Experiment set1IT040 for Pseudomonas simiae WCS417

Compare to:

Xylitol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.6 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -6.1 -3.8 3-phosphoglycerate dehydrogenase compare
PS417_00185 -6.0 -4.2 tryptophan synthase subunit beta compare
PS417_02510 -5.8 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -5.7 -6.1 3-isopropylmalate dehydratase compare
PS417_26740 -5.7 -13.7 homoserine acetyltransferase compare
PS417_04415 -5.4 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23545 -5.3 -5.2 gamma-glutamyl kinase compare
PS417_23805 -5.3 -6.3 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -5.3 -12.4 ketol-acid reductoisomerase compare
PS417_25720 -5.3 -10.3 anthranilate synthase component II compare
PS417_25725 -5.3 -20.0 anthranilate synthase component I compare
PS417_18560 -5.2 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18600 -5.1 -4.8 isopropylmalate isomerase compare
PS417_08125 -5.1 -2.2 prephenate dehydratase compare
PS417_27795 -4.9 -2.1 orotate phosphoribosyltransferase compare
PS417_01850 -4.9 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04420 -4.8 -13.2 histidinol dehydrogenase compare
PS417_12855 -4.8 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18585 -4.7 -8.5 3-isopropylmalate dehydrogenase compare
PS417_24745 -4.7 -7.1 gamma-glutamyl phosphate reductase compare
PS417_09725 -4.6 -10.9 transporter compare
PS417_01855 -4.6 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_16465 -4.5 -14.1 sirohydrochlorin ferrochelatase compare
PS417_23110 -4.4 -12.4 2-isopropylmalate synthase compare
PS417_02005 -4.4 -15.1 glutamate synthase compare
PS417_23810 -4.4 -13.0 acetolactate synthase 3 catalytic subunit compare
PS417_01565 -4.4 -6.6 imidazole glycerol phosphate synthase compare
PS417_26745 -4.3 -5.6 methionine biosynthesis protein MetW compare
PS417_12690 -4.3 -8.3 xylulose kinase compare
PS417_25715 -4.2 -5.1 anthranilate phosphoribosyltransferase compare
PS417_06375 -4.2 -1.8 deoxycytidine triphosphate deaminase compare
PS417_23995 -4.2 -1.8 preprotein translocase subunit SecG compare
PS417_18530 -3.9 -7.3 O-succinylhomoserine sulfhydrylase compare
PS417_05595 -3.9 -8.4 ornithine carbamoyltransferase compare
PS417_12290 -3.9 -10.6 sulfite reductase compare
PS417_02000 -3.9 -14.5 glutamate synthase compare
PS417_01605 -3.8 -3.7 phosphoglycerate mutase compare
PS417_17735 -3.8 -4.9 LacI family transcriptional regulator compare
PS417_20985 -3.7 -4.7 porin compare
PS417_27195 -3.6 -2.0 N-acetylglutamate synthase compare
PS417_28220 -3.5 -3.3 LysR family transcriptional regulator compare
PS417_14940 -3.5 -3.8 LysR family transcriptional regulator compare
PS417_25710 -3.5 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_02415 -3.5 -6.3 phosphoserine phosphatase compare
PS417_21035 -3.2 -14.8 multidrug transporter compare
PS417_26890 -3.0 -4.7 dihydroxy-acid dehydratase compare
PS417_26995 -3.0 -11.6 phosphoserine phosphatase compare
PS417_26730 -2.9 -2.3 pyrroline-5-carboxylate reductase compare
PS417_22690 -2.9 -6.0 phosphogluconate dehydratase compare
PS417_01580 -2.9 -2.0 imidazole glycerol phosphate synthase compare
PS417_23770 -2.8 -4.1 exodeoxyribonuclease V subunit alpha compare
PS417_17720 -2.7 -3.5 xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) conserved
PS417_26040 -2.7 -6.7 malate synthase compare
PS417_20160 -2.7 -4.4 cysteine synthase compare
PS417_08220 -2.6 -1.5 epimerase compare
PS417_01570 -2.5 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01560 -2.5 -3.0 imidazoleglycerol-phosphate dehydratase compare
PS417_20125 -2.4 -6.2 phosphoribosylglycinamide formyltransferase compare
PS417_27835 -2.4 -10.3 endoribonuclease compare
PS417_00180 -2.4 -3.4 tryptophan synthase subunit alpha compare
PS417_24155 -2.4 -3.9 ATP-binding protein compare
PS417_27435 -2.2 -9.1 polyphosphate kinase compare
PS417_20610 -2.2 -2.7 hypothetical protein compare
PS417_08245 -2.1 -1.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_17725 -2.0 -4.8 ribose ABC transporter permease compare
PS417_12695 -2.0 -6.1 mannitol dehydrogenase compare
PS417_21125 -1.9 -9.7 phosphoadenosine phosphosulfate reductase compare
PS417_19335 -1.9 -3.4 isochorismatase compare
PS417_08195 -1.9 -8.9 hypothetical protein compare
PS417_27875 -1.9 -9.9 histidine kinase compare
PS417_24835 -1.9 -6.8 hypothetical protein compare
PS417_18690 -1.9 -5.2 aromatic amino acid aminotransferase compare
PS417_08230 -1.8 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07170 -1.8 -4.9 hypothetical protein compare
PS417_12060 -1.8 -10.7 xylitol ABC transporter, permease component (from data) compare
PS417_22520 -1.8 -3.7 histidine kinase compare
PS417_22695 -1.8 -10.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08205 -1.7 -4.9 acetyltransferase compare
PS417_12040 -1.7 -9.1 dihydroxyacetone kinase compare
PS417_21750 -1.7 -13.5 acetyl-CoA synthetase compare
PS417_27035 -1.7 -6.1 FAD-linked oxidase compare
PS417_08200 -1.7 -4.4 hypothetical protein compare
PS417_27010 -1.7 -8.9 threonine dehydratase compare
PS417_12065 -1.7 -8.4 xylitol ABC transporter, ATPase component (from data) compare
PS417_06680 -1.7 -10.9 nuclease PIN compare
PS417_08225 -1.6 -6.6 acetolactate synthase compare
PS417_21655 -1.6 -2.3 aspartate kinase compare
PS417_21705 -1.5 -5.8 arginine N-succinyltransferase compare
PS417_01710 -1.5 -5.6 histidine utilization repressor compare
PS417_06200 -1.4 -4.0 protein-PII uridylyltransferase compare
PS417_24615 -1.4 -1.3 hypothetical protein compare
PS417_07620 -1.4 -2.9 beta-hexosaminidase compare
PS417_12055 -1.3 -5.7 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_12710 -1.3 -5.0 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_22445 -1.3 -4.3 ATP-dependent DNA helicase RuvB compare
PS417_11930 -1.3 -7.1 hypothetical protein compare
PS417_03925 -1.3 -6.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_22385 -1.3 -7.7 quinolinate synthase A compare
PS417_06530 -1.2 -2.7 membrane protein compare
PS417_28070 -1.2 -6.5 phosphate ABC transporter ATP-binding protein compare
PS417_26695 -1.2 -1.4 uracil phosphoribosyltransferase compare
PS417_16990 -1.2 -6.1 acyl-CoA dehydrogenase compare
PS417_23900 -1.2 -7.1 poly(A) polymerase compare
PS417_28080 -1.2 -8.6 phosphate ABC transporter permease compare
PS417_12050 -1.2 -4.5 short-chain dehydrogenase compare
PS417_09705 -1.2 -3.4 hypothetical protein compare
PS417_17645 -1.2 -2.5 RND transporter compare
PS417_08580 -1.2 -5.3 histidine kinase compare
PS417_20665 -1.2 -5.1 hypothetical protein compare
PS417_11520 -1.2 -3.2 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_27610 -1.2 -5.7 hypothetical protein compare
PS417_23375 -1.2 -2.5 cytochrome C oxidase compare
PS417_22620 -1.2 -4.4 pyruvate kinase compare
PS417_12715 -1.2 -7.0 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) compare
PS417_18445 -1.1 -3.6 glycerol-3-phosphatase compare
PS417_09710 -1.1 -2.4 dehydrogenase compare
PS417_03560 -1.1 -1.6 GTP-binding protein compare
PS417_22570 -1.1 -1.0 H-NS histone compare
PS417_23490 -1.1 -1.6 dihydrofolate reductase compare
PS417_21210 -1.1 -1.4 amidotransferase compare
PS417_05165 -1.1 -2.7 cytosol aminopeptidase compare
PS417_07470 -1.1 -1.6 hypothetical protein compare
PS417_27105 -1.1 -3.5 spermidine/putrescine ABC transporter permease compare
PS417_10995 -1.1 -2.6 GntR family transcriptional regulator compare
PS417_26510 -1.1 -6.4 5,10-methylenetetrahydrofolate reductase compare
PS417_12035 -1.0 -2.5 dihydroxyacetone kinase compare
PS417_27595 -1.0 -2.3 recombinase XerC compare
PS417_09325 -1.0 -4.8 peptidase S41 compare
PS417_25650 -1.0 -4.1 anhydro-N-acetylmuramic acid kinase compare
PS417_12310 -1.0 -6.9 methionine synthase compare
PS417_03310 -1.0 -3.6 carbonate dehydratase compare
PS417_27305 -1.0 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17240 -1.0 -3.2 trigger factor compare
PS417_08730 -1.0 -1.9 cytochrome C compare
PS417_09470 -1.0 -1.4 hypothetical protein compare
PS417_13800 -1.0 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_25790 -1.0 -2.9 aminoglycoside phosphotransferase compare
PS417_22875 -1.0 -1.9 hypothetical protein compare
PS417_22450 -1.0 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_04180 -1.0 -3.6 GntR family transcriptional regulator compare
PS417_04270 -1.0 -5.0 ribonuclease G compare
PS417_15885 -0.9 -2.3 GCN5 family acetyltransferase compare
PS417_12045 -0.9 -2.1 iditol 2-dehydrogenase compare
PS417_09720 -0.9 -1.9 methyltransferase compare
PS417_18425 -0.9 -1.5 sporulation protein compare
PS417_05840 -0.9 -3.3 LuxR family transcriptional regulator compare
PS417_15780 -0.9 -3.1 membrane protein compare
PS417_09715 -0.9 -4.1 hypothetical protein compare
PS417_10025 -0.9 -1.3 bacteriophage lambda NinG family protein compare
PS417_01095 -0.9 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_28085 -0.9 -5.7 phosphate-binding protein compare
PS417_06645 -0.9 -5.6 RNA polymerase-associated protein RapA compare
PS417_21000 -0.9 -2.1 CrfX protein compare
PS417_03935 -0.8 -3.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_00755 -0.8 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_13870 -0.8 -1.9 hypothetical protein compare
PS417_09210 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_07540 -0.8 -3.3 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_26990 -0.8 -1.1 RNA pyrophosphohydrolase compare
PS417_25225 -0.8 -2.4 MFS transporter compare
PS417_16055 -0.8 -1.8 biopolymer transporter TolR compare
PS417_12725 -0.8 -3.2 AraC family transcriptional regulator conserved
PS417_27870 -0.8 -2.4 ATP-dependent DNA helicase RecG compare
PS417_11485 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_27605 -0.8 -3.2 hypothetical protein compare
PS417_06895 -0.8 -2.4 DNA-binding protein compare
PS417_28075 -0.8 -2.7 phosphate ABC transporter permease compare
PS417_24575 -0.8 -1.2 hypothetical protein compare
PS417_00960 -0.8 -1.6 transcriptional regulator compare
PS417_21990 -0.8 -2.3 LacI family transcriptional regulator compare
PS417_20620 -0.8 -3.9 glycosyl transferase family 2 compare
PS417_06245 -0.8 -1.9 zinc metallopeptidase RseP compare
PS417_13795 -0.7 -5.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_08990 -0.7 -2.0 ABC transporter substrate-binding protein compare
PS417_28510 -0.7 -3.8 chromosome partitioning protein compare
PS417_27535 -0.7 -4.8 chemotaxis protein CheY compare
PS417_24810 -0.7 -4.9 aldehyde dehydrogenase compare
PS417_24705 -0.7 -3.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_08045 -0.7 -1.2 uracil permease compare
PS417_08320 -0.7 -1.4 metal-chelation protein CHAD compare
PS417_02225 -0.7 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_20535 -0.7 -3.5 peptidylprolyl isomerase compare
PS417_12700 -0.7 -2.3 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_16490 -0.7 -1.3 cell division protein FtsK compare
PS417_27585 -0.7 -2.0 diaminopimelate epimerase compare
PS417_18435 -0.7 -2.2 hypothetical protein compare
PS417_10815 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_08155 -0.7 -1.5 integration host factor subunit beta compare
PS417_06835 -0.7 -2.3 phospholipase compare
PS417_04375 -0.7 -1.9 ABC transporter ATP-binding protein compare
PS417_04380 -0.7 -1.4 ABC transporter permease compare
PS417_05120 -0.7 -1.7 RNA polymerase subunit sigma-24 compare
PS417_17215 -0.7 -2.7 peptidylprolyl isomerase compare
PS417_27180 -0.7 -1.2 peroxidase compare
PS417_08685 -0.7 -1.5 flagellar hook-length control protein FliK compare
PS417_21870 -0.7 -1.6 glycerophosphodiester phosphodiesterase compare
PS417_21480 -0.7 -1.2 23S rRNA pseudouridylate synthase compare
PS417_03550 -0.7 -1.6 hypothetical protein compare
PS417_21425 -0.7 -1.0 4-amino-4-deoxychorismate lyase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Xylitol in Pseudomonas simiae WCS417

For carbon source Xylitol across organisms