Experiment set1IT039 for Rhizobium sp. OAE497

Compare to:

Sodium Formate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS18590 -6.9 -4.8 homoserine O-succinyltransferase compare
ABIE40_RS19355 -6.9 -4.8 thioredoxin compare
ABIE40_RS02340 -6.7 -6.6 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS11950 -6.6 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS19050 -6.5 -7.8 3-isopropylmalate dehydrogenase compare
ABIE40_RS18380 -6.4 -10.7 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS00245 -6.0 -10.0 prephenate dehydratase compare
ABIE40_RS09095 -5.8 -4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS13330 -5.8 -11.2 2-isopropylmalate synthase compare
ABIE40_RS06555 -5.7 -3.2 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS19395 -5.7 -3.9 PTS sugar transporter subunit IIA compare
ABIE40_RS09545 -5.5 -3.5 anthranilate phosphoribosyltransferase compare
ABIE40_RS16815 -5.4 -13.4 xylulokinase compare
ABIE40_RS16320 -5.3 -3.7 histidinol-phosphatase compare
ABIE40_RS03665 -5.3 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS17530 -5.2 -5.1 diaminopimelate decarboxylase compare
ABIE40_RS10725 -5.2 -3.6 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS02725 -5.2 -3.6 histidinol dehydrogenase compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS20460 -5.1 -3.5 precorrin-3B synthase compare
ABIE40_RS19435 -5.1 -2.8 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS10720 -5.0 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.9 -3.4 cobyrinate a,c-diamide synthase compare
ABIE40_RS20450 -4.8 -3.3 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS09725 -4.8 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS18925 -4.7 -4.6 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS19440 -4.7 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS19330 -4.7 -3.3 phosphoribosylanthranilate isomerase compare
ABIE40_RS19460 -4.7 -4.6 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS11165 -4.7 -3.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS09360 -4.6 -3.2 excinuclease ABC subunit UvrA compare
ABIE40_RS11175 -4.6 -5.4 cobyric acid synthase compare
ABIE40_RS17010 -4.5 -7.6 sugar ABC transporter permease compare
ABIE40_RS13410 -4.5 -4.4 anthranilate synthase compare
ABIE40_RS20440 -4.5 -3.1 cobalt-precorrin-6A reductase compare
ABIE40_RS06270 -4.5 -6.8 amidophosphoribosyltransferase compare
ABIE40_RS02320 -4.5 -3.1 aspartate aminotransferase family protein compare
ABIE40_RS20435 -4.4 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS06560 -4.4 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS11150 -4.4 -8.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS11095 -4.4 -3.1 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS10180 -4.4 -4.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS22300 -4.4 -5.3 superoxide dismutase compare
ABIE40_RS11370 -4.4 -12.6 AraC family transcriptional regulator compare
ABIE40_RS19450 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS17595 -4.4 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS19040 -4.3 -7.6 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS09150 -4.2 -16.0 nitrite/sulfite reductase compare
ABIE40_RS11375 -4.2 -17.1 NAD(P)-dependent alcohol dehydrogenase compare
ABIE40_RS27160 -4.2 -1.4 low affinity iron permease family protein compare
ABIE40_RS19130 -4.2 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20455 -4.2 -2.3 precorrin-8X methylmutase compare
ABIE40_RS11495 -4.1 -6.2 acetolactate synthase 3 large subunit compare
ABIE40_RS20430 -4.1 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS16070 -4.1 -3.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS09155 -4.0 -5.2 DUF934 domain-containing protein compare
ABIE40_RS06930 -4.0 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS08005 -4.0 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS20465 -4.0 -2.7 precorrin-6A synthase (deacetylating) compare
ABIE40_RS02325 -3.9 -4.9 ornithine carbamoyltransferase compare
ABIE40_RS12135 -3.9 -2.7 methionine synthase compare
ABIE40_RS18920 -3.9 -6.8 glutamate 5-kinase compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS19445 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS17525 -3.9 -2.0 lipoprotein compare
ABIE40_RS17645 -3.8 -2.7 cobaltochelatase subunit CobT compare
ABIE40_RS17650 -3.8 -5.8 cobaltochelatase subunit CobS compare
ABIE40_RS11155 -3.8 -8.4 cobaltochelatase subunit CobN compare
ABIE40_RS01970 -3.7 -3.0 acetylglutamate kinase compare
ABIE40_RS12925 -3.7 -13.7 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS17015 -3.7 -10.2 sugar ABC transporter substrate-binding protein compare
ABIE40_RS09660 -3.7 -14.5 AI-2E family transporter compare
ABIE40_RS08635 -3.6 -14.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS05430 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE40_RS18720 -3.6 -2.5 polyprenyl synthetase family protein compare
ABIE40_RS00930 -3.6 -9.1 ABC transporter permease compare
ABIE40_RS14990 -3.5 -10.8 glycosyltransferase family 2 protein compare
ABIE40_RS15920 -3.5 -1.1 50S ribosomal protein L31 compare
ABIE40_RS17590 -3.4 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS10155 -3.4 -2.1 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS08425 -3.4 -3.9 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS06050 -3.3 -7.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS05695 -3.2 -4.4 Do family serine endopeptidase compare
ABIE40_RS17000 -3.2 -6.8 ABC transporter ATP-binding protein compare
ABIE40_RS20445 -3.2 -1.4 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS00580 -3.2 -3.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS18880 -3.2 -12.9 UDP-glucose 4-epimerase GalE compare
ABIE40_RS09090 -3.1 -8.9 nitrogen regulation protein NR(I) compare
ABIE40_RS08935 -3.1 -4.0 RIP metalloprotease RseP compare
ABIE40_RS14785 -3.1 -4.6 hypothetical protein compare
ABIE40_RS14980 -3.1 -6.2 glycoside hydrolase family 16 protein compare
ABIE40_RS06720 -3.0 -2.5 transcriptional regulator NrdR compare
ABIE40_RS19480 -2.8 -4.2 DUF1402 family protein compare
ABIE40_RS17005 -2.8 -7.2 carbohydrate ABC transporter permease compare
ABIE40_RS09140 -2.8 -7.9 siroheme synthase CysG compare
ABIE40_RS11875 -2.8 -2.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS16985 -2.8 -11.5 FGGY-family carbohydrate kinase compare
ABIE40_RS16660 -2.7 -3.6 GTP-binding protein compare
ABIE40_RS10345 -2.6 -5.8 RNA polymerase-binding protein DksA compare
ABIE40_RS08645 -2.6 -6.7 LL-diaminopimelate aminotransferase compare
ABIE40_RS05660 -2.5 -2.9 response regulator transcription factor compare
ABIE40_RS18055 -2.5 -4.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS19310 -2.5 -5.0 fumarylacetoacetate hydrolase family protein compare
ABIE40_RS09170 -2.5 -4.7 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS11365 -2.4 -6.3 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
ABIE40_RS16655 -2.4 -6.2 creatininase family protein compare
ABIE40_RS01765 -2.4 -6.2 [protein-PII] uridylyltransferase compare
ABIE40_RS19365 -2.4 -3.5 double-strand break repair protein AddB compare
ABIE40_RS28370 -2.4 -0.9 oxidoreductase compare
ABIE40_RS19360 -2.3 -4.5 double-strand break repair helicase AddA compare
ABIE40_RS29110 -2.3 -2.2 GFA family protein compare
ABIE40_RS16210 -2.3 -8.4 homospermidine synthase compare
ABIE40_RS06730 -2.3 -4.4 riboflavin synthase compare
ABIE40_RS14955 -2.3 -8.6 sugar transferase compare
ABIE40_RS28600 -2.2 -1.2 FAD-dependent oxidoreductase compare
ABIE40_RS16665 -2.2 -7.8 WD40 repeat domain-containing protein compare
ABIE40_RS00340 -2.1 -3.6 30S ribosome-binding factor RbfA compare
ABIE40_RS01135 -2.1 -0.9 50S ribosomal protein L20 compare
ABIE40_RS05155 -2.1 -3.5 DUF5330 domain-containing protein compare
ABIE40_RS02235 -2.0 -9.5 altronate dehydratase family protein compare
ABIE40_RS04470 -2.0 -11.8 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS00935 -2.0 -5.5 ABC transporter substrate-binding protein compare
ABIE40_RS11960 -2.0 -2.3 energy-dependent translational throttle protein EttA compare
ABIE40_RS18300 -2.0 -10.0 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS19700 -2.0 -3.5 MBL fold metallo-hydrolase compare
ABIE40_RS04465 -2.0 -9.5 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS15345 -1.9 -8.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS04475 -1.9 -8.6 phosphoadenylyl-sulfate reductase compare
ABIE40_RS13120 -1.9 -7.6 cytochrome c1 compare
ABIE40_RS18640 -1.9 -8.0 M48 family metalloprotease compare
ABIE40_RS19375 -1.9 -3.8 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
ABIE40_RS09980 -1.9 -2.7 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS16390 -1.9 -1.2 hypothetical protein compare
ABIE40_RS11020 -1.8 -9.6 substrate-binding domain-containing protein compare
ABIE40_RS28485 -1.8 -1.8 hypothetical protein compare
ABIE40_RS05685 -1.8 -8.3 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS29160 -1.8 -1.5 hypothetical protein compare
ABIE40_RS13130 -1.8 -6.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS24490 -1.8 -1.3 flavin reductase compare
ABIE40_RS13125 -1.7 -9.3 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS00725 -1.7 -3.6 DNA cytosine methyltransferase compare
ABIE40_RS17515 -1.7 -5.0 TlpA disulfide reductase family protein compare
ABIE40_RS01705 -1.7 -8.2 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS08140 -1.7 -9.3 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS12360 -1.7 -9.1 DUF5131 family protein compare
ABIE40_RS14985 -1.7 -1.6 glycosyltransferase compare
ABIE40_RS18290 -1.7 -8.6 heme ABC transporter permease compare
ABIE40_RS08970 -1.6 -6.1 citrate synthase compare
ABIE40_RS09540 -1.6 -3.5 peptidylprolyl isomerase compare
ABIE40_RS30225 -1.6 -2.2 hypothetical protein compare
ABIE40_RS01055 -1.6 -4.2 translation elongation factor 4 compare
ABIE40_RS05680 -1.6 -6.3 cytochrome c maturation protein CcmE compare
ABIE40_RS24440 -1.6 -7.5 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS16170 -1.6 -1.9 DUF882 domain-containing protein compare
ABIE40_RS26855 -1.6 -1.5 hypothetical protein compare
ABIE40_RS06265 -1.6 -1.2 SDR family NAD(P)-dependent oxidoreductase compare
ABIE40_RS15730 -1.6 -2.0 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS00960 -1.5 -2.7 formyltetrahydrofolate deformylase compare
ABIE40_RS04070 -1.5 -4.6 heme o synthase compare
ABIE40_RS04060 -1.5 -7.8 cytochrome c oxidase subunit II compare
ABIE40_RS07200 -1.5 -1.9 NADH-quinone oxidoreductase subunit E compare
ABIE40_RS28765 -1.5 -1.6 chemotaxis protein CheX compare
ABIE40_RS10390 -1.5 -1.4 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS10200 -1.5 -1.4 Grx4 family monothiol glutaredoxin compare
ABIE40_RS30285 -1.4 -0.8 co-chaperone GroES compare
ABIE40_RS18285 -1.4 -5.4 heme exporter protein CcmB compare
ABIE40_RS05670 -1.4 -3.8 membrane protein compare
ABIE40_RS18735 -1.4 -5.0 TetR/AcrR family transcriptional regulator compare
ABIE40_RS01930 -1.4 -0.9 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS04820 -1.4 -1.7 TetR family transcriptional regulator compare
ABIE40_RS05995 -1.4 -7.3 MurR/RpiR family transcriptional regulator compare
ABIE40_RS09145 -1.4 -3.3 DUF2849 domain-containing protein compare
ABIE40_RS18685 -1.4 -2.5 beta-ketoacyl-ACP reductase compare
ABIE40_RS06915 -1.4 -7.4 COX15/CtaA family protein compare
ABIE40_RS10935 -1.4 -2.3 Fur family transcriptional regulator compare
ABIE40_RS09720 -1.4 -3.0 GTP cyclohydrolase I FolE compare
ABIE40_RS26865 -1.4 -2.2 hypothetical protein compare
ABIE40_RS02305 -1.3 -3.4 phosphate signaling complex protein PhoU compare
ABIE40_RS07335 -1.3 -1.1 50S ribosomal protein L33 compare
ABIE40_RS04065 -1.3 -7.3 cytochrome c oxidase subunit I compare
ABIE40_RS06645 -1.3 -1.7 hypothetical protein compare
ABIE40_RS03320 -1.3 -1.4 hypothetical protein compare
ABIE40_RS28815 -1.3 -3.7 GNAT family N-acetyltransferase compare
ABIE40_RS20315 -1.3 -1.0 type II toxin-antitoxin system VapB family antitoxin compare
ABIE40_RS07320 -1.3 -1.4 DUF3572 domain-containing protein compare
ABIE40_RS05690 -1.3 -3.1 cytochrome c-type biogenesis protein compare
ABIE40_RS19795 -1.3 -3.6 cyclic nucleotide-binding domain-containing protein compare
ABIE40_RS19385 -1.2 -5.1 adenosylhomocysteinase compare
ABIE40_RS18775 -1.2 -8.7 pyruvate carboxylase compare
ABIE40_RS07270 -1.2 -4.3 DUF1467 family protein compare
ABIE40_RS06725 -1.2 -3.6 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS05665 -1.2 -1.8 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS09800 -1.2 -3.2 MerR family DNA-binding transcriptional regulator compare
ABIE40_RS26805 -1.2 -1.2 chaperone modulator CbpM compare
ABIE40_RS12115 -1.2 -1.8 GntR family transcriptional regulator compare
ABIE40_RS23000 -1.2 -3.4 TetR/AcrR family transcriptional regulator compare
ABIE40_RS16060 -1.2 -2.1 DUF465 domain-containing protein compare
ABIE40_RS10850 -1.2 -2.8 excinuclease ABC subunit UvrB compare
ABIE40_RS23485 -1.2 -1.3 amino acid ABC transporter ATP-binding protein compare
ABIE40_RS07475 -1.2 -1.6 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium Formate in Rhizobium sp. OAE497

For carbon source Sodium Formate across organisms