Experiment set1IT040 for Rhizobium sp. OAE497

Compare to:

Glycolic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS18590 -6.8 -6.7 homoserine O-succinyltransferase compare
ABIE40_RS02340 -6.4 -9.7 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS19415 -6.3 -12.8 phosphoenolpyruvate carboxykinase compare
ABIE40_RS00245 -6.3 -8.6 prephenate dehydratase compare
ABIE40_RS17525 -6.2 -3.5 lipoprotein compare
ABIE40_RS18380 -6.1 -12.9 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS11950 -6.0 -7.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS09660 -6.0 -8.2 AI-2E family transporter compare
ABIE40_RS18775 -5.9 -9.1 pyruvate carboxylase compare
ABIE40_RS19040 -5.9 -5.8 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS13330 -5.9 -9.0 2-isopropylmalate synthase compare
ABIE40_RS19050 -5.8 -11.1 3-isopropylmalate dehydrogenase compare
ABIE40_RS09095 -5.7 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS06555 -5.6 -3.2 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS13130 -5.5 -11.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS17530 -5.4 -3.7 diaminopimelate decarboxylase compare
ABIE40_RS16645 -5.4 -20.2 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS08635 -5.3 -6.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS16320 -5.3 -3.7 histidinol-phosphatase compare
ABIE40_RS03665 -5.3 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS02725 -5.2 -3.6 histidinol dehydrogenase compare
ABIE40_RS01970 -5.2 -3.6 acetylglutamate kinase compare
ABIE40_RS20460 -5.2 -3.6 precorrin-3B synthase compare
ABIE40_RS00235 -5.1 -6.6 cytochrome c family protein compare
ABIE40_RS19435 -5.1 -2.9 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS19460 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS10720 -4.9 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS18300 -4.8 -9.2 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS18290 -4.8 -14.7 heme ABC transporter permease compare
ABIE40_RS11150 -4.8 -7.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS19440 -4.8 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS19330 -4.7 -3.3 phosphoribosylanthranilate isomerase compare
ABIE40_RS09725 -4.7 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS11175 -4.7 -3.2 cobyric acid synthase compare
ABIE40_RS13120 -4.7 -10.4 cytochrome c1 compare
ABIE40_RS04080 -4.7 -14.0 cytochrome c oxidase assembly protein compare
ABIE40_RS05685 -4.7 -14.0 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS17650 -4.6 -3.2 cobaltochelatase subunit CobS compare
ABIE40_RS12360 -4.6 -14.1 DUF5131 family protein compare
ABIE40_RS13410 -4.6 -3.2 anthranilate synthase compare
ABIE40_RS20440 -4.6 -3.2 cobalt-precorrin-6A reductase compare
ABIE40_RS17515 -4.6 -8.8 TlpA disulfide reductase family protein compare
ABIE40_RS03555 -4.6 -14.9 FAD-linked oxidase C-terminal domain-containing protein compare
ABIE40_RS02325 -4.6 -5.4 ornithine carbamoyltransferase compare
ABIE40_RS16070 -4.5 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS20435 -4.5 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS06930 -4.5 -4.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS20905 -4.5 -7.8 IclR family transcriptional regulator compare
ABIE40_RS11165 -4.5 -3.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS05680 -4.5 -9.9 cytochrome c maturation protein CcmE compare
ABIE40_RS11495 -4.4 -3.1 acetolactate synthase 3 large subunit compare
ABIE40_RS10345 -4.4 -4.3 RNA polymerase-binding protein DksA compare
ABIE40_RS17595 -4.4 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS19450 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS09360 -4.4 -4.2 excinuclease ABC subunit UvrA compare
ABIE40_RS04065 -4.3 -14.5 cytochrome c oxidase subunit I compare
ABIE40_RS00725 -4.3 -3.0 DNA cytosine methyltransferase compare
ABIE40_RS11155 -4.3 -3.0 cobaltochelatase subunit CobN compare
ABIE40_RS06270 -4.3 -7.1 amidophosphoribosyltransferase compare
ABIE40_RS20455 -4.2 -2.4 precorrin-8X methylmutase compare
ABIE40_RS20450 -4.2 -4.1 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS03560 -4.2 -11.5 FAD-binding protein compare
ABIE40_RS19130 -4.2 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20430 -4.2 -2.9 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS09545 -4.1 -3.4 anthranilate phosphoribosyltransferase compare
ABIE40_RS10180 -4.1 -5.5 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS20465 -4.1 -2.8 precorrin-6A synthase (deacetylating) compare
ABIE40_RS06915 -4.0 -14.8 COX15/CtaA family protein compare
ABIE40_RS18280 -4.0 -4.8 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS18285 -4.0 -7.7 heme exporter protein CcmB compare
ABIE40_RS03405 -4.0 -2.7 anti-sigma factor compare
ABIE40_RS14985 -4.0 -2.5 glycosyltransferase compare
ABIE40_RS19445 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS08005 -3.9 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS06560 -3.9 -6.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS17645 -3.9 -2.7 cobaltochelatase subunit CobT compare
ABIE40_RS11095 -3.8 -5.2 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS00930 -3.8 -7.3 ABC transporter permease compare
ABIE40_RS19355 -3.8 -3.0 thioredoxin compare
ABIE40_RS12135 -3.8 -2.6 methionine synthase compare
ABIE40_RS09155 -3.8 -5.3 DUF934 domain-containing protein compare
ABIE40_RS03565 -3.8 -17.3 glycolate oxidase subunit GlcF conserved
ABIE40_RS13125 -3.8 -17.1 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS10390 -3.8 -2.6 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS06730 -3.8 -6.7 riboflavin synthase compare
ABIE40_RS20025 -3.7 -6.0 alpha-hydroxy acid oxidase compare
ABIE40_RS09150 -3.7 -15.2 nitrite/sulfite reductase compare
ABIE40_RS04085 -3.7 -12.1 cytochrome c oxidase subunit 3 compare
ABIE40_RS18720 -3.6 -2.5 polyprenyl synthetase family protein compare
ABIE40_RS08425 -3.6 -3.4 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS11020 -3.6 -11.1 substrate-binding domain-containing protein compare
ABIE40_RS05545 -3.6 -3.3 Dabb family protein compare
ABIE40_RS24310 -3.6 -10.4 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS05430 -3.6 -2.4 phosphoribosylamine--glycine ligase compare
ABIE40_RS04060 -3.5 -14.1 cytochrome c oxidase subunit II compare
ABIE40_RS09170 -3.5 -6.1 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS17590 -3.5 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS15920 -3.5 -1.1 50S ribosomal protein L31 compare
ABIE40_RS00490 -3.5 -11.6 DNA polymerase I compare
ABIE40_RS16655 -3.4 -6.6 creatininase family protein compare
ABIE40_RS14990 -3.4 -13.0 glycosyltransferase family 2 protein compare
ABIE40_RS26890 -3.4 -2.7 DUF983 domain-containing protein compare
ABIE40_RS14850 -3.4 -12.5 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS00580 -3.4 -3.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS10155 -3.3 -2.1 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS00935 -3.3 -6.7 ABC transporter substrate-binding protein compare
ABIE40_RS20445 -3.3 -1.5 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS18925 -3.2 -7.2 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS18055 -3.2 -4.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS10200 -3.1 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS09060 -3.1 -5.9 type II toxin-antitoxin system RatA family toxin compare
ABIE40_RS11060 -3.1 -5.8 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS19260 -3.1 -3.0 DNA polymerase III subunit epsilon compare
ABIE40_RS02320 -3.1 -6.7 aspartate aminotransferase family protein compare
ABIE40_RS19700 -3.1 -3.0 MBL fold metallo-hydrolase compare
ABIE40_RS05690 -3.1 -4.8 cytochrome c-type biogenesis protein compare
ABIE40_RS15855 -3.0 -3.5 cell division protein ZapA compare
ABIE40_RS17020 -3.0 -7.2 sugar-binding transcriptional regulator compare
ABIE40_RS06720 -3.0 -2.5 transcriptional regulator NrdR compare
ABIE40_RS06050 -2.9 -6.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS19480 -2.9 -3.4 DUF1402 family protein compare
ABIE40_RS08935 -2.9 -3.6 RIP metalloprotease RseP compare
ABIE40_RS05665 -2.9 -4.0 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS18920 -2.8 -5.6 glutamate 5-kinase compare
ABIE40_RS18685 -2.8 -4.3 beta-ketoacyl-ACP reductase compare
ABIE40_RS00960 -2.8 -4.6 formyltetrahydrofolate deformylase compare
ABIE40_RS09720 -2.7 -4.4 GTP cyclohydrolase I FolE compare
ABIE40_RS14855 -2.7 -8.2 NAD-dependent epimerase compare
ABIE40_RS16170 -2.7 -3.6 DUF882 domain-containing protein compare
ABIE40_RS04070 -2.7 -5.8 heme o synthase compare
ABIE40_RS06725 -2.6 -5.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS19395 -2.6 -2.5 PTS sugar transporter subunit IIA compare
ABIE40_RS14955 -2.5 -7.6 sugar transferase compare
ABIE40_RS01355 -2.5 -9.0 phospholipid N-methyltransferase PmtA compare
ABIE40_RS09090 -2.5 -7.3 nitrogen regulation protein NR(I) compare
ABIE40_RS04115 -2.5 -1.8 ribonuclease HI compare
ABIE40_RS18880 -2.4 -11.1 UDP-glucose 4-epimerase GalE compare
ABIE40_RS11960 -2.4 -1.6 energy-dependent translational throttle protein EttA compare
ABIE40_RS25740 -2.3 -8.6 FadR/GntR family transcriptional regulator compare
ABIE40_RS12845 -2.3 -2.5 glycosyltransferase family 4 protein compare
ABIE40_RS09140 -2.3 -6.9 siroheme synthase CysG compare
ABIE40_RS22300 -2.3 -5.2 superoxide dismutase compare
ABIE40_RS14455 -2.3 -3.2 NepR family anti-sigma factor compare
ABIE40_RS02075 -2.2 -10.6 ROK family transcriptional regulator compare
ABIE40_RS03485 -2.2 -11.7 MAPEG family protein compare
ABIE40_RS08140 -2.2 -11.6 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS07105 -2.2 -2.8 DNA-binding protein HupB compare
ABIE40_RS07270 -2.1 -7.3 DUF1467 family protein compare
ABIE40_RS02405 -2.1 -3.2 response regulator transcription factor compare
ABIE40_RS24380 -2.1 -10.0 FGGY-family carbohydrate kinase compare
ABIE40_RS30700 -2.1 -1.2 hypothetical protein compare
ABIE40_RS08970 -2.1 -8.6 citrate synthase compare
ABIE40_RS03515 -2.0 -3.0 glutamate--cysteine ligase compare
ABIE40_RS09085 -2.0 -4.2 nitrogen regulation protein NR(II) compare
ABIE40_RS01930 -2.0 -1.9 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS06700 -1.9 -3.1 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS05660 -1.9 -2.6 response regulator transcription factor compare
ABIE40_RS18735 -1.9 -4.2 TetR/AcrR family transcriptional regulator compare
ABIE40_RS08645 -1.9 -6.3 LL-diaminopimelate aminotransferase compare
ABIE40_RS22725 -1.9 -6.1 anti-sigma factor compare
ABIE40_RS03250 -1.9 -1.8 hypothetical protein compare
ABIE40_RS15730 -1.8 -3.3 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS12925 -1.8 -8.5 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS24355 -1.8 -5.2 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS05995 -1.7 -7.9 MurR/RpiR family transcriptional regulator compare
ABIE40_RS00925 -1.7 -3.2 ABC transporter permease compare
ABIE40_RS15560 -1.7 -4.8 phosphoglycerate dehydrogenase compare
ABIE40_RS14980 -1.7 -3.7 glycoside hydrolase family 16 protein compare
ABIE40_RS09980 -1.6 -2.3 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS03340 -1.6 -4.5 iron-responsive transcriptional regulator RirA compare
ABIE40_RS20315 -1.6 -1.2 type II toxin-antitoxin system VapB family antitoxin compare
ABIE40_RS23250 -1.6 -7.6 hypothetical protein compare
ABIE40_RS09540 -1.6 -4.4 peptidylprolyl isomerase compare
ABIE40_RS03735 -1.6 -2.5 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein compare
ABIE40_RS01765 -1.6 -4.1 [protein-PII] uridylyltransferase compare
ABIE40_RS30315 -1.6 -1.4 hypothetical protein compare
ABIE40_RS18640 -1.6 -6.5 M48 family metalloprotease compare
ABIE40_RS28420 -1.6 -1.8 30S ribosomal protein S21 compare
ABIE40_RS19615 -1.5 -1.7 DUF1109 domain-containing protein compare
ABIE40_RS06145 -1.5 -4.4 folate-binding protein YgfZ compare
ABIE40_RS29390 -1.5 -1.0 hypothetical protein compare
ABIE40_RS28815 -1.5 -4.9 GNAT family N-acetyltransferase compare
ABIE40_RS09800 -1.5 -4.7 MerR family DNA-binding transcriptional regulator compare
ABIE40_RS21985 -1.5 -4.5 MarR family transcriptional regulator compare
ABIE40_RS11365 -1.5 -5.0 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
ABIE40_RS04465 -1.5 -8.5 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS18970 -1.5 -2.8 murein hydrolase activator EnvC compare
ABIE40_RS10590 -1.4 -2.0 hypothetical protein compare
ABIE40_RS16660 -1.4 -2.3 GTP-binding protein compare
ABIE40_RS22665 -1.4 -2.5 class 1b ribonucleoside-diphosphate reductase subunit beta compare
ABIE40_RS19385 -1.4 -4.3 adenosylhomocysteinase compare
ABIE40_RS02305 -1.4 -3.7 phosphate signaling complex protein PhoU compare
ABIE40_RS19365 -1.4 -2.1 double-strand break repair protein AddB compare
ABIE40_RS27395 -1.4 -1.2 hypothetical protein compare
ABIE40_RS01135 -1.4 -0.8 50S ribosomal protein L20 compare
ABIE40_RS05670 -1.4 -4.5 membrane protein compare
ABIE40_RS25500 -1.4 -1.1 type II toxin-antitoxin system ParD family antitoxin compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Glycolic Acid in Rhizobium sp. OAE497

For carbon source Glycolic Acid across organisms