Experiment set1IT039 for Escherichia coli BW25113

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Sodium succinate dibasic hexahydrate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
b4125 dcuS -3.9 -12.9 sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) compare
b4124 dcuR -3.8 -15.2 DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) compare
b3528 dctA -3.8 -14.4 C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) conserved
b0390 aroM -3.3 -11.2 hypothetical protein (NCBI) compare
b2587 kgtP -3.3 -8.4 alpha-ketoglutarate transporter (NCBI) compare
b1479 sfcA -3.2 -5.9 NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) compare
b0775 bioB -3.2 -6.3 biotin synthase (NCBI) compare
b3232 yhcM -2.9 -11.4 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare
b3423 glpR -2.6 -10.9 DNA-binding transcriptional repressor (NCBI) compare
b3403 pck -2.5 -8.4 phosphoenolpyruvate carboxykinase (NCBI) conserved
b3412 bioH -2.3 -8.6 carboxylesterase of pimeloyl-CoA synthesis (NCBI) compare
b3675 yidG -2.2 -8.2 predicted inner membrane protein (NCBI) compare
b3676 yidH -2.2 -5.1 conserved inner membrane protein (NCBI) compare
b0776 bioF -2.0 -6.4 8-amino-7-oxononanoate synthase (NCBI) compare
b0484 copA -2.0 -10.9 copper transporter (NCBI) compare
b0223 yafJ -1.9 -8.0 predicted amidotransfease (NCBI) compare
b0774 bioA -1.9 -5.5 adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) conserved
b2151 galS -1.8 -6.6 DNA-binding transcriptional repressor (NCBI) conserved
b1854 pykA -1.7 -6.4 pyruvate kinase (NCBI) compare
b2463 maeB -1.6 -6.3 malic enzyme (NCBI) conserved
b1844 exoX -1.6 -5.1 exodeoxyribonuclease X (NCBI) compare
b3807 cyaY -1.5 -6.6 frataxin-like protein (NCBI) compare
b3601 mtlR -1.5 -6.6 DNA-binding repressor (NCBI) compare
b1584 speG -1.4 -6.4 spermidine N1-acetyltransferase (NCBI) compare
b4054 tyrB -1.2 -7.3 tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) compare
b0563 tfaX -1.1 -6.1 DLP12 prophage; predicted protein (RefSeq) compare
b2148 mglC -1.0 -6.5 beta-methylgalactoside transporter inner membrane component (NCBI) conserved
b2812 ygdL +1.0 6.6 hypothetical protein (NCBI) compare
b4014 aceB +1.1 5.2 malate synthase (NCBI) compare
b1606 folM +1.1 6.3 short chain dehydrogenase (NCBI) compare
b2810 csdA +1.1 5.4 cysteine sulfinate desulfinase (NCBI) compare
b1200 b1200 +1.3 6.4 putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) compare
b4015 aceA +1.3 8.2 isocitrate lyase (NCBI) compare
b1201 b1201 +1.4 7.2 putative sensor-type regulator (VIMSS) compare
b3926 glpK +1.4 12.2 glycerol kinase (NCBI) compare
b3248 yhdE +1.6 5.9 Maf-like protein (NCBI) compare
b1198 dhaM +1.7 5.7 fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) compare
b3740 gidB +1.7 13.7 glucose-inhibited division protein B (NCBI) compare
b1422 ydcI +1.9 9.5 putative transcriptional regulator LYSR-type (VIMSS) compare
b0382 yaiB +2.3 18.0 hypothetical protein (NCBI) compare
b3752 rbsK +2.8 11.0 ribokinase (NCBI) compare


Specific phenotypes for carbon source Sodium succinate dibasic hexahydrate across organisms