Experiment set1IT041 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium m-arsenite 1 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4156 -5.9 -2.2 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0536 -5.5 -2.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_2585 -5.4 -2.1 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4493 -5.1 -5.6 Transcriptional regulator compare
EX28DRAFT_0167 -4.9 -1.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_2252 -4.8 -1.9 TolA protein compare
EX28DRAFT_3667 -4.8 -3.4 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_2958 -4.8 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0538 -4.8 -9.1 histidinol-phosphate aminotransferase compare
EX28DRAFT_3754 -4.7 -1.1 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_4397 -4.5 -11.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_2701 -4.3 -7.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2916 -4.2 -9.4 diaminopimelate decarboxylase compare
EX28DRAFT_4419 -4.1 -1.9 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_0933 -4.1 -12.0 tryptophan synthase, beta subunit compare
EX28DRAFT_2893 -4.1 -6.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0932 -4.0 -4.7 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2027 -4.0 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4297 -4.0 -1.8 cell division ATP-binding protein FtsE compare
EX28DRAFT_0934 -3.9 -12.4 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4418 -3.9 -8.6 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_4153 -3.9 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2531 -3.8 -5.1 endopeptidase La compare
EX28DRAFT_3669 -3.8 -7.1 3-isopropylmalate dehydrogenase compare
EX28DRAFT_2650 -3.8 -8.8 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2864 -3.7 -7.7 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0537 -3.7 -10.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2651 -3.7 -5.1 glutamate 5-kinase compare
EX28DRAFT_2635 -3.7 -7.8 Fructose-2,6-bisphosphatase compare
EX28DRAFT_3401 -3.7 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0726 -3.7 -3.5 C-terminal peptidase (prc) compare
EX28DRAFT_2117 -3.6 -13.5 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_4386 -3.6 -3.2 Signal transduction histidine kinase compare
EX28DRAFT_1122 -3.6 -12.0 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_0534 -3.6 -4.9 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_3046 -3.5 -10.1 cystathionine beta-lyase, bacterial compare
EX28DRAFT_3668 -3.5 -7.8 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_2272 -3.5 -11.2 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_3730 -3.5 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_4123 -3.5 -4.3 transcriptional regulator, DeoR family compare
EX28DRAFT_2474 -3.4 -7.7 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_4120 -3.4 -6.5 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_3614 -3.4 -7.8 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_1123 -3.4 -9.2 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_0936 -3.3 -4.9 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0166 -3.3 -11.5 polyphosphate kinase 1 compare
EX28DRAFT_3276 -3.3 -6.2 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_4422 -3.3 -5.2 argininosuccinate lyase compare
EX28DRAFT_2548 -3.2 -5.3 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4292 -3.2 -9.1 Acetyltransferase (GNAT) domain compare
EX28DRAFT_4341 -3.1 -3.1 Protein-disulfide isomerase compare
EX28DRAFT_0291 -3.1 -3.2 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4421 -3.1 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4544 -3.1 -0.7 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2851 -3.1 -2.9 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_0046 -3.0 -1.8 shikimate dehydrogenase compare
EX28DRAFT_0214 -3.0 -4.4 cysteine synthase A compare
EX28DRAFT_1124 -3.0 -10.6 sucrose-6-phosphate hydrolase compare
EX28DRAFT_2216 -3.0 -7.2 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_0529 -3.0 -6.6 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0540 -2.9 -5.4 ATP phosphoribosyltransferase compare
EX28DRAFT_4436 -2.9 -9.2 Transcriptional regulator compare
EX28DRAFT_1719 -2.9 -1.5 integration host factor, alpha subunit compare
EX28DRAFT_0533 -2.9 -4.3 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0535 -2.9 -5.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_3670 -2.9 -7.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_3275 -2.9 -10.5 Glutamate synthase domain 2 compare
EX28DRAFT_4411 -2.9 -8.0 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2846 -2.8 -5.8 adenylyl-sulfate kinase compare
EX28DRAFT_4443 -2.8 -8.6 dihydroxy-acid dehydratase compare
EX28DRAFT_3081 -2.8 -14.4 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_0206 -2.8 -7.2 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_1684 -2.7 -7.9 FeS assembly protein SufD compare
EX28DRAFT_0935 -2.7 -4.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_4444 -2.7 -4.3 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_3224 -2.7 -4.5 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_4437 -2.7 -4.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4331 -2.7 -7.3 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_0861 -2.7 -6.4 Response regulator receiver domain compare
EX28DRAFT_1882 -2.7 -6.7 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_0207 -2.7 -8.6 sulfate ABC transporter, permease protein CysW compare
EX28DRAFT_2043 -2.7 -7.3 transcriptional regulator, AsnC family compare
EX28DRAFT_0111 -2.7 -2.1 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2702 -2.7 -6.9 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0205 -2.7 -9.8 sulfate/thiosulfate-binding protein compare
EX28DRAFT_4170 -2.6 -9.1 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_2917 -2.6 -3.8 Transcriptional regulator compare
EX28DRAFT_1686 -2.6 -13.2 FeS assembly protein SufB compare
EX28DRAFT_0272 -2.6 -1.7 phosphohistidine phosphatase, SixA compare
EX28DRAFT_4350 -2.5 -0.8 nitrogen regulation protein NR(I) compare
EX28DRAFT_3883 -2.5 -2.6 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_3729 -2.5 -6.1 pantoate--beta-alanine ligase compare
EX28DRAFT_2938 -2.5 -2.4 tRNA compare
EX28DRAFT_3645 -2.4 -4.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0108 -2.4 -1.3 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0539 -2.4 -4.1 histidinol dehydrogenase compare
EX28DRAFT_4446 -2.4 -5.6 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_1683 -2.4 -11.3 cysteine desulfurases, SufSfamily compare
EX28DRAFT_2265 -2.4 -0.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2050 -2.4 -10.8 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_2169 -2.3 -7.7 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2853 -2.3 -6.9 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_4152 -2.3 -1.4 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_0292 -2.3 -1.1 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0738 -2.3 -3.5 Predicted membrane protein compare
EX28DRAFT_2118 -2.3 -3.0 arsenate reductase (glutaredoxin) compare
EX28DRAFT_2240 -2.2 -3.0 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2852 -2.2 -8.4 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2213 -2.2 -3.2 dethiobiotin synthase compare
EX28DRAFT_1682 -2.2 -9.4 SufE protein probably involved in Fe-S center assembly compare
EX28DRAFT_4452 -2.1 -2.7 thioredoxin compare
EX28DRAFT_3724 -2.1 -6.1 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_0764 -2.1 -4.3 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_0322 -2.1 -7.8 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_3297 -2.1 -7.2 ribonuclease, Rne/Rng family compare
EX28DRAFT_0331 -2.1 -3.5 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0038 -2.1 -2.4 K+ transport systems, NAD-binding component compare
EX28DRAFT_3671 -2.1 -2.0 RNA compare
EX28DRAFT_2225 -2.1 -7.7 3-carboxymuconate cyclase compare
EX28DRAFT_2999 -2.1 -3.3 Fe-S cluster protector protein compare
EX28DRAFT_4478 -2.0 -3.7 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_1871 -2.0 -7.6 BssS protein family compare
EX28DRAFT_0132 -2.0 -3.7 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1685 -2.0 -8.6 FeS assembly ATPase SufC compare
EX28DRAFT_4507 -2.0 -4.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_4384 -2.0 -6.1 Superoxide dismutase compare
EX28DRAFT_2699 -2.0 -4.9 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3901 -2.0 -8.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1881 -2.0 -10.9 Membrane glycosyltransferase compare
EX28DRAFT_0332 -1.9 -10.5 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0531 -1.9 -7.8 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0228 -1.9 -1.5 tRNA compare
EX28DRAFT_3613 -1.9 -4.1 RNA compare
EX28DRAFT_2546 -1.9 -7.5 2-dehydropantoate 2-reductase compare
EX28DRAFT_3725 -1.9 -10.6 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
EX28DRAFT_4066 -1.9 -8.2 Universal stress protein B (UspB) compare
EX28DRAFT_2847 -1.9 -8.0 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_4296 -1.9 -3.8 putative protein insertion permease FtsX compare
EX28DRAFT_0116 -1.9 -2.6 FeS assembly protein IscX compare
EX28DRAFT_1986 -1.9 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4442 -1.9 -4.8 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_0327 -1.9 -7.6 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_4440 -1.8 -6.7 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_2848 -1.8 -9.5 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_3267 -1.8 -9.2 Leucyl aminopeptidase compare
EX28DRAFT_4158 -1.8 -2.5 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_0208 -1.8 -3.6 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_0440 -1.8 -8.2 ATPases involved in chromosome partitioning compare
EX28DRAFT_2849 -1.8 -6.0 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_1626 -1.7 -2.3 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_2008 -1.7 -4.5 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_4271 -1.7 -0.9 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4299 -1.7 -1.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_1121 -1.7 -1.9 Sugar kinases, ribokinase family compare
EX28DRAFT_0333 -1.7 -6.3 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0073 -1.7 -1.2 Negative regulator of sigma E activity compare
EX28DRAFT_0948 -1.7 -1.6 hypothetical protein compare
EX28DRAFT_3879 -1.7 -3.8 Glycosyltransferase compare
EX28DRAFT_4155 -1.7 -3.0 DNA adenine methylase (dam) compare
EX28DRAFT_0769 -1.7 -1.3 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_1623 -1.7 -5.1 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_2243 -1.7 -3.6 cation diffusion facilitator family transporter compare
EX28DRAFT_3898 -1.7 -1.8 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_3461 -1.6 -2.4 ornithine carbamoyltransferase compare
EX28DRAFT_3368 -1.6 -1.1 tRNA dimethylallyltransferase compare
EX28DRAFT_2890 -1.6 -1.4 tRNA compare
EX28DRAFT_2299 -1.6 -7.6 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0286 -1.6 -1.7 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3864 -1.6 -6.8 Membrane-bound metallopeptidase compare
EX28DRAFT_2214 -1.6 -1.6 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_2288 -1.6 -2.0 negative regulator of replication initiation SeqA compare
EX28DRAFT_0362 -1.6 -7.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_2271 -1.6 -3.9 hypothetical protein compare
EX28DRAFT_3314 -1.5 -1.0 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_1834 -1.5 -4.6 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_2530 -1.5 -3.0 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_0334 -1.5 -2.0 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2331 -1.5 -7.9 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_0323 -1.5 -4.6 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2974 -1.5 -5.3 transketolase, bacterial and yeast compare
EX28DRAFT_4266 -1.5 -2.6 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_3728 -1.5 -1.7 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_3449 -1.5 -1.8 Predicted membrane protein compare
EX28DRAFT_2520 -1.5 -8.8 ABC-type multidrug transport system, ATPase and permease components compare
EX28DRAFT_2250 -1.5 -2.2 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3070 -1.5 -2.0 Predicted phosphohydrolases compare
EX28DRAFT_0325 -1.5 -4.2 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_1650 -1.5 -1.9 ribonuclease T compare
EX28DRAFT_1363 -1.5 -5.0 Domain of unknown function (DUF1852) compare
EX28DRAFT_3082 -1.5 -4.0 Uncharacterized conserved protein compare
EX28DRAFT_0329 -1.5 -5.3 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0074 -1.5 -6.5 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_1827 -1.5 -4.4 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
EX28DRAFT_2945 -1.4 -2.4 tyrosine recombinase XerD compare
EX28DRAFT_3647 -1.4 -4.3 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0076 -1.4 -4.2 elongation factor 4 compare
EX28DRAFT_1624 -1.4 -3.0 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_3616 -1.4 -1.8 threonine synthase compare
EX28DRAFT_2721 -1.4 -2.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3408 -1.4 -6.1 Uncharacterized conserved protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium m-arsenite across organisms