Experiment set1IT039 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Thallium(I) acetate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PfGW456L13_654 -4.3 -5.6 Chaperone protein YscY (Yop proteins translocation protein Y) compare
PfGW456L13_773 -4.0 -6.7 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_2385 -3.4 -3.9 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_367 -3.0 -4.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
PfGW456L13_1972 -2.6 -3.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_2632 -2.5 -3.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_144 -2.5 -6.3 3'-to-5' exoribonuclease RNase R compare
PfGW456L13_3535 -2.3 -2.9 membrane protein, putative compare
PfGW456L13_772 -2.0 -6.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_4859 -2.0 -4.4 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_4668 -1.9 -6.1 RecA protein compare
PfGW456L13_1824 -1.8 -3.1 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_854 -1.8 -3.8 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_2297 -1.6 -3.6 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
PfGW456L13_4165 -1.6 -4.1 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_5006 -1.6 -2.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_1735 -1.5 -3.3 Glycerol uptake facilitator protein compare
PfGW456L13_875 -1.5 -6.6 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_4863 -1.5 -2.9 FIG021952: putative membrane protein compare
PfGW456L13_751 -1.4 -3.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_1625 -1.4 -1.7 FIG00958649: hypothetical protein compare
PfGW456L13_5150 -1.3 -2.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_953 -1.3 -8.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
PfGW456L13_656 -1.3 -3.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_4042 -1.3 -2.4 FIG00953628: hypothetical protein compare
PfGW456L13_2330 -1.2 -3.6 Demethylmenaquinone methyltransferase compare
PfGW456L13_5048 -1.2 -2.7 Dna binding response regulator PrrA (RegA) compare
PfGW456L13_787 -1.2 -6.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
PfGW456L13_3398 -1.2 -4.1 Transcriptional regulator, TetR family compare
PfGW456L13_275 -1.2 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_5003 -1.1 -1.6 YrbA protein compare
PfGW456L13_864 -1.1 -4.0 hypothetical protein compare
PfGW456L13_3427 -1.1 -2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
PfGW456L13_3179 -1.1 -3.2 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_1236 -1.1 -7.1 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_5008 -1.1 -1.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_4607 -1.0 -2.2 hypothetical protein compare
PfGW456L13_276 -1.0 -1.5 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_1440 -1.0 -4.8 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) conserved
PfGW456L13_5105 -1.0 -2.3 hypothetical protein compare
PfGW456L13_594 -1.0 -3.9 DNA polymerase I (EC 2.7.7.7) compare
PfGW456L13_4012 -1.0 -1.8 VacJ-like lipoprotein precursor compare
PfGW456L13_1238 -1.0 -3.2 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
PfGW456L13_2556 -1.0 -2.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_1233 -1.0 -2.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_2623 -1.0 -1.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_845 -1.0 -4.7 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_605 -0.9 -1.1 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
PfGW456L13_4377 -0.9 -3.4 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
PfGW456L13_2694 -0.9 -3.6 FIG01058644: hypothetical protein compare
PfGW456L13_1853 -0.9 -1.7 Holliday junction DNA helicase RuvB compare
PfGW456L13_5005 -0.9 -2.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_1655 -0.9 -1.3 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_2651 -0.9 -3.2 Cell division protein FtsK compare
PfGW456L13_1916 -0.9 -1.8 hypothetical protein compare
PfGW456L13_2436 -0.9 -3.4 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_3905 -0.9 -1.7 hypothetical protein compare
PfGW456L13_1854 -0.9 -1.4 4-hydroxybenzoyl-CoA thioesterase family active site compare
PfGW456L13_2936 -0.9 -5.7 Protein rarD compare
PfGW456L13_4218 -0.8 -1.9 Quaternary ammonium compound-resistance protein SugE compare
PfGW456L13_1363 -0.8 -3.0 Rare lipoprotein A precursor compare
PfGW456L13_4961 -0.8 -4.4 Fumarylacetoacetase (EC 3.7.1.2) compare
PfGW456L13_4033 -0.8 -1.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
PfGW456L13_1312 -0.8 -3.1 Ribonucleotide reductase transcriptional regulator NrdR compare
PfGW456L13_2581 -0.8 -2.0 Transmembrane regulator protein PrtR compare
PfGW456L13_5074 -0.8 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
PfGW456L13_125 -0.8 -1.1 hypothetical protein compare
PfGW456L13_705 -0.8 -1.0 FIG00953800: hypothetical protein compare
PfGW456L13_5060 -0.8 -2.7 Peptide chain release factor 3 compare
PfGW456L13_4829 -0.8 -2.2 Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family compare
PfGW456L13_1192 -0.8 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
PfGW456L13_68 -0.8 -1.5 hypothetical protein compare
PfGW456L13_1852 -0.8 -3.1 Holliday junction DNA helicase RuvA compare
PfGW456L13_2511 -0.8 -1.0 short-chain dehydrogenase/reductase SDR compare
PfGW456L13_2313 -0.8 -3.0 Chromosome segregation ATPases compare
PfGW456L13_1603 -0.7 -0.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_3311 -0.7 -1.1 hypothetical protein compare
PfGW456L13_2084 -0.7 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_2552 -0.7 -3.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_59 -0.7 -3.8 Sensor histidine kinase/response regulator compare
PfGW456L13_1845 -0.7 -1.8 Cold shock protein CspC compare
PfGW456L13_4031 -0.7 -1.5 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
PfGW456L13_1721 -0.7 -3.6 Tyrosine recombinase XerD compare
PfGW456L13_3671 -0.7 -1.8 hypothetical protein compare
PfGW456L13_793 -0.7 -2.0 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_5086 -0.7 -2.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_4477 -0.7 -2.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
PfGW456L13_1889 -0.7 -2.0 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_858 -0.7 -3.2 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
PfGW456L13_3755 -0.7 -1.4 Amidase (EC 3.5.1.4) compare
PfGW456L13_3413 -0.7 -2.4 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
PfGW456L13_1281 -0.7 -5.2 Catalase (EC 1.11.1.6) compare
PfGW456L13_5049 -0.7 -4.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
PfGW456L13_3333 -0.7 -1.8 hypothetical protein compare
PfGW456L13_430 -0.7 -3.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_565 -0.7 -2.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_2631 -0.7 -1.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
PfGW456L13_1973 -0.7 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_2554 -0.7 -4.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
PfGW456L13_4476 -0.7 -1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
PfGW456L13_1368 -0.7 -2.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_4898 -0.7 -1.2 Inner membrane protein compare
PfGW456L13_3047 -0.7 -1.2 Response regulator compare
PfGW456L13_4916 -0.7 -2.7 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
PfGW456L13_2176 -0.6 -3.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_4088 -0.6 -1.2 Transcriptional regulator, GntR family compare
PfGW456L13_3052 -0.6 -0.9 Response regulator compare
PfGW456L13_1749 -0.6 -1.9 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_4972 -0.6 -1.8 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
PfGW456L13_157 -0.6 -1.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
PfGW456L13_842 -0.6 -2.4 Tyrosine recombinase XerC compare
PfGW456L13_1838 -0.6 -2.1 Sensory box histidine kinase compare
PfGW456L13_1597 -0.6 -4.0 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
PfGW456L13_4511 -0.6 -1.7 Rhodanese-like domain protein compare
PfGW456L13_296 -0.6 -1.5 Polyhydroxyalkanoate granule-associated protein PhaF compare
PfGW456L13_839 -0.6 -1.9 FIG004064: hypothetical protein compare
PfGW456L13_170 -0.6 -4.3 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
PfGW456L13_1021 -0.6 -2.5 Glutathione synthetase (EC 6.3.2.3) compare
PfGW456L13_2394 -0.6 -2.3 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
PfGW456L13_913 -0.6 -3.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_1511 -0.6 -1.5 Osmotically inducible protein OsmY compare
PfGW456L13_234 -0.6 -1.6 3-oxoacyl-[ACP] synthase compare
PfGW456L13_2976 -0.6 -1.3 hypothetical protein compare
PfGW456L13_1515 -0.6 -2.5 hypothetical protein compare
PfGW456L13_140 -0.6 -2.3 FIG003573: hypothetical protein compare
PfGW456L13_753 -0.6 -4.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
PfGW456L13_4641 -0.6 -1.0 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
PfGW456L13_3407 -0.6 -1.9 Acetyl-CoA acetyltransferase compare
PfGW456L13_2780 -0.6 -1.6 hypothetical protein compare
PfGW456L13_2845 -0.6 -0.9 FIG00953703: hypothetical protein compare
PfGW456L13_4639 -0.6 -1.8 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
PfGW456L13_2451 -0.5 -2.6 Two-component system response regulator QseB compare
PfGW456L13_2298 -0.5 -2.9 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
PfGW456L13_1523 -0.5 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
PfGW456L13_2933 -0.5 -1.1 LysR family transcriptional regulator STM2281 compare
PfGW456L13_756 -0.5 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
PfGW456L13_1975 -0.5 -1.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
PfGW456L13_1337 -0.5 -3.2 DedA protein compare
PfGW456L13_3260 -0.5 -0.8 hypothetical protein compare
PfGW456L13_4014 -0.5 -1.0 Chromosome segregation ATPases compare
PfGW456L13_1441 -0.5 -1.1 Large-conductance mechanosensitive channel compare
PfGW456L13_2608 -0.5 -1.2 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
PfGW456L13_3846 -0.5 -1.3 Predicted secretion system X FIG084745: hypothetical protein compare
PfGW456L13_4433 -0.5 -1.1 FIG00955751: hypothetical protein compare
PfGW456L13_295 -0.5 -1.9 Transcriptional regulator PhaD compare
PfGW456L13_1346 -0.5 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_1865 -0.5 -0.8 Cold shock protein CspA compare
PfGW456L13_1983 -0.5 -1.6 hypothetical protein compare
PfGW456L13_997 -0.5 -2.7 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
PfGW456L13_2816 -0.5 -1.2 Various polyols ABC transporter, ATP-binding component compare
PfGW456L13_2523 -0.5 -1.5 Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) compare
PfGW456L13_2363 -0.5 -2.2 Quinohemoprotein amine dehydrogenase gamma subunit (EC 1.4.99.-) compare
PfGW456L13_3411 -0.5 -2.2 Fumarylacetoacetate hydrolase family protein compare
PfGW456L13_2800 -0.5 -0.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
PfGW456L13_213 -0.5 -4.3 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
PfGW456L13_4041 -0.5 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
PfGW456L13_602 -0.5 -2.4 Methionine ABC transporter ATP-binding protein compare
PfGW456L13_2312 -0.5 -2.7 Redox-sensitive transcriptional activator SoxR compare
PfGW456L13_556 -0.5 -1.6 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
PfGW456L13_1084 -0.5 -1.8 HTH-type transcriptional regulator BetI compare
PfGW456L13_2682 -0.5 -1.4 Gll0911 protein compare
PfGW456L13_2149 -0.5 -3.0 Protein of unknown function UPF0060 compare
PfGW456L13_743 -0.5 -2.5 Transcriptional regulator compare
PfGW456L13_260 -0.5 -1.2 General secretion pathway protein J compare
PfGW456L13_1667 -0.5 -2.9 Outer membrane component of tripartite multidrug resistance system compare
PfGW456L13_2821 -0.5 -1.7 DNA polymerase-like protein PA0670 compare
PfGW456L13_3372 -0.5 -1.2 hypothetical protein compare
PfGW456L13_859 -0.5 -2.3 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) compare
PfGW456L13_2842 -0.5 -1.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
PfGW456L13_2002 -0.5 -2.0 Flagellar basal-body rod protein FlgC compare
PfGW456L13_1851 -0.5 -1.5 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
PfGW456L13_1041 -0.5 -1.2 Putative translation initiation inhibitor, yjgF family compare
PfGW456L13_757 -0.5 -1.4 Phosphate transport system regulatory protein PhoU compare
PfGW456L13_1984 -0.5 -1.1 Mg/Co/Ni transporter MgtE / CBS domain compare
PfGW456L13_352 -0.5 -1.5 FIG136845: Rhodanese-related sulfurtransferase compare
PfGW456L13_652 -0.5 -1.3 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
PfGW456L13_1374 -0.5 -1.5 FIG00954871: hypothetical protein compare
PfGW456L13_2190 -0.5 -1.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
PfGW456L13_4621 -0.5 -1.8 OmpA family protein compare
PfGW456L13_591 -0.5 -1.7 Cytochrome c4 compare
PfGW456L13_4108 -0.5 -1.4 CrfX protein compare
PfGW456L13_3585 -0.5 -1.8 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
PfGW456L13_3920 -0.5 -2.2 Carbonic anhydrase (EC 4.2.1.1) compare
PfGW456L13_2941 -0.5 -1.0 Glycerate kinase (EC 2.7.1.31) compare
PfGW456L13_566 -0.4 -2.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
PfGW456L13_2975 -0.4 -2.0 Probable transmembrane protein compare
PfGW456L13_3351 -0.4 -1.5 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
PfGW456L13_2427 -0.4 -1.8 Phenylacetate-CoA oxygenase, PaaG subunit compare
PfGW456L13_151 -0.4 -1.1 HflC protein compare
PfGW456L13_4585 -0.4 -1.5 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
PfGW456L13_2035 -0.4 -3.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
PfGW456L13_3982 -0.4 -0.9 hypothetical protein compare
PfGW456L13_4107 -0.4 -1.8 CmpX compare
PfGW456L13_1842 -0.4 -2.9 Outer membrane porin, OprD family compare
PfGW456L13_2184 -0.4 -1.8 putative polysaccharide polymerase compare
PfGW456L13_3188 -0.4 -1.7 Transcriptional regulator, AraC family compare
PfGW456L13_5018 -0.4 -2.1 Phosphocarrier protein, nitrogen regulation associated compare
PfGW456L13_2046 -0.4 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
PfGW456L13_2094 -0.4 -1.6 CTP:molybdopterin cytidylyltransferase compare
PfGW456L13_4819 -0.4 -2.2 ABC-type sugar transport systems, ATPase components compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens GW456-L13 in stress experiments

For stress Thallium(I) acetate across organisms