Experiment set1IT041 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Sodium Chlorite 0.3 mM

Group: stress
Media: marine_broth_2216 + Sodium Chlorite (0.3 mM)
Culturing: Cola_ML5, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.5 generations
By: Adam on 29-Mar-17
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 1729 C3

Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chlorite in Echinicola vietnamensis KMM 6221, DSM 17526

For stress Sodium Chlorite across organisms

SEED Subsystems

Subsystem #Specific
Lysine Biosynthesis DAP Pathway 1
Threonine and Homoserine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-homoserine biosynthesis 3 3 1
dipicolinate biosynthesis 4 3 1
spermidine biosynthesis II 4 2 1
L-methionine biosynthesis IV 4 2 1
ectoine biosynthesis 5 2 1
superpathway of L-threonine biosynthesis 6 6 1
norspermidine biosynthesis 6 2 1
L-lysine biosynthesis III 7 6 1
L-lysine biosynthesis VI 7 6 1
3-dehydroquinate biosynthesis II (archaea) 7 3 1
cremeomycin biosynthesis 7 2 1
superpathway of L-homoserine and L-methionine biosynthesis 8 6 1
grixazone biosynthesis 8 2 1
superpathway of polyamine biosynthesis III 8 2 1
L-lysine biosynthesis I 9 8 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 7 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 7 1
L-lysine biosynthesis II 9 7 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 10 1
chorismate biosynthesis II (archaea) 12 8 1
superpathway of L-isoleucine biosynthesis I 13 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 15 1
aspartate superpathway 25 20 1
platensimycin biosynthesis 26 6 1