Experiment set1IT039 for Pseudomonas sp. S08-1

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
OH686_13885 -5.5 -12.3 argininosuccinate lyase compare
OH686_13600 -4.8 -16.2 N-acetylglutamate kinase compare
OH686_15135 -4.8 -6.5 Anthranilate phosphoribosyltransferase compare
OH686_15195 -4.7 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_00475 -4.6 -15.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_14390 -4.4 -16.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
OH686_15125 -4.4 -21.9 anthranilate synthase component I compare
OH686_21970 -4.4 -3.0 L,D-transpeptidase compare
OH686_15140 -4.4 -21.0 Indole-3-glycerol phosphate synthase compare
OH686_04475 -4.3 -8.2 3-isopropylmalate dehydratase small subunit compare
OH686_10820 -4.3 -16.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_10160 -4.2 -9.8 Phosphoribosyl-AMP cyclohydrolase compare
OH686_14435 -4.2 -23.7 Glycosyl transferase, group 1 family protein compare
OH686_12430 -4.2 -18.3 tryptophan synthase, alpha subunit compare
OH686_10405 -4.2 -18.5 malate synthase G compare
OH686_16305 -4.1 -6.9 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_14595 -4.1 -8.2 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_12425 -4.1 -16.0 tryptophan synthase, beta subunit compare
OH686_11005 -4.0 -13.4 methionine biosynthesis protein MetW compare
OH686_04470 -3.8 -18.6 3-isopropylmalate dehydrogenase compare
OH686_03930 -3.8 -16.1 argininosuccinate synthase compare
OH686_10020 -3.7 -8.0 Shikimate kinase I compare
OH686_11000 -3.7 -17.2 homoserine O-acetyltransferase compare
OH686_04115 -3.7 -2.5 hypothetical protein compare
OH686_14100 -3.6 -19.1 dihydroxy-acid dehydratase compare
OH686_08130 -3.6 -20.7 acetolactate synthase, large subunit, biosynthetic type compare
OH686_09470 -3.6 -3.5 RNA chaperone Hfq compare
OH686_14590 -3.6 -14.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_04445 -3.6 -13.5 Phosphoribosylanthranilate isomerase compare
OH686_07585 -3.6 -5.9 3-dehydroquinate dehydratase, type II compare
OH686_12485 -3.6 -7.2 Shikimate 5-dehydrogenase I alpha compare
OH686_22005 -3.5 -11.5 Soluble pyridine nucleotide transhydrogenase compare
OH686_08470 -3.5 -18.9 Histidinol dehydrogenase compare
OH686_20870 -3.5 -4.2 Chorismate mutase I / Prephenate dehydratase compare
OH686_11400 -3.5 -17.5 threonine ammonia-lyase, biosynthetic compare
OH686_09445 -3.5 -15.8 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_00170 -3.5 -21.1 Isocitrate lyase compare
OH686_21330 -3.5 -3.5 aspartate kinase, monofunctional class compare
OH686_13800 -3.5 -2.4 diaminopimelate decarboxylase compare
OH686_04480 -3.4 -11.2 3-isopropylmalate dehydratase large subunit compare
OH686_14385 -3.3 -14.2 UDP-N-acetylglucosamine 2-epimerase compare
OH686_13590 -3.3 -4.5 Orotate phosphoribosyltransferase compare
OH686_14645 -3.3 -10.5 Carboxyl-terminal protease compare
OH686_01780 -3.3 -5.0 L,D-transpeptidase compare
OH686_10980 -3.3 -4.9 pyrroline-5-carboxylate reductase compare
OH686_10005 -3.3 -24.8 Glutamate synthase [NADPH] large chain compare
OH686_09305 -3.3 -19.5 Septum-associated rare lipoprotein A compare
OH686_08115 -3.3 -12.3 ketol-acid reductoisomerase compare
OH686_08125 -3.2 -14.1 acetolactate synthase, small subunit compare
OH686_10000 -3.1 -17.7 Glutamate synthase [NADPH] small chain compare
OH686_08475 -3.1 -13.4 ATP phosphoribosyltransferase compare
OH686_09340 -3.1 -8.7 Gamma-glutamyl phosphate reductase compare
OH686_14575 -3.1 -6.8 Imidazoleglycerol-phosphate dehydratase compare
OH686_04415 -3.1 -14.7 O-succinylhomoserine sulfhydrylase compare
OH686_17100 -3.1 -2.1 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_14285 -3.1 -15.4 Thiazole synthase compare
OH686_11280 -3.1 -7.4 D-3-phosphoglycerate dehydrogenase compare
OH686_08465 -3.1 -16.1 histidinol-phosphate transaminase compare
OH686_18240 -3.1 -2.8 Two-component transcriptional response regulator, LuxR family compare
OH686_02735 -3.0 -6.4 Flagellar synthesis regulator FleN compare
OH686_17570 -2.8 -14.7 2-isopropylmalate synthase compare
OH686_07925 -2.8 -12.6 TPR domain protein compare
OH686_14280 -2.8 -9.6 thiamine biosynthesis protein ThiS compare
OH686_12075 -2.7 -1.9 Exodeoxyribonuclease V beta chain compare
OH686_17765 -2.7 -1.9 threonine synthase compare
OH686_07905 -2.7 -1.9 protein-(glutamine-N5) methyltransferase, release factor-specific compare
OH686_09190 -2.7 -11.8 Thiamin-phosphate pyrophosphorylase compare
OH686_08505 -2.7 -1.8 Phospholipid ABC transporter permease protein MlaE compare
OH686_08495 -2.7 -1.8 Phospholipid ABC transporter shuttle protein MlaC compare
OH686_11420 -2.6 -13.1 Phosphoserine phosphatase compare
OH686_09185 -2.6 -8.9 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_11120 -2.5 -12.4 amino-acid N-acetyltransferase compare
OH686_12545 -2.5 -2.9 Lipid A biosynthesis lauroyl acyltransferase compare
OH686_15885 -2.4 -18.0 phosphomethylpyrimidine synthase compare
OH686_07900 -2.4 -10.0 Molybdopterin-synthase adenylyltransferase compare
OH686_18985 -2.3 -16.1 hypothetical protein compare
OH686_18020 -2.3 -13.1 hypothetical protein compare
OH686_08500 -2.3 -2.2 outer membrane lipid asymmetry maintenance protein MlaD compare
OH686_14580 -2.3 -12.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_19595 -2.3 -13.0 Two-component system sensor histidine kinase compare
OH686_15625 -2.3 -11.1 dTDP-4-dehydrorhamnose reductase compare
OH686_22720 -2.3 -2.2 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
OH686_09505 -2.2 -4.1 3'-to-5' oligoribonuclease (orn) compare
OH686_08510 -2.2 -2.6 Phospholipid ABC transporter ATP-binding protein MlaF compare
OH686_21290 -2.2 -7.5 Succinylornithine transaminase compare
OH686_18180 -2.1 -2.4 Murein hydrolase activator NlpD compare
OH686_20060 -2.0 -2.4 HtrA protease/chaperone protein compare
OH686_13585 -2.0 -12.1 Exodeoxyribonuclease III compare
OH686_21965 -2.0 -2.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
OH686_00120 -2.0 -3.4 NADH-ubiquinone oxidoreductase chain I compare
OH686_11060 -2.0 -7.0 phosphoenolpyruvate carboxykinase (ATP) compare
OH686_08565 -1.9 -1.5 Phosphocarrier protein, nitrogen regulation associated compare
OH686_09310 -1.9 -11.7 lytic murein transglycosylase B compare
OH686_20895 -1.9 -3.9 integration host factor, beta subunit compare
OH686_13550 -1.9 -2.7 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II compare
OH686_09625 -1.9 -8.9 hypothetical protein compare
OH686_12250 -1.9 -6.9 Zinc ABC transporter, permease protein ZnuB compare
OH686_22870 -1.8 -3.1 integration host factor, alpha subunit compare
OH686_16520 -1.8 -10.6 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_19775 -1.8 -3.8 septum site-determining protein MinC compare
OH686_09560 -1.8 -2.6 HAMP domain protein compare
OH686_22675 -1.8 -9.6 Heavy metal sensor histidine kinase compare
OH686_17760 -1.7 -2.8 Homoserine dehydrogenase compare
OH686_18990 -1.7 -2.2 phosphoribosylglycinamide formyltransferase compare
OH686_10165 -1.7 -5.7 Phosphoribosyl-ATP pyrophosphatase compare
OH686_14420 -1.7 -8.4 hypothetical protein compare
OH686_11225 -1.7 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
OH686_13205 -1.7 -13.9 oxaloacetate decarboxylase alpha subunit compare
OH686_09205 -1.7 -9.1 TPR repeat, SEL1 subfamily compare
OH686_12080 -1.6 -4.4 exodeoxyribonuclease V, gamma subunit compare
OH686_22875 -1.6 -4.4 Transcriptional regulator, MerR family compare
OH686_01625 -1.6 -3.0 Nonspecific porin and structural outer membrane protein OprF compare
OH686_00235 -1.5 -9.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OH686_13200 -1.5 -12.1 acetyl-CoA carboxylase, biotin carboxylase subunit compare
OH686_09555 -1.5 -10.3 phosphoserine phosphatase SerB compare
OH686_21295 -1.5 -5.1 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_20435 -1.5 -1.9 monothiol glutaredoxin, Grx4 family compare
OH686_19190 -1.5 -9.7 quinolinate synthetase complex, A subunit compare
OH686_17405 -1.5 -2.9 Predicted transmembrane protein compare
OH686_14425 -1.5 -10.7 glycosyl transferase, group 1 family protein compare
OH686_09055 -1.5 -2.8 Transcriptional regulator, AcrR family compare
OH686_21570 -1.4 -2.7 Phage recombination protein NinG compare
OH686_22625 -1.4 -1.9 tRNA-Gly compare
OH686_09475 -1.4 -4.7 tRNA dimethylallyltransferase compare
OH686_03335 -1.4 -10.5 methionine synthase compare
OH686_02995 -1.4 -2.3 flagellar biosynthesis anti-sigma factor FlgM compare
OH686_05080 -1.4 -3.2 ChlD component of cobalt chelatase compare
OH686_11110 -1.4 -5.0 glutamate--cysteine ligase compare
OH686_00095 -1.4 -6.2 NADH-ubiquinone oxidoreductase chain N compare
OH686_07980 -1.3 -2.1 hypothetical protein' product='hypothetical protein compare
OH686_13780 -1.3 -4.4 2-haloalkanoic acid dehalogenase compare
OH686_11185 -1.3 -10.1 Ferric iron ABC transporter, iron-binding protein compare
OH686_17065 -1.3 -1.9 chaperone protein DnaJ compare
OH686_09710 -1.3 -5.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OH686_21250 -1.3 -11.5 acetate--CoA ligase compare
OH686_03475 -1.3 -4.5 Oxidoreductase putative compare
OH686_22150 -1.3 -3.9 beta-ketoacyl-acyl-carrier-protein synthase II compare
OH686_08365 -1.3 -3.2 Uncharacterized protein YraP compare
OH686_09955 -1.3 -4.0 Lipoprotein compare
OH686_11430 -1.2 -11.1 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
OH686_01030 -1.2 -2.2 ABC-type siderophore export system, fused ATPase and permease components compare
OH686_17525 -1.2 -2.6 Cytoskeleton protein RodZ compare
OH686_00840 -1.2 -7.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit compare
OH686_19770 -1.2 -3.6 septum site-determining protein MinD compare
OH686_22690 -1.2 -9.1 Multicopper oxidase compare
OH686_18175 -1.2 -4.8 protein-L-isoaspartate O-methyltransferase compare
OH686_00135 -1.2 -3.9 NADH oxidoreductase (quinone), F subunit compare
OH686_12195 -1.2 -2.8 Periplasmic thiol:disulfide interchange protein DsbA compare
OH686_00150 -1.2 -4.6 NADH-ubiquinone oxidoreductase chain B compare
OH686_18680 -1.1 -3.9 peroxiredoxin compare
OH686_00125 -1.1 -2.5 NADH-ubiquinone oxidoreductase chain H compare
OH686_00850 -1.1 -6.6 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
OH686_13510 -1.1 -4.8 Hydrogen peroxide-inducible genes activator compare
OH686_22695 -1.1 -7.5 Copper resistance protein B compare
OH686_16115 -1.1 -1.2 hypothetical protein' product='hypothetical protein compare
OH686_20405 -1.1 -5.0 ornithine carbamoyltransferase compare
OH686_17715 -1.1 -3.3 Inner membrane protein YpjD compare
OH686_11180 -1.1 -7.4 Ferric iron ABC transporter, permease protein compare
OH686_08200 -1.1 -9.2 AmpG permease compare
OH686_00140 -1.1 -3.1 NADH-ubiquinone oxidoreductase chain E compare
OH686_02195 -1.1 -1.8 cytochrome c oxidase, cbb3-type, subunit II compare
OH686_03640 -1.1 -1.8 ATP-dependent Clp protease, ATP-binding subunit ClpX compare
OH686_01680 -1.0 -3.1 2-methylisocitrate dehydratase, Fe/S-dependent compare
OH686_19455 -1.0 -1.0 Phage protein (ACLAME 691) compare
OH686_00130 -1.0 -4.2 NADH dehydrogenase (quinone), G subunit compare
OH686_01635 -1.0 -3.6 CmpX compare
OH686_04045 -1.0 -1.8 hypothetical protein compare
OH686_21975 -1.0 -3.1 beta-N-acetylglucosaminidase compare
OH686_10235 -1.0 -1.5 hypothetical protein compare
OH686_17385 -1.0 -5.7 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
OH686_11205 -1.0 -8.0 Xaa-Pro aminopeptidase compare
OH686_03710 -1.0 -6.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
OH686_22680 -1.0 -4.4 Copper-sensing two-component system response regulator CusR compare
OH686_17740 -1.0 -1.6 ribosomal protein L19 compare
OH686_08235 -1.0 -4.8 Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) / Thiazole tautomerase TenI-like domain compare
OH686_15205 -1.0 -6.3 Anhydro-N-acetylmuramic acid kinase compare
OH686_00100 -1.0 -3.6 NADH-ubiquinone oxidoreductase chain M compare
OH686_00145 -1.0 -5.1 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D compare
OH686_19125 -1.0 -4.0 crossover junction endodeoxyribonuclease RuvC compare
OH686_00845 -1.0 -3.6 Methylglutaconyl-CoA hydratase compare
OH686_19135 -0.9 -4.4 Holliday junction DNA helicase RuvB compare
OH686_12235 -0.9 -3.0 Zinc ABC transporter, substrate-binding protein ZnuA compare
OH686_09800 -0.9 -8.0 Mechanosensitive channel MscK compare
OH686_21280 -0.9 -2.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
OH686_20040 -0.9 -7.7 L-aspartate oxidase compare
OH686_17020 -0.9 -7.3 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
OH686_04520 -0.9 -3.4 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_19170 -0.9 -5.1 tol-pal system protein YbgF compare
OH686_11275 -0.9 -4.2 Exopolyphosphatase compare
OH686_10055 -0.9 -7.9 Multimodular transpeptidase-transglycosylase compare
OH686_07395 -0.9 -5.6 copper-translocating P-type ATPase compare
OH686_04790 -0.9 -4.5 OmpA family protein compare
OH686_22460 -0.9 -1.8 hypothetical protein compare
OH686_01700 -0.9 -3.3 hypothetical protein compare
OH686_06555 -0.8 -6.3 probable glucosyl transferase compare
OH686_10060 -0.8 -5.5 NADP-dependent malic enzyme compare
OH686_19185 -0.8 -1.0 tRNA-Lys compare
OH686_22685 -0.8 -5.2 Copper tolerance protein compare
OH686_20240 -0.8 -1.7 Uncharacterized protein, YkwD family compare
OH686_15060 -0.8 -4.9 Phosphotransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium acetate in Pseudomonas sp. S08-1

For carbon source Sodium acetate across organisms