Experiment set1IT040 for Variovorax sp. OAS795

Compare to:

L-Phenylalanine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS15380 -8.6 -5.9 nitrite/sulfite reductase compare
ABID97_RS16595 -8.0 -5.6 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -7.1 -7.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS25355 -7.0 -12.6 Lrp/AsnC family transcriptional regulator conserved
ABID97_RS09045 -6.8 -6.5 SDR family oxidoreductase compare
ABID97_RS07405 -6.7 -12.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS16600 -6.6 -4.6 CysB family HTH-type transcriptional regulator compare
ABID97_RS25370 -6.4 -18.4 phenylalanine 4-monooxygenase conserved
ABID97_RS25360 -6.2 -20.6 4-hydroxyphenylpyruvate dioxygenase conserved
ABID97_RS01910 -6.1 -12.3 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS06515 -6.0 -9.1 SDR family oxidoreductase compare
ABID97_RS01905 -5.7 -7.9 PDR/VanB family oxidoreductase compare
ABID97_RS03955 -5.5 -13.3 fumarylacetoacetase compare
ABID97_RS01565 -5.4 -10.9 DNA starvation/stationary phase protection protein compare
ABID97_RS01955 -5.4 -7.4 FadR/GntR family transcriptional regulator compare
ABID97_RS17310 -5.3 -7.3 PLP-dependent aminotransferase family protein compare
ABID97_RS07410 -5.2 -6.5 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS16910 -5.0 -10.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS08780 -4.9 -6.4 4a-hydroxytetrahydrobiopterin dehydratase compare
ABID97_RS10885 -4.8 -3.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS22620 -4.6 -8.2 response regulator transcription factor compare
ABID97_RS12400 -4.6 -3.7 maleylacetoacetate isomerase compare
ABID97_RS05260 -4.6 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS08425 -4.6 -3.1 tryptophan synthase subunit alpha compare
ABID97_RS17895 -4.5 -9.3 transcriptional regulator NrdR compare
ABID97_RS05250 -4.5 -3.1 anthranilate synthase component I compare
ABID97_RS07430 -4.5 -9.9 pantoate--beta-alanine ligase compare
ABID97_RS06575 -4.5 -8.0 trehalose-phosphatase compare
ABID97_RS07000 -4.4 -8.9 threonine ammonia-lyase, biosynthetic compare
ABID97_RS10105 -4.4 -4.6 CBS domain-containing protein compare
ABID97_RS22625 -4.2 -14.0 HAMP domain-containing sensor histidine kinase compare
ABID97_RS07415 -4.0 -15.3 quinolinate synthase NadA compare
ABID97_RS24170 -4.0 -6.0 ATP-binding protein compare
ABID97_RS16535 -3.9 -8.4 arginine/lysine/ornithine decarboxylase compare
ABID97_RS17590 -3.9 -15.2 endopeptidase La compare
ABID97_RS13990 -3.8 -2.6 amino acid aminotransferase compare
ABID97_RS25015 -3.7 -3.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS06345 -3.6 -2.5 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS09180 -3.6 -4.9 DNA polymerase I compare
ABID97_RS07440 -3.6 -12.0 L-aspartate oxidase compare
ABID97_RS07435 -3.6 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS02600 -3.6 -2.5 homoserine O-acetyltransferase compare
ABID97_RS11115 -3.6 -14.2 isocitrate lyase compare
ABID97_RS07855 -3.5 -4.0 ABC transporter ATP-binding protein compare
ABID97_RS04855 -3.4 -3.8 CinA family protein compare
ABID97_RS24055 -3.3 -2.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS23455 -3.3 -2.3 hypothetical protein compare
ABID97_RS28990 -3.2 -7.4 aspartate 1-decarboxylase compare
ABID97_RS07840 -3.2 -11.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS05275 -3.1 -2.1 anthranilate phosphoribosyltransferase compare
ABID97_RS03415 -3.1 -5.0 histidine utilization repressor compare
ABID97_RS10705 -3.1 -4.7 H-NS histone family protein compare
ABID97_RS03805 -2.9 -1.6 ATP-binding protein compare
ABID97_RS21150 -2.9 -11.0 FAD-dependent oxidoreductase compare
ABID97_RS07850 -2.8 -7.4 ABC transporter ATP-binding protein compare
ABID97_RS07845 -2.8 -8.5 ABC transporter ATP-binding protein compare
ABID97_RS23450 -2.8 -4.6 MBOAT family protein compare
ABID97_RS25365 -2.8 -6.6 transporter substrate-binding domain-containing protein compare
ABID97_RS17360 -2.7 -2.6 alpha/beta hydrolase compare
ABID97_RS06275 -2.7 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS16565 -2.7 -10.7 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS14975 -2.7 -3.9 hypothetical protein compare
ABID97_RS05820 -2.6 -6.8 FadR/GntR family transcriptional regulator compare
ABID97_RS12180 -2.6 -2.5 hypothetical protein compare
ABID97_RS12610 -2.6 -3.3 flavoprotein compare
ABID97_RS06160 -2.5 -8.1 GTP-binding protein compare
ABID97_RS03960 -2.5 -6.3 homogentisate 1,2-dioxygenase compare
ABID97_RS08435 -2.5 -1.7 phosphoribosylanthranilate isomerase compare
ABID97_RS13860 -2.5 -8.4 hypothetical protein compare
ABID97_RS05280 -2.5 -1.7 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03910 -2.4 -1.7 orotate phosphoribosyltransferase compare
ABID97_RS05755 -2.4 -2.3 glycosyltransferase compare
ABID97_RS19440 -2.4 -3.8 CoA transferase subunit A compare
ABID97_RS13450 -2.4 -3.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS19065 -2.4 -6.7 GntR family transcriptional regulator compare
ABID97_RS15375 -2.4 -3.1 DUF934 domain-containing protein compare
ABID97_RS05765 -2.4 -1.6 UDP-glucose 4-epimerase GalE compare
ABID97_RS04605 -2.3 -11.9 glutamate--cysteine ligase compare
ABID97_RS02215 -2.3 -15.2 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS02420 -2.3 -5.5 protealysin inhibitor emfourin compare
ABID97_RS04500 -2.2 -1.5 HPr(Ser) kinase/phosphatase compare
ABID97_RS17850 -2.2 -1.1 tetratricopeptide repeat protein compare
ABID97_RS09130 -2.2 -1.2 tRNA-Ala compare
ABID97_RS08240 -2.2 -2.4 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS08765 -2.2 -5.5 CobD/CbiB family protein compare
ABID97_RS20265 -2.2 -3.5 site-specific tyrosine recombinase XerD compare
ABID97_RS25525 -2.1 -4.8 LacI family DNA-binding transcriptional regulator compare
ABID97_RS03800 -2.1 -2.5 O-antigen ligase family protein compare
ABID97_RS10355 -2.1 -9.0 FadR/GntR family transcriptional regulator compare
ABID97_RS14925 -2.1 -9.5 arginyltransferase compare
ABID97_RS14665 -2.1 -3.1 UvrD-helicase domain-containing protein compare
ABID97_RS10720 -2.0 -4.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS17200 -2.0 -13.6 ribonuclease R compare
ABID97_RS10695 -2.0 -7.4 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS15665 -2.0 -7.7 [protein-PII] uridylyltransferase compare
ABID97_RS03125 -2.0 -7.4 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS08710 -1.9 -5.7 polynucleotide adenylyltransferase PcnB compare
ABID97_RS06150 -1.9 -6.1 tyrosine recombinase XerC compare
ABID97_RS17600 -1.9 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS23425 -1.9 -2.0 tRNA-Pro compare
ABID97_RS06460 -1.9 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS10590 -1.8 -11.1 nicotinate phosphoribosyltransferase compare
ABID97_RS23635 -1.8 -10.1 non-canonical purine NTP pyrophosphatase compare
ABID97_RS08480 -1.8 -1.2 citrate synthase compare
ABID97_RS16985 -1.8 -2.8 transcriptional repressor LexA compare
ABID97_RS14985 -1.7 -1.6 hypothetical protein compare
ABID97_RS01890 -1.7 -3.5 FAD-binding oxidoreductase compare
ABID97_RS21170 -1.7 -4.3 DEAD/DEAH box helicase compare
ABID97_RS23695 -1.7 -10.3 heat-inducible transcriptional repressor HrcA compare
ABID97_RS23225 -1.7 -12.1 glutamate synthase-related protein compare
ABID97_RS16920 -1.7 -9.8 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS05670 -1.7 -1.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS14095 -1.7 -7.8 PAS domain S-box protein compare
ABID97_RS13155 -1.7 -3.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS13245 -1.6 -1.3 XRE family transcriptional regulator compare
ABID97_RS16705 -1.6 -9.0 ribonuclease G compare
ABID97_RS19380 -1.6 -3.3 2-methylcitrate synthase compare
ABID97_RS10685 -1.6 -5.4 hypothetical protein compare
ABID97_RS14850 -1.6 -3.8 P-II family nitrogen regulator compare
ABID97_RS16690 -1.6 -4.1 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS24920 -1.6 -1.5 Holliday junction branch migration protein RuvA compare
ABID97_RS10690 -1.6 -7.0 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS02010 -1.6 -4.0 hypothetical protein compare
ABID97_RS14625 -1.6 -3.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS01650 -1.6 -1.1 orotidine-5'-phosphate decarboxylase compare
ABID97_RS23915 -1.6 -3.6 heme o synthase compare
ABID97_RS06190 -1.6 -5.5 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS16290 -1.6 -5.9 protein-glutamate O-methyltransferase CheR compare
ABID97_RS27140 -1.5 -1.7 winged helix-turn-helix domain-containing protein compare
ABID97_RS08440 -1.5 -6.1 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS08220 -1.5 -7.9 phosphoenolpyruvate carboxylase compare
ABID97_RS06140 -1.5 -1.7 DUF484 family protein compare
ABID97_RS27720 -1.5 -1.5 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS27795 -1.5 -1.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS05750 -1.5 -2.3 glycosyltransferase compare
ABID97_RS27195 -1.5 -1.5 hypothetical protein compare
ABID97_RS08430 -1.5 -1.4 tryptophan synthase subunit beta compare
ABID97_RS00260 -1.4 -5.9 PilT/PilU family type 4a pilus ATPase compare
ABID97_RS02455 -1.4 -3.8 nucleotidyltransferase family protein compare
ABID97_RS04760 -1.4 -1.6 SPOR domain-containing protein compare
ABID97_RS00080 -1.4 -6.4 DUF3567 domain-containing protein compare
ABID97_RS08445 -1.4 -8.8 FimV/HubP family polar landmark protein compare
ABID97_RS16560 -1.4 -8.6 response regulator compare
ABID97_RS16470 -1.4 -1.5 translational GTPase TypA compare
ABID97_RS14160 -1.4 -5.4 cell division protein ZapE compare
ABID97_RS12150 -1.4 -3.1 hypothetical protein compare
ABID97_RS27370 -1.3 -1.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS19385 -1.3 -4.4 short-chain fatty acyl-CoA regulator family protein compare
ABID97_RS06450 -1.3 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS23645 -1.3 -2.0 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS10710 -1.3 -6.7 NADPH:quinone oxidoreductase family protein compare
ABID97_RS07500 -1.3 -1.9 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS19025 -1.3 -0.8 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS25305 -1.3 -5.7 NAD(P)H-dependent oxidoreductase compare
ABID97_RS03675 -1.2 -4.1 DMT family transporter compare
ABID97_RS14255 -1.2 -5.1 GTPase HflX compare
ABID97_RS13865 -1.2 -3.6 hypothetical protein compare
ABID97_RS02275 -1.2 -4.4 recombinase RecA compare
ABID97_RS05370 -1.2 -4.0 ATP-binding protein compare
ABID97_RS03970 -1.2 -7.6 FAD-dependent oxidoreductase compare
ABID97_RS24510 -1.2 -1.0 cytidylate kinase family protein compare
ABID97_RS11545 -1.2 -1.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS10680 -1.2 -5.2 histidine phosphatase family protein compare
ABID97_RS23220 -1.2 -1.5 glutamate synthase subunit beta compare
ABID97_RS23330 -1.2 -5.3 c-type cytochrome compare
ABID97_RS13025 -1.2 -0.9 helix-turn-helix domain-containing protein compare
ABID97_RS07870 -1.2 -6.8 SDR family oxidoreductase compare
ABID97_RS23940 -1.2 -4.5 cytochrome c oxidase subunit 3 compare
ABID97_RS21910 -1.2 -6.3 hypothetical protein compare
ABID97_RS19375 -1.1 -3.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS09595 -1.1 -1.0 Arc family DNA-binding protein compare
ABID97_RS22790 -1.1 -1.8 1,2-phenylacetyl-CoA epoxidase subunit PaaB compare
ABID97_RS11525 -1.1 -1.4 enolase C-terminal domain-like protein compare
ABID97_RS22235 -1.1 -2.5 amino acid ABC transporter substrate-binding protein compare
ABID97_RS10870 -1.1 -9.4 PhoH family protein compare
ABID97_RS26150 -1.1 -4.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS09490 -1.1 -1.1 LapA family protein compare
ABID97_RS14700 -1.1 -1.6 recombination mediator RecR compare
ABID97_RS01120 -1.1 -0.8 citrate synthase compare
ABID97_RS17595 -1.1 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS08330 -1.1 -7.2 RNA polymerase sigma factor RpoE compare
ABID97_RS10210 -1.0 -0.9 TfoX/Sxy family protein compare
ABID97_RS27170 -1.0 -1.4 hypothetical protein compare
ABID97_RS22160 -1.0 -2.8 hypothetical protein compare
ABID97_RS00745 -1.0 -4.6 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS02850 -1.0 -4.0 response regulator transcription factor compare
ABID97_RS22135 -1.0 -0.8 LysR family transcriptional regulator compare
ABID97_RS18770 -1.0 -1.7 FAD-dependent oxidoreductase compare
ABID97_RS20610 -1.0 -3.6 DNA-binding protein YbiB compare
ABID97_RS15490 -1.0 -4.7 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS23485 -1.0 -1.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS29150 -1.0 -2.1 maleylacetate reductase compare
ABID97_RS23950 -1.0 -5.4 cytochrome c oxidase assembly protein compare
ABID97_RS01885 -1.0 -4.1 ABC transporter permease compare
ABID97_RS24040 -1.0 -1.6 MarR family transcriptional regulator compare
ABID97_RS20095 -1.0 -1.4 DNA topoisomerase IV subunit B compare
ABID97_RS20000 -1.0 -4.2 circularly permuted type 2 ATP-grasp protein compare
ABID97_RS10730 -1.0 -5.3 sigma-70 family RNA polymerase sigma factor compare
ABID97_RS03270 -1.0 -2.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24060 -1.0 -0.9 VOC family protein compare


Specific Phenotypes

For 25 genes in this experiment

For carbon source L-Phenylalanine in Variovorax sp. OAS795

For carbon source L-Phenylalanine across organisms