Experiment set1IT039 for Variovorax sp. OAS795

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS25115 -6.8 -9.4 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABID97_RS25125 -6.8 -8.1 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS25140 -6.7 -13.7 isovaleryl-CoA dehydrogenase conserved
ABID97_RS06575 -6.6 -6.4 trehalose-phosphatase compare
ABID97_RS25130 -6.4 -6.2 carboxyl transferase domain-containing protein compare
ABID97_RS07855 -6.1 -3.9 ABC transporter ATP-binding protein compare
ABID97_RS15375 -6.1 -5.1 DUF934 domain-containing protein compare
ABID97_RS01860 -6.0 -24.2 indolepyruvate ferredoxin oxidoreductase family protein conserved
ABID97_RS16600 -5.9 -8.0 CysB family HTH-type transcriptional regulator compare
ABID97_RS25190 -5.8 -17.5 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABID97_RS16595 -5.8 -6.5 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS15380 -5.7 -12.3 nitrite/sulfite reductase compare
ABID97_RS11115 -5.7 -12.3 isocitrate lyase compare
ABID97_RS07850 -5.7 -8.7 ABC transporter ATP-binding protein compare
ABID97_RS25100 -5.7 -9.0 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS07840 -5.5 -10.6 branched-chain amino acid ABC transporter permease compare
ABID97_RS20615 -5.5 -6.0 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS25145 -5.4 -6.0 AraC family transcriptional regulator compare
ABID97_RS01565 -5.4 -11.5 DNA starvation/stationary phase protection protein compare
ABID97_RS16565 -5.3 -12.4 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS07845 -5.2 -11.7 ABC transporter ATP-binding protein compare
ABID97_RS07775 -5.2 -5.8 phosphoribosylglycinamide formyltransferase compare
ABID97_RS04710 -5.0 -11.8 malate synthase G compare
ABID97_RS16910 -5.0 -10.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS07430 -4.8 -8.6 pantoate--beta-alanine ligase compare
ABID97_RS05250 -4.7 -5.6 anthranilate synthase component I compare
ABID97_RS25085 -4.5 -3.1 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS09180 -4.4 -4.3 DNA polymerase I compare
ABID97_RS07405 -4.2 -8.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07435 -4.1 -10.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS08425 -4.1 -5.6 tryptophan synthase subunit alpha compare
ABID97_RS02600 -4.0 -2.7 homoserine O-acetyltransferase compare
ABID97_RS25015 -3.9 -3.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS22620 -3.9 -5.9 response regulator transcription factor compare
ABID97_RS02455 -3.8 -5.4 nucleotidyltransferase family protein compare
ABID97_RS28635 -3.7 -5.8 IclR family transcriptional regulator compare
ABID97_RS12180 -3.6 -2.5 hypothetical protein compare
ABID97_RS13990 -3.6 -4.2 amino acid aminotransferase compare
ABID97_RS05275 -3.6 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS06345 -3.5 -4.2 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS17600 -3.5 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS16535 -3.4 -8.5 arginine/lysine/ornithine decarboxylase compare
ABID97_RS25525 -3.4 -5.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS17590 -3.4 -12.9 endopeptidase La compare
ABID97_RS23455 -3.4 -3.2 hypothetical protein compare
ABID97_RS14260 -3.3 -8.9 FtsH protease activity modulator HflK compare
ABID97_RS22625 -3.2 -14.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS28990 -3.2 -6.1 aspartate 1-decarboxylase compare
ABID97_RS24920 -3.2 -2.4 Holliday junction branch migration protein RuvA compare
ABID97_RS13860 -3.2 -6.0 hypothetical protein compare
ABID97_RS03805 -3.2 -1.8 ATP-binding protein compare
ABID97_RS14090 -3.2 -1.8 response regulator transcription factor compare
ABID97_RS15370 -3.1 -14.3 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS21150 -3.0 -9.5 FAD-dependent oxidoreductase compare
ABID97_RS14160 -3.0 -8.3 cell division protein ZapE compare
ABID97_RS08240 -3.0 -2.3 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS14265 -3.0 -8.3 protease modulator HflC compare
ABID97_RS23220 -2.9 -2.3 glutamate synthase subunit beta compare
ABID97_RS15365 -2.9 -7.9 sulfate adenylyltransferase subunit CysD compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03910 -2.9 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS19440 -2.8 -3.9 CoA transferase subunit A compare
ABID97_RS10295 -2.8 -2.2 winged helix-turn-helix transcriptional regulator compare
ABID97_RS03800 -2.8 -2.7 O-antigen ligase family protein compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS03110 -2.7 -6.3 helix-turn-helix transcriptional regulator compare
ABID97_RS15360 -2.7 -9.3 GTP-binding protein compare
ABID97_RS16705 -2.7 -12.0 ribonuclease G compare
ABID97_RS06450 -2.7 -1.9 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS23915 -2.7 -4.8 heme o synthase compare
ABID97_RS23450 -2.7 -5.4 MBOAT family protein compare
ABID97_RS04500 -2.7 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS05365 -2.6 -4.6 DUF4390 domain-containing protein compare
ABID97_RS14920 -2.6 -14.4 IclR family transcriptional regulator compare
ABID97_RS01855 -2.6 -1.5 preprotein translocase subunit YajC compare
ABID97_RS05370 -2.6 -5.9 ATP-binding protein compare
ABID97_RS14095 -2.6 -11.6 PAS domain S-box protein compare
ABID97_RS14625 -2.5 -5.7 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS07500 -2.5 -2.9 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS15665 -2.5 -6.6 [protein-PII] uridylyltransferase compare
ABID97_RS05765 -2.4 -2.8 UDP-glucose 4-epimerase GalE compare
ABID97_RS03790 -2.4 -8.9 branched-chain amino acid transaminase conserved
ABID97_RS17850 -2.4 -1.2 tetratricopeptide repeat protein compare
ABID97_RS03680 -2.3 -7.0 lysophospholipid transporter LplT compare
ABID97_RS16915 -2.3 -7.7 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS03415 -2.3 -7.5 histidine utilization repressor compare
ABID97_RS10885 -2.3 -5.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS12140 -2.2 -7.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS04505 -2.2 -2.9 ferric iron uptake transcriptional regulator compare
ABID97_RS06460 -2.2 -2.0 sigma 54-interacting transcriptional regulator compare
ABID97_RS06600 -2.1 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS11640 -2.1 -10.8 TetR family transcriptional regulator compare
ABID97_RS04765 -2.1 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS08765 -2.1 -6.4 CobD/CbiB family protein compare
ABID97_RS07260 -2.1 -5.4 TIM44-like domain-containing protein compare
ABID97_RS08480 -2.1 -1.4 citrate synthase compare
ABID97_RS23425 -2.1 -2.2 tRNA-Pro compare
ABID97_RS05750 -2.1 -3.0 glycosyltransferase compare
ABID97_RS19375 -2.1 -5.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS07000 -2.1 -9.1 threonine ammonia-lyase, biosynthetic compare
ABID97_RS24805 -2.0 -10.3 enoyl-CoA hydratase compare
ABID97_RS15465 -2.0 -11.1 sulfate ABC transporter substrate-binding protein compare
ABID97_RS05925 -2.0 -10.4 LysR substrate-binding domain-containing protein compare
ABID97_RS07415 -2.0 -9.7 quinolinate synthase NadA compare
ABID97_RS23225 -2.0 -12.6 glutamate synthase-related protein compare
ABID97_RS05755 -2.0 -2.6 glycosyltransferase compare
ABID97_RS17265 -2.0 -4.9 two-component system response regulator OmpR compare
ABID97_RS02120 -1.9 -9.8 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS00255 -1.9 -13.1 type IV pilus twitching motility protein PilT compare
ABID97_RS14850 -1.9 -4.8 P-II family nitrogen regulator compare
ABID97_RS19410 -1.9 -4.1 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS08445 -1.9 -9.3 FimV/HubP family polar landmark protein compare
ABID97_RS17895 -1.9 -6.6 transcriptional regulator NrdR compare
ABID97_RS06190 -1.9 -8.1 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS15590 -1.9 -1.4 disulfide bond formation protein B compare
ABID97_RS02110 -1.9 -13.9 type IV pilus modification protein PilV compare
ABID97_RS24170 -1.8 -5.1 ATP-binding protein compare
ABID97_RS10105 -1.8 -4.6 CBS domain-containing protein compare
ABID97_RS06520 -1.8 -1.7 SAM-dependent methyltransferase compare
ABID97_RS02115 -1.8 -9.0 PilW family protein compare
ABID97_RS08220 -1.8 -11.4 phosphoenolpyruvate carboxylase compare
ABID97_RS02460 -1.8 -12.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS08440 -1.7 -6.1 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS07390 -1.7 -3.1 rhodanese-like domain-containing protein compare
ABID97_RS07410 -1.7 -5.9 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS19955 -1.7 -1.5 glycerol-3-phosphate dehydrogenase compare
ABID97_RS15100 -1.7 -2.4 helix-turn-helix transcriptional regulator compare
ABID97_RS02125 -1.6 -13.9 PilC/PilY family type IV pilus protein compare
ABID97_RS05670 -1.6 -1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS27795 -1.6 -1.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS23430 -1.6 -9.6 type IV-A pilus assembly ATPase PilB compare
ABID97_RS02130 -1.6 -10.0 type IV pilin protein compare
ABID97_RS23435 -1.6 -12.1 type II secretion system F family protein compare
ABID97_RS06160 -1.6 -6.4 GTP-binding protein compare
ABID97_RS11290 -1.6 -1.0 DNA repair protein RadC compare
ABID97_RS24705 -1.6 -5.6 response regulator compare
ABID97_RS01865 -1.6 -6.1 Lrp/AsnC family transcriptional regulator compare
ABID97_RS27450 -1.5 -1.2 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS04630 -1.5 -4.6 glutathione synthase compare
ABID97_RS25900 -1.5 -1.1 ABC transporter permease compare
ABID97_RS02420 -1.5 -5.7 protealysin inhibitor emfourin compare
ABID97_RS14925 -1.5 -9.0 arginyltransferase compare
ABID97_RS14665 -1.5 -3.0 UvrD-helicase domain-containing protein compare
ABID97_RS16985 -1.5 -3.2 transcriptional repressor LexA compare
ABID97_RS01595 -1.5 -4.4 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS02215 -1.5 -11.3 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS06095 -1.4 -9.1 MBL fold metallo-hydrolase compare
ABID97_RS23325 -1.4 -5.8 cytochrome c biogenesis protein ResB compare
ABID97_RS20610 -1.4 -6.1 DNA-binding protein YbiB compare
ABID97_RS19655 -1.4 -10.1 aminomethyl-transferring glycine dehydrogenase conserved
ABID97_RS23780 -1.4 -6.1 ABC transporter permease compare
ABID97_RS27365 -1.4 -0.9 nitrogen assimilation transcriptional regulator NAC compare
ABID97_RS02135 -1.4 -6.3 GspH/FimT family pseudopilin compare
ABID97_RS10815 -1.4 -11.0 phosphoenolpyruvate synthase compare
ABID97_RS06275 -1.4 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS25895 -1.4 -1.5 ABC transporter permease compare
ABID97_RS03915 -1.4 -7.5 DUF4124 domain-containing protein compare
ABID97_RS23950 -1.4 -7.4 cytochrome c oxidase assembly protein compare
ABID97_RS23790 -1.4 -4.9 ATP-binding cassette domain-containing protein compare
ABID97_RS03640 -1.4 -4.1 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS24040 -1.4 -2.2 MarR family transcriptional regulator compare
ABID97_RS13450 -1.4 -2.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS19065 -1.4 -3.1 GntR family transcriptional regulator compare
ABID97_RS29015 -1.4 -1.3 transcriptional regulator GcvA compare
ABID97_RS18255 -1.4 -1.5 hypothetical protein compare
ABID97_RS09595 -1.4 -1.2 Arc family DNA-binding protein compare
ABID97_RS17270 -1.3 -6.2 ATP-binding protein compare
ABID97_RS16690 -1.3 -5.1 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS19645 -1.3 -1.9 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS01105 -1.3 -2.2 AMP-binding protein compare
ABID97_RS17250 -1.3 -6.6 3-hydroxybutyrate dehydrogenase compare
ABID97_RS24045 -1.3 -2.7 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS23440 -1.3 -8.2 A24 family peptidase compare
ABID97_RS08430 -1.3 -1.8 tryptophan synthase subunit beta compare
ABID97_RS23940 -1.3 -6.6 cytochrome c oxidase subunit 3 compare
ABID97_RS24055 -1.3 -2.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS01840 -1.3 -8.6 DUF1631 family protein compare
ABID97_RS22705 -1.2 -6.4 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS17200 -1.2 -9.2 ribonuclease R compare
ABID97_RS09935 -1.2 -4.9 hypothetical protein compare
ABID97_RS23650 -1.2 -10.0 serine/threonine-protein kinase compare
ABID97_RS17595 -1.2 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS15490 -1.2 -5.5 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS23320 -1.2 -6.1 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS13925 -1.2 -5.8 GntR family transcriptional regulator compare
ABID97_RS02140 -1.2 -7.5 sugar transferase compare
ABID97_RS23695 -1.2 -7.2 heat-inducible transcriptional repressor HrcA compare
ABID97_RS15995 -1.2 -3.9 PilZ domain-containing protein compare
ABID97_RS16920 -1.2 -7.8 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS11545 -1.1 -1.1 branched-chain amino acid ABC transporter permease compare
ABID97_RS23775 -1.1 -4.9 ABC transporter permease compare
ABID97_RS14115 -1.1 -4.2 dihydrolipoyl dehydrogenase compare
ABID97_RS22110 -1.1 -5.0 NCS2 family permease compare
ABID97_RS23665 -1.1 -1.7 DNA-directed RNA polymerase subunit omega compare
ABID97_RS05820 -1.1 -3.9 FadR/GntR family transcriptional regulator compare
ABID97_RS06060 -1.1 -0.9 hypothetical protein compare
ABID97_RS10355 -1.1 -4.6 FadR/GntR family transcriptional regulator compare
ABID97_RS23270 -1.1 -5.9 pilus assembly protein PilP compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Leucine in Variovorax sp. OAS795

For carbon source L-Leucine across organisms