Experiment set1IT040 for Escherichia coli BW25113

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Sodium succinate dibasic hexahydrate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
b4124 dcuR -4.0 -16.0 DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) compare
b4125 dcuS -4.0 -13.4 sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) compare
b3232 yhcM -3.7 -12.5 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) conserved
b3528 dctA -3.6 -15.7 C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) conserved
b0390 aroM -3.1 -11.6 hypothetical protein (NCBI) compare
b2587 kgtP -3.0 -9.4 alpha-ketoglutarate transporter (NCBI) compare
b1479 sfcA -2.8 -6.6 NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) compare
b0484 copA -2.1 -12.7 copper transporter (NCBI) compare
b3423 glpR -2.1 -10.5 DNA-binding transcriptional repressor (NCBI) compare
b3403 pck -2.0 -7.6 phosphoenolpyruvate carboxykinase (NCBI) conserved
b0775 bioB -2.0 -6.1 biotin synthase (NCBI) compare
b0223 yafJ -1.9 -8.4 predicted amidotransfease (NCBI) compare
b1854 pykA -1.8 -7.5 pyruvate kinase (NCBI) conserved
b1612 fumA -1.7 -5.0 fumarate hydratase (fumarase A), aerobic Class I (NCBI) compare
b3601 mtlR -1.6 -5.6 DNA-binding repressor (NCBI) compare
b3412 bioH -1.6 -7.5 carboxylesterase of pimeloyl-CoA synthesis (NCBI) compare
b0776 bioF -1.5 -5.1 8-amino-7-oxononanoate synthase (NCBI) compare
b2151 galS -1.4 -5.4 DNA-binding transcriptional repressor (NCBI) conserved
b0774 bioA -1.4 -5.5 adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) conserved
b0777 bioC -1.3 -5.1 predicted methltransferase, enzyme of biotin synthesis (NCBI) compare
b3934 cytR -1.3 -5.4 DNA-binding transcriptional dual regulator (NCBI) compare
b3675 yidG -1.3 -6.2 predicted inner membrane protein (NCBI) compare
b4054 tyrB -1.1 -7.0 tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) compare
b1201 b1201 +1.1 6.0 putative sensor-type regulator (VIMSS) compare
b1200 b1200 +1.2 6.6 putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) compare
b3248 yhdE +1.4 5.3 Maf-like protein (NCBI) compare
b3926 glpK +1.4 11.8 glycerol kinase (NCBI) compare
b1198 dhaM +1.5 5.5 fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) compare
b3260 dusB +1.5 6.6 tRNA-dihydrouridine synthase B (NCBI) compare
b3157 yhbT +1.6 5.5 predicted lipid carrier protein (NCBI) compare
b1422 ydcI +1.7 11.7 putative transcriptional regulator LYSR-type (VIMSS) compare
b3740 gidB +1.7 12.8 glucose-inhibited division protein B (NCBI) compare
b0382 yaiB +2.3 17.0 hypothetical protein (NCBI) compare
b3752 rbsK +2.5 10.8 ribokinase (NCBI) compare


Specific phenotypes for carbon source Sodium succinate dibasic hexahydrate across organisms