Experiment set1IT039 for Pseudomonas simiae WCS417

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_06945 +1.2 2.6 membrane protein compare
PS417_13525 +1.2 3.1 membrane protein compare
PS417_01715 +1.2 2.9 hypothetical protein compare
PS417_01435 +1.1 2.2 hypothetical protein compare
PS417_05975 +1.0 1.7 chemotaxis protein CheW compare
PS417_01915 +1.0 1.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06445 +0.9 2.9 iron-siderophore ABC transporter permease compare
PS417_19620 +0.9 2.5 hypothetical protein compare
PS417_06635 +0.8 1.7 ferredoxin compare
PS417_02225 +0.8 2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_19600 +0.8 1.4 exonuclease compare
PS417_27605 +0.8 3.7 hypothetical protein compare
PS417_10245 +0.7 1.7 hypothetical protein compare
PS417_00900 +0.7 2.8 4-aminobutyrate aminotransferase compare
PS417_09460 +0.7 2.3 alkanesulfonate monooxygenase compare
PS417_23095 +0.7 1.4 exodeoxyribonuclease compare
PS417_18105 +0.7 1.4 iron-dicitrate transporter substrate-binding subunit compare
PS417_18205 +0.7 2.2 aldehyde dehydrogenase compare
PS417_06675 +0.7 2.5 ATP-dependent helicase compare
PS417_19285 +0.7 1.7 ankyrin compare
PS417_15290 +0.7 1.9 type VI secretion protein compare
PS417_00975 +0.7 1.6 hypothetical protein compare
PS417_22315 +0.7 1.9 DNA-3-methyladenine glycosylase compare
PS417_00385 +0.7 1.3 Fur family transcriptional regulator compare
PS417_16720 +0.6 1.0 membrane protein compare
PS417_16565 +0.6 2.2 secretin compare
PS417_20725 +0.6 1.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_15100 +0.6 2.1 BatB protein compare
PS417_09210 +0.6 1.0 TetR family transcriptional regulator compare
PS417_14935 +0.6 2.3 transposase compare
PS417_11830 +0.6 2.0 membrane protein compare
PS417_22370 +0.6 3.9 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_23855 +0.6 1.7 ABC transporter substrate-binding protein compare
PS417_05830 +0.6 2.6 hypothetical protein compare
PS417_27155 +0.6 1.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_12870 +0.6 1.6 enoyl-CoA hydratase compare
PS417_01630 +0.6 1.9 hypothetical protein compare
PS417_24840 +0.6 1.6 hypothetical protein compare
PS417_08295 +0.6 1.6 ATPase compare
PS417_25155 +0.6 1.2 hypothetical protein compare
PS417_19825 +0.6 3.1 ATPase AAA compare
PS417_08435 +0.6 1.2 pilus assembly protein PilZ compare
PS417_03455 +0.6 0.8 type III secretion protein compare
PS417_03380 +0.6 1.4 hypothetical protein compare
PS417_26125 +0.6 1.7 glutathione S-transferase compare
PS417_15480 +0.6 1.4 ABC transporter substrate-binding protein compare
PS417_01945 +0.6 1.3 nuclease compare
PS417_23150 +0.6 2.1 Cro/Cl family transcriptional regulator compare
PS417_22210 +0.5 1.6 AraC family transcriptional regulator compare
PS417_06965 +0.5 1.9 cysteine methyltransferase compare
PS417_12735 +0.5 1.3 peroxidase compare
PS417_13850 +0.5 2.4 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_18370 +0.5 1.3 hypothetical protein compare
PS417_20715 +0.5 1.9 cytochrome Cbb3 compare
PS417_24895 +0.5 1.3 hypothetical protein compare
PS417_14810 +0.5 1.7 Fosmidomycin resistance protein compare
PS417_10390 +0.5 2.0 RNA polymerase subunit sigma24 compare
PS417_17035 +0.5 1.1 Cro/Cl family transcriptional regulator compare
PS417_16555 +0.5 1.2 cupin compare
PS417_14295 +0.5 1.9 AraC family transcriptional regulator compare
PS417_26420 +0.5 1.2 hypothetical protein compare
PS417_00455 +0.5 1.0 hypothetical protein compare
PS417_13730 +0.5 1.4 hypothetical protein compare
PS417_17795 +0.5 1.4 ABC transporter permease compare
PS417_23460 +0.5 1.9 LysR family transcriptional regulator compare
PS417_19935 +0.5 2.1 hypothetical protein compare
PS417_04835 +0.5 1.4 hemolysin D compare
PS417_11615 +0.5 0.8 urea ABC transporter ATP-binding protein compare
PS417_04960 +0.5 1.2 hypothetical protein compare
PS417_12525 +0.5 1.8 hypothetical protein compare
PS417_00175 +0.5 1.0 CigR compare
PS417_17330 +0.5 2.1 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_08545 +0.5 1.4 aromatic ring-opening dioxygenase LigB compare
PS417_26155 +0.5 1.8 hypothetical protein compare
PS417_19515 +0.5 2.0 histidine kinase compare
PS417_16885 +0.5 1.7 hypothetical protein compare
PS417_23205 +0.5 1.4 transcriptional regulator compare
PS417_12035 +0.5 1.2 dihydroxyacetone kinase compare
PS417_17420 +0.5 2.2 ethanol oxidation regulatory protein ercA (from data) compare
PS417_11760 +0.5 1.8 Fis family transcriptional regulator compare
PS417_14235 +0.5 1.7 hypothetical protein compare
PS417_13830 +0.5 2.8 hypothetical protein compare
PS417_02880 +0.5 1.2 copper chaperone compare
PS417_27190 +0.5 1.5 taurine ABC transporter substrate-binding protein compare
PS417_03525 +0.5 1.0 hypothetical protein compare
PS417_23315 +0.5 0.9 transcriptional regulator compare
PS417_17445 +0.5 1.6 sulfur oxidation protein SoxZ compare
PS417_17305 +0.5 1.0 hypothetical protein compare
PS417_27290 +0.5 1.1 hypothetical protein compare
PS417_14425 +0.5 2.1 alkylhydroperoxidase compare
PS417_06040 +0.5 1.1 hypothetical protein compare
PS417_25765 +0.4 1.3 transcriptional regulator compare
PS417_19650 +0.4 1.7 chemotaxis protein CheW compare
PS417_09695 +0.4 1.0 hydrolase compare
PS417_17440 +0.4 1.1 beta-lactamase compare
PS417_13090 +0.4 1.6 dienelactone hydrolase compare
PS417_23705 +0.4 1.5 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
PS417_17070 +0.4 1.1 RNA polymerase subunit sigma-24 compare
PS417_18885 +0.4 0.8 GntR family transcriptional regulator compare
PS417_23755 +0.4 1.6 membrane protein compare
PS417_20880 +0.4 1.4 GntR family transcriptional regulator compare
PS417_14635 +0.4 2.0 GDSL family lipase compare
PS417_27940 +0.4 1.2 type VI secretion protein compare
PS417_24650 +0.4 1.3 membrane protein compare
PS417_10030 +0.4 2.5 hypothetical protein compare
PS417_16120 +0.4 2.4 transcriptional regulator compare
PS417_05535 +0.4 1.2 Fis family transcriptional regulator compare
PS417_11700 +0.4 2.9 ligand-gated channel compare
PS417_22300 +0.4 1.0 LTXXQ domain protein compare
PS417_03810 +0.4 0.7 hypothetical protein compare
PS417_22980 +0.4 1.9 GntR family transcriptional regulator compare
PS417_15125 +0.4 0.8 glutathione S-transferase compare
PS417_12490 +0.4 1.0 autotransporter adhesin compare
PS417_17630 +0.4 1.6 RNA polymerase sigma factor compare
PS417_07705 +0.4 2.3 phosphatase compare
PS417_16100 +0.4 1.7 antibiotic biosynthesis monooxygenase compare
PS417_13965 +0.4 1.5 acetoin utilization protein compare
PS417_19125 +0.4 1.6 LysR family transcriptional regulator compare
PS417_12985 +0.4 1.8 DNA-binding protein compare
PS417_03260 +0.4 1.3 5S ribosomal RNA compare
PS417_27640 +0.4 1.1 TetR family transcriptional regulator compare
PS417_03145 +0.4 1.0 acetyl-CoA acetyltransferase compare
PS417_00580 +0.4 1.7 acyl-CoA dehydrogenase compare
PS417_06280 +0.4 1.8 ribonuclease HII compare
PS417_21890 +0.4 2.2 magnesium transporter CorA compare
PS417_28260 +0.4 2.5 VdlD compare
PS417_15880 +0.4 1.5 GNAT family acetyltransferase compare
PS417_23170 +0.4 1.0 FeS assembly protein IscX compare
PS417_24885 +0.4 1.4 transcriptional regulator compare
PS417_12145 +0.4 2.0 acetoacetyl-CoA synthetase compare
PS417_03725 +0.4 1.6 acyltransferase compare
PS417_06680 +0.4 3.1 nuclease PIN compare
PS417_03030 +0.4 2.0 pyrophosphatase compare
PS417_07990 +0.4 1.5 endoribonuclease L-PSP compare
PS417_10255 +0.4 1.8 hypothetical protein compare
PS417_12015 +0.4 0.9 phosphoglycerate mutase compare
PS417_10095 +0.4 1.0 hypothetical protein compare
PS417_17930 +0.4 0.8 aldehyde dehydrogenase compare
PS417_17160 +0.4 1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_11020 +0.4 1.1 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_07010 +0.4 0.8 pseudouridine synthase compare
PS417_12260 +0.4 2.1 hypothetical protein compare
PS417_16255 +0.4 0.9 RNA polymerase sigma factor compare
PS417_10675 +0.4 0.6 TetR family transcriptional regulator compare
PS417_15955 +0.4 2.0 secretion protein HylD compare
PS417_03780 +0.4 1.5 general secretion pathway protein GspH compare
PS417_15610 +0.4 1.9 GDP-mannose pyrophosphatase compare
PS417_19665 +0.4 0.9 flagellar motor protein MotD compare
PS417_03495 +0.4 1.3 type III secretory protein EscS compare
PS417_21055 +0.4 1.5 threonyl-tRNA synthetase compare
PS417_14140 +0.4 1.1 membrane protein compare
PS417_19375 +0.4 2.2 LysR family transcriptional regulator compare
PS417_07695 +0.4 2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_01135 +0.4 1.8 taurine dioxygenase compare
PS417_25275 +0.4 1.3 hypothetical protein compare
PS417_12520 +0.4 1.3 hypothetical protein compare
PS417_03485 +0.4 2.1 type III secretion protein compare
PS417_15435 +0.4 1.6 metallophosphatase compare
PS417_03200 +0.4 1.2 ArsR family transcriptional regulator compare
PS417_00345 +0.4 1.4 copper-binding protein compare
PS417_26615 +0.4 1.8 triphosphoribosyl-dephospho-CoA synthase compare
PS417_11480 +0.4 1.6 hypothetical protein compare
PS417_11300 +0.4 1.6 general secretion pathway protein GspE compare
PS417_18355 +0.4 1.8 DNA-binding protein compare
PS417_20855 +0.4 0.6 hypothetical protein compare
PS417_16790 +0.4 1.3 ABC transporter permease compare
PS417_18850 +0.4 1.9 hypothetical protein compare
PS417_02280 +0.4 0.7 GlcNAc-PI de-N-acetylase compare
PS417_07945 +0.4 0.8 hypothetical protein compare
PS417_06630 +0.4 2.6 diguanylate phosphodiesterase compare
PS417_18265 +0.4 1.1 AsnC family transcriptional regulator compare
PS417_12400 +0.4 1.2 oxidoreductase compare
PS417_03510 +0.4 1.4 type III secretion system negative regulatory protein RspV compare
PS417_06540 +0.3 0.8 membrane protein compare
PS417_16825 +0.3 1.8 membrane protein compare
PS417_15790 +0.3 1.8 hypothetical protein compare
PS417_18975 +0.3 2.2 GntR family transcriptional regulator compare
PS417_10125 +0.3 0.9 hypothetical protein compare
PS417_17000 +0.3 1.5 MerR family transcriptional regulator compare
PS417_02805 +0.3 0.7 urease subunit gamma compare
PS417_16175 +0.3 2.1 porin compare
PS417_04210 +0.3 1.7 Galactarate dehydratase (EC 4.2.1.42) (from data) compare
PS417_08385 +0.3 1.8 hypothetical protein compare
PS417_21850 +0.3 0.6 LysR family transcriptional regulator compare
PS417_14605 +0.3 1.4 adenylate kinase compare
PS417_03190 +0.3 1.4 antibiotic biosynthesis monooxygenase compare
PS417_20335 +0.3 1.9 hypothetical protein compare
PS417_27635 +0.3 1.2 magnesium chelatase compare
PS417_15235 +0.3 1.2 short-chain dehydrogenase compare
PS417_14940 +0.3 0.9 LysR family transcriptional regulator compare
PS417_25170 +0.3 2.0 FAD-binding protein compare
PS417_19400 +0.3 1.4 amino acid transporter LysE compare
PS417_15915 +0.3 0.7 hypothetical protein compare
PS417_16975 +0.3 1.4 GNAT family acetyltransferase compare
PS417_13715 +0.3 1.8 hypothetical protein compare
PS417_19945 +0.3 1.6 MarR family transcriptional regulator compare
PS417_04090 +0.3 1.7 hypothetical protein compare
PS417_17965 +0.3 1.5 LysR family transcriptional regulator compare
PS417_27135 +0.3 0.4 glutamine synthetase compare
PS417_20180 +0.3 2.1 agmatinase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas simiae WCS417

For carbon source Sodium succinate dibasic hexahydrate across organisms