Experiment set1IT039 for Pseudomonas simiae WCS417

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -7.1 -4.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -6.1 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_18600 -5.6 -5.4 isopropylmalate isomerase compare
PS417_18585 -5.6 -6.6 3-isopropylmalate dehydrogenase compare
PS417_02510 -5.6 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -5.5 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00185 -5.4 -5.2 tryptophan synthase subunit beta compare
PS417_25720 -5.3 -7.3 anthranilate synthase component II compare
PS417_23545 -5.3 -5.2 gamma-glutamyl kinase compare
PS417_26740 -5.3 -10.4 homoserine acetyltransferase compare
PS417_25725 -5.2 -16.5 anthranilate synthase component I compare
PS417_04415 -5.1 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02000 -5.0 -13.3 glutamate synthase compare
PS417_23800 -5.0 -13.7 ketol-acid reductoisomerase compare
PS417_27795 -5.0 -2.2 orotate phosphoribosyltransferase compare
PS417_02005 -4.8 -11.2 glutamate synthase compare
PS417_01565 -4.8 -3.4 imidazole glycerol phosphate synthase compare
PS417_18595 -4.8 -4.4 3-isopropylmalate dehydratase compare
PS417_01575 -4.6 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26745 -4.5 -5.8 methionine biosynthesis protein MetW compare
PS417_01850 -4.4 -11.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.4 -13.5 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -4.3 -11.0 histidinol dehydrogenase compare
PS417_06375 -4.2 -1.8 deoxycytidine triphosphate deaminase compare
PS417_27835 -4.1 -10.7 endoribonuclease compare
PS417_05595 -4.0 -8.1 ornithine carbamoyltransferase compare
PS417_16465 -4.0 -12.9 sirohydrochlorin ferrochelatase compare
PS417_23805 -3.9 -7.4 acetolactate synthase 3 regulatory subunit compare
PS417_24745 -3.9 -4.9 gamma-glutamyl phosphate reductase compare
PS417_01605 -3.8 -3.7 phosphoglycerate mutase compare
PS417_26730 -3.8 -2.4 pyrroline-5-carboxylate reductase compare
PS417_08125 -3.7 -2.3 prephenate dehydratase compare
PS417_26995 -3.7 -13.7 phosphoserine phosphatase compare
PS417_18530 -3.7 -5.6 O-succinylhomoserine sulfhydrylase compare
PS417_07640 -3.6 -5.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_02415 -3.6 -6.8 phosphoserine phosphatase compare
PS417_25710 -3.5 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_25715 -3.5 -6.7 anthranilate phosphoribosyltransferase compare
PS417_26890 -3.4 -6.7 dihydroxy-acid dehydratase compare
PS417_01580 -3.3 -1.6 imidazole glycerol phosphate synthase compare
PS417_00180 -3.2 -4.4 tryptophan synthase subunit alpha compare
PS417_12290 -3.1 -8.2 sulfite reductase compare
PS417_23110 -3.0 -6.1 2-isopropylmalate synthase compare
PS417_20985 -2.6 -4.3 porin compare
PS417_20160 -2.6 -4.6 cysteine synthase compare
PS417_24155 -2.5 -4.0 ATP-binding protein compare
PS417_27195 -2.3 -2.1 N-acetylglutamate synthase compare
PS417_23995 -2.2 -1.6 preprotein translocase subunit SecG compare
PS417_01560 -2.0 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_12855 -2.0 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20125 -2.0 -5.4 phosphoribosylglycinamide formyltransferase compare
PS417_21500 -1.8 -8.0 C4 dicarboxylate transporter DctA (from data) conserved
PS417_01570 -1.7 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21655 -1.7 -1.8 aspartate kinase compare
PS417_18690 -1.6 -4.7 aromatic amino acid aminotransferase compare
PS417_08200 -1.6 -2.9 hypothetical protein compare
PS417_11440 -1.5 -2.6 hypothetical protein compare
PS417_20610 -1.5 -2.1 hypothetical protein compare
PS417_08245 -1.5 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16490 -1.4 -3.2 cell division protein FtsK compare
PS417_08195 -1.4 -8.6 hypothetical protein compare
PS417_05455 -1.4 -6.3 XRE family transcriptional regulator compare
PS417_22570 -1.3 -1.2 H-NS histone compare
PS417_21125 -1.3 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_22520 -1.3 -3.0 histidine kinase compare
PS417_07170 -1.3 -3.4 hypothetical protein compare
PS417_23775 -1.2 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_08225 -1.2 -5.2 acetolactate synthase compare
PS417_11705 -1.2 -7.7 cyclic peptide transporter compare
PS417_08685 -1.2 -2.5 flagellar hook-length control protein FliK compare
PS417_07595 -1.2 -4.4 PasA protein compare
PS417_23770 -1.1 -2.6 exodeoxyribonuclease V subunit alpha compare
PS417_24835 -1.1 -4.2 hypothetical protein compare
PS417_03465 -1.1 -1.8 type III secretion protein compare
PS417_06200 -1.1 -4.3 protein-PII uridylyltransferase compare
PS417_01305 -1.1 -5.2 Fis family transcriptional regulator conserved
PS417_20620 -1.1 -5.0 glycosyl transferase family 2 compare
PS417_09235 -1.0 -1.3 molecular chaperone compare
PS417_04585 -1.0 -1.7 hypothetical protein compare
PS417_20665 -1.0 -4.4 hypothetical protein compare
PS417_21565 -0.9 -3.1 flagellar basal body rod protein FlgC compare
PS417_13885 -0.9 -2.4 chemotaxis protein CheY compare
PS417_10040 -0.9 -1.1 MFS transporter compare
PS417_17375 -0.9 -3.7 C4-dicarboxylate ABC transporter compare
PS417_18590 -0.9 -3.0 SAM-dependent methyltransferase compare
PS417_08205 -0.9 -3.5 acetyltransferase compare
PS417_05445 -0.9 -1.6 DNA mismatch repair protein MutT compare
PS417_22445 -0.9 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_10220 -0.9 -4.0 hypothetical protein compare
PS417_00550 -0.9 -1.1 hypothetical protein compare
PS417_09035 -0.8 -2.2 hypothetical protein compare
PS417_21425 -0.8 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_08230 -0.8 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_02895 -0.8 -2.2 precorrin-6Y C5,15-methyltransferase compare
PS417_06710 -0.8 -2.0 beta-ketoadipyl CoA thiolase compare
PS417_00085 -0.8 -2.2 16S rRNA methyltransferase compare
PS417_26390 -0.8 -1.5 acyltransferase compare
PS417_26725 -0.8 -2.5 hypothetical protein compare
PS417_04410 -0.8 -0.9 hypothetical protein compare
PS417_27435 -0.8 -3.5 polyphosphate kinase compare
PS417_01635 -0.8 -3.5 nitrogen regulation protein NR(I) compare
PS417_14075 -0.8 -1.9 hypothetical protein compare
PS417_10655 -0.7 -2.2 LuxR family transcriptional regulator compare
PS417_04500 -0.7 -1.7 hypothetical protein compare
PS417_23490 -0.7 -1.2 dihydrofolate reductase compare
PS417_21870 -0.7 -2.5 glycerophosphodiester phosphodiesterase compare
PS417_06645 -0.7 -4.5 RNA polymerase-associated protein RapA compare
PS417_08620 -0.7 -0.9 hypothetical protein compare
PS417_27870 -0.7 -2.9 ATP-dependent DNA helicase RecG compare
PS417_04220 -0.7 -1.3 4-carboxymuconolactone decarboxylase compare
PS417_22825 -0.7 -3.4 hypothetical protein compare
PS417_20030 -0.7 -2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_26990 -0.7 -1.1 RNA pyrophosphohydrolase compare
PS417_05155 -0.7 -2.1 DNA polymerase III subunit chi compare
PS417_01965 -0.7 -1.6 fimbriae biosynthesis protein compare
PS417_24370 -0.7 -0.9 (2Fe-2S)-binding protein compare
PS417_05650 -0.7 -2.8 leucyl-tRNA synthetase compare
PS417_23370 -0.7 -2.1 protoheme IX farnesyltransferase compare
PS417_16990 -0.7 -3.5 acyl-CoA dehydrogenase compare
PS417_23375 -0.7 -1.1 cytochrome C oxidase compare
PS417_18055 -0.7 -1.4 general secretion pathway protein GspK compare
PS417_08540 -0.6 -2.3 RNA helicase compare
PS417_03385 -0.6 -1.2 flavin reductase compare
PS417_19605 -0.6 -1.4 hypothetical protein compare
PS417_05165 -0.6 -2.0 cytosol aminopeptidase compare
PS417_18920 -0.6 -1.6 hypothetical protein compare
PS417_07140 -0.6 -2.1 peptidase M48 compare
PS417_16515 -0.6 -1.7 Clp protease ClpS compare
PS417_16180 -0.6 -2.2 MFS transporter compare
PS417_01920 -0.6 -1.7 ATP-dependent protease subunit HslV compare
PS417_28050 -0.6 -2.8 hypothetical protein compare
PS417_26060 -0.6 -1.4 DNA polymerase III subunit epsilon compare
PS417_06245 -0.6 -1.8 zinc metallopeptidase RseP compare
PS417_28230 -0.6 -2.1 transcriptional regulator compare
PS417_20825 -0.6 -1.2 drug:proton antiporter compare
PS417_13545 -0.6 -1.9 arginine aminotransferase compare
PS417_05060 -0.6 -3.0 PsiE family protein compare
PS417_21570 -0.6 -1.7 flagellar basal body rod protein FlgB compare
PS417_15390 -0.6 -2.0 hypothetical protein compare
PS417_20655 -0.6 -4.3 group 1 glycosyl transferase compare
PS417_04425 -0.6 -2.9 histidinol-phosphate aminotransferase compare
PS417_27865 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_11845 -0.6 -2.8 RpiR family transcriptional regulator compare
PS417_21705 -0.6 -2.3 arginine N-succinyltransferase compare
PS417_00650 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_03705 -0.6 -1.5 2-alkenal reductase compare
PS417_27875 -0.6 -3.0 histidine kinase compare
PS417_19350 -0.6 -2.5 GTP cyclohydrolase compare
PS417_13800 -0.5 -1.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23135 -0.5 -1.2 GTP-binding protein compare
PS417_23385 -0.5 -3.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_26240 -0.5 -1.3 N-methylproline demethylase compare
PS417_18090 -0.5 -1.5 iron ABC transporter compare
PS417_18905 -0.5 -2.0 acyl-CoA dehydrogenase compare
PS417_05540 -0.5 -2.5 histidine kinase compare
PS417_03935 -0.5 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_01425 -0.5 -2.0 AraC family transcriptional regulator compare
PS417_14305 -0.5 -1.5 hydroxyproline-2-epimerase compare
PS417_16875 -0.5 -2.5 signal peptidase compare
PS417_13235 -0.5 -2.1 siderophore biosynthesis protein compare
PS417_01210 -0.5 -3.1 hypothetical protein compare
PS417_05695 -0.5 -2.5 transcriptional regulator compare
PS417_10135 -0.5 -1.0 phage tail protein compare
PS417_12390 -0.5 -1.0 hypothetical protein compare
PS417_08045 -0.5 -1.2 uracil permease compare
PS417_09440 -0.5 -1.5 MerR family transcriptional regulator compare
PS417_21480 -0.5 -1.0 23S rRNA pseudouridylate synthase compare
PS417_09140 -0.5 -1.5 biopolymer transporter ExbB compare
PS417_01285 -0.5 -1.5 haloacid dehalogenase compare
PS417_27010 -0.5 -3.4 threonine dehydratase compare
PS417_20265 -0.5 -2.0 transcriptional regulator compare
PS417_12900 -0.5 -2.2 Fe-S protein compare
PS417_20660 -0.5 -2.8 hypothetical protein compare
PS417_11930 -0.5 -2.9 hypothetical protein compare
PS417_12310 -0.5 -2.8 methionine synthase compare
PS417_19430 -0.5 -1.6 ureidoglycolate hydrolase compare
PS417_17240 -0.5 -1.4 trigger factor compare
PS417_22740 -0.5 -2.9 imelysin compare
PS417_11390 -0.5 -2.2 LysR family transcriptional regulator compare
PS417_13895 -0.5 -2.0 chemotaxis protein CheB compare
PS417_05570 -0.5 -1.7 DeoR faimly transcriptional regulator compare
PS417_06355 -0.5 -1.3 protein-L-isoaspartate O-methyltransferase compare
PS417_26815 -0.5 -1.5 peptidase M16 compare
PS417_10680 -0.5 -1.5 enoyl-CoA hydratase compare
PS417_02890 -0.5 -1.6 cobalt-precorrin-6X reductase compare
PS417_19860 -0.5 -3.6 flagellar hook protein FlgL compare
PS417_04875 -0.5 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18860 -0.5 -2.7 transcriptional regulator compare
PS417_24785 -0.5 -1.5 nucleoside-diphosphate sugar epimerase compare
PS417_05235 -0.5 -1.2 peptidase inhibitor I42 compare
PS417_09915 -0.5 -1.0 hypothetical protein compare
PS417_22170 -0.5 -1.8 acetyltransferase compare
PS417_19505 -0.5 -1.5 2,4-diaminobutyrate 4-aminotransferase compare
PS417_06600 -0.5 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23380 -0.5 -1.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_22195 -0.5 -2.3 peptidase compare
PS417_15750 -0.5 -1.2 protease compare
PS417_17550 -0.5 -1.3 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_22505 -0.5 -2.5 mechanosensitive ion channel protein MscS compare
PS417_11400 -0.5 -1.0 phosphoglycerate mutase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas simiae WCS417

For carbon source Sodium succinate dibasic hexahydrate across organisms