopeptidase N (NCBI) compare
b3456 livM -1.4 -5.5 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3780 rhlB -1.4 -8.3 ATP-dependent RNA helicase (NCBI) compare
b0279 yagM -1.4 -5.0 CP4-6 prophage; predicted protein (NCBI) compare
b0509 glxR -1.4 -5.4 tartronate semialdehyde reductase, NADH-dependent (NCBI) compare
b4024 lysC -1.4 -7.3 aspartate kinase III (NCBI) compare
b3455 livG -1.3 -5.7 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3779 gpp -1.3 -8.1 guanosine pentaphosphatase/exopolyphosphatase (NCBI) compare
b2392 mntH -1.3 -6.4 manganese transport protein MntH (NCBI) compare
b0334 prpD -1.3 -5.6 2-methylcitrate dehydratase (NCBI) compare
b0198 metI -1.3 -7.9 DL-methionine transporter subunit (NCBI) compare
b4256 yjgM -1.3 -7.3 predicted acetyltransferase (NCBI) compare
b3460 livJ -1.2 -8.1 leucine/isoleucine/valine transporter subunit (NCBI) compare
b0223 yafJ -1.1 -5.1 predicted amidotransfease (NCBI) compare
b3156 yhbS -1.1 -5.6 predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) compare
b3908 sodA -1.1 -5.1 superoxide dismutase, manganese (VIMSS) compare
b0197 metQ -1.1 -5.5 DL-methionine transporter subunit (NCBI) compare
b3355 prkB -1.1 -6.6 predicted phosphoribulokinase (NCBI) compare
b0776 bioF -1.0 -5.0 8-amino-7-oxononanoate synthase (NCBI) compare
b0426 yajQ +1.1 5.1 orf, hypothetical protein (VIMSS) compare
b0058 rluA +1.1 5.5 pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) compare
b0050 apaG +1.2 5.8 hypothetical protein (NCBI) compare
b3397 nudE +1.2 8.1 ADP-ribose diphosphatase (NCBI) compare
b0008 talB +1.2 7.1 transaldolase B (NCBI) compare
b3166 truB +1.3 8.6 tRNA pseudouridine synthase B (NCBI) compare
b4371 rsmC +1.4 8.0 16S ribosomal RNA m2G1207 methyltransferase (NCBI) compare
b0931 pncB +1.4 7.1 nicotinate phosphoribosyltransferase (NCBI) compare
b3279 yrdA +1.5 11.2 putative transferase (VIMSS) compare
b2142 yohK +1.6 8.8 predicted inner membrane protein (NCBI) compare
b0955 ycbZ +1.7 9.5 predicted peptidase (NCBI) compare
b4015 aceA +1.8 9.0 isocitrate lyase (NCBI) compare
b2976 glcB +2.1 14.6 malate synthase (NCBI) compare
b2735 ygbI +2.3 8.9 predicted DNA-binding transcriptional regulator (RefSeq) compare
b3349 slyD +2.3 13.4 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) compare
b3248 yhdE +2.3 6.9 Maf-like protein (NCBI) compare
b2535 csiE +2.4 18.2 orf, hypothetical protein (VIMSS) compare
b2977 glcG +2.4 10.0 hypothetical protein (NCBI) compare
b4014 aceB +2.9 12.9 malate synthase (NCBI) compare
b3740 gidB +3.1 19.8 glucose-inhibited division protein B (NCBI) compare


Specific phenotypes for carbon source Glycolic Acid across organisms