Experiment set1IT039 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0286 -6.5 -2.6 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2585 -5.2 -2.1 pyrroline-5-carboxylate reductase compare
EX28DRAFT_1123 -4.6 -8.3 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2531 -4.6 -5.1 endopeptidase La compare
EX28DRAFT_4155 -4.6 -4.5 DNA adenine methylase (dam) compare
EX28DRAFT_4341 -4.4 -3.2 Protein-disulfide isomerase compare
EX28DRAFT_4386 -4.3 -3.4 Signal transduction histidine kinase compare
EX28DRAFT_4419 -4.1 -1.9 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4153 -3.9 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4123 -3.9 -4.1 transcriptional regulator, DeoR family compare
EX28DRAFT_2851 -3.8 -3.7 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2774 -3.7 -9.9 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2701 -3.7 -8.8 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4061 -3.7 -7.3 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_0331 -3.7 -3.4 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2118 -3.6 -2.9 arsenate reductase (glutaredoxin) compare
EX28DRAFT_1122 -3.6 -8.4 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_4418 -3.6 -6.7 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2117 -3.6 -13.5 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_0936 -3.5 -5.7 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0934 -3.5 -10.3 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_1124 -3.3 -12.6 sucrose-6-phosphate hydrolase compare
EX28DRAFT_2916 -3.3 -7.6 diaminopimelate decarboxylase compare
EX28DRAFT_1986 -3.2 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2548 -3.1 -6.2 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4015 -3.1 -4.2 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_2985 -3.1 -8.2 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2635 -3.1 -7.7 Fructose-2,6-bisphosphatase compare
EX28DRAFT_4421 -3.1 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2252 -3.0 -2.0 TolA protein compare
EX28DRAFT_3224 -3.0 -4.0 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_0932 -2.9 -4.3 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0327 -2.9 -7.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_4158 -2.9 -4.9 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_0091 -2.9 -1.0 hypothetical protein compare
EX28DRAFT_3898 -2.9 -2.1 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_3614 -2.8 -7.4 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2945 -2.8 -2.1 tyrosine recombinase XerD compare
EX28DRAFT_3401 -2.8 -1.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0536 -2.8 -1.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_4120 -2.7 -4.9 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_0330 -2.7 -3.8 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2846 -2.7 -6.3 adenylyl-sulfate kinase compare
EX28DRAFT_0534 -2.7 -4.1 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0533 -2.7 -3.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_3667 -2.7 -4.8 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_4422 -2.6 -5.6 argininosuccinate lyase compare
EX28DRAFT_0538 -2.6 -5.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_2958 -2.6 -1.9 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2702 -2.6 -8.1 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0111 -2.6 -2.0 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0166 -2.5 -8.0 polyphosphate kinase 1 compare
EX28DRAFT_2917 -2.5 -4.3 Transcriptional regulator compare
EX28DRAFT_0333 -2.5 -7.1 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0328 -2.4 -1.9 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3675 -2.4 -8.9 transcriptional regulator, LacI family compare
EX28DRAFT_4271 -2.4 -1.0 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0933 -2.4 -11.5 tryptophan synthase, beta subunit compare
EX28DRAFT_2027 -2.4 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2650 -2.4 -4.7 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_0321 -2.4 -1.1 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_4383 -2.4 -11.6 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_0537 -2.3 -7.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_4493 -2.3 -4.0 Transcriptional regulator compare
EX28DRAFT_0935 -2.3 -5.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0322 -2.3 -10.1 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_3645 -2.3 -4.5 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2651 -2.3 -5.2 glutamate 5-kinase compare
EX28DRAFT_3297 -2.3 -6.4 ribonuclease, Rne/Rng family compare
EX28DRAFT_2265 -2.2 -0.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2043 -2.2 -7.7 transcriptional regulator, AsnC family compare
EX28DRAFT_0228 -2.2 -1.5 tRNA compare
EX28DRAFT_0125 -2.2 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_3089 -2.2 -1.2 Transcriptional regulators compare
EX28DRAFT_0108 -2.2 -1.2 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0329 -2.2 -7.5 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0292 -2.2 -1.1 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2893 -2.1 -4.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_2852 -2.1 -7.2 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_3087 -2.1 -8.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
EX28DRAFT_1128 -2.0 -1.7 hypothetical protein compare
EX28DRAFT_4170 -2.0 -7.7 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0323 -2.0 -3.8 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0046 -2.0 -2.2 shikimate dehydrogenase compare
EX28DRAFT_3376 -2.0 -8.3 ribonuclease R compare
EX28DRAFT_4212 -2.0 -1.0 Acetyltransferase (GNAT) family compare
EX28DRAFT_0332 -2.0 -8.5 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2853 -2.0 -6.4 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0535 -2.0 -3.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4420 -1.9 -0.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_3613 -1.9 -3.3 RNA compare
EX28DRAFT_0539 -1.9 -5.4 histidinol dehydrogenase compare
EX28DRAFT_4121 -1.9 -1.7 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4446 -1.8 -5.7 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2250 -1.8 -2.3 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0540 -1.8 -5.1 ATP phosphoribosyltransferase compare
EX28DRAFT_0593 -1.8 -10.0 DNA-methyltransferase (dcm) compare
EX28DRAFT_4436 -1.8 -4.6 Transcriptional regulator compare
EX28DRAFT_3070 -1.8 -1.9 Predicted phosphohydrolases compare
EX28DRAFT_4437 -1.8 -4.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0970 -1.8 -2.1 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3081 -1.7 -10.3 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_0324 -1.7 -2.4 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_3461 -1.7 -2.6 ornithine carbamoyltransferase compare
EX28DRAFT_3710 -1.7 -5.7 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0325 -1.6 -4.9 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_4266 -1.6 -2.1 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_3079 -1.6 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2849 -1.6 -3.8 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_2848 -1.6 -7.3 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_3278 -1.6 -2.2 Glutathione S-transferase compare
EX28DRAFT_1692 -1.6 -1.2 Biofilm development protein YmgB/AriR compare
EX28DRAFT_3616 -1.6 -2.0 threonine synthase compare
EX28DRAFT_0068 -1.6 -1.4 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_0214 -1.5 -3.8 cysteine synthase A compare
EX28DRAFT_2864 -1.5 -6.0 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_2999 -1.5 -3.0 Fe-S cluster protector protein compare
EX28DRAFT_3369 -1.4 -1.2 RNA chaperone Hfq compare
EX28DRAFT_4300 -1.4 -1.5 Predicted membrane protein compare
EX28DRAFT_4297 -1.4 -1.4 cell division ATP-binding protein FtsE compare
EX28DRAFT_1650 -1.4 -1.8 ribonuclease T compare
EX28DRAFT_0529 -1.4 -3.8 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_4507 -1.4 -2.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0876 -1.4 -0.8 hypothetical protein compare
EX28DRAFT_1626 -1.3 -1.8 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_4018 -1.3 -2.0 Flavodoxins compare
EX28DRAFT_3668 -1.3 -6.0 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0362 -1.3 -4.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_4452 -1.3 -2.1 thioredoxin compare
EX28DRAFT_0693 -1.3 -0.8 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0334 -1.3 -1.5 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2837 -1.3 -6.1 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_3669 -1.3 -5.1 3-isopropylmalate dehydrogenase compare
EX28DRAFT_4184 -1.3 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3729 -1.3 -4.7 pantoate--beta-alanine ligase compare
EX28DRAFT_0494 -1.3 -1.2 Protein-tyrosine-phosphatase compare
EX28DRAFT_2682 -1.2 -6.1 hydroxyacylglutathione hydrolase compare
EX28DRAFT_3302 -1.2 -7.7 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_3711 -1.2 -0.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3540 -1.2 -2.3 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_4156 -1.2 -1.6 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2169 -1.2 -5.0 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_1474 -1.2 -0.9 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_4397 -1.2 -4.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_2753 -1.2 -1.6 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2492 -1.2 -2.6 Protein of unknown function (DUF2496) compare
EX28DRAFT_3276 -1.1 -2.6 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_1252 -1.1 -1.0 TIGR00156 family protein compare
EX28DRAFT_0073 -1.1 -1.0 Negative regulator of sigma E activity compare
EX28DRAFT_2699 -1.1 -2.4 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2050 -1.1 -7.5 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_2904 -1.1 -8.4 phosphoenolpyruvate-protein phosphotransferase compare
EX28DRAFT_2847 -1.1 -6.1 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_2272 -1.1 -4.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_2474 -1.1 -3.3 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_3259 -1.0 -4.4 Predicted P-loop-containing kinase compare
EX28DRAFT_0948 -1.0 -1.1 hypothetical protein compare
EX28DRAFT_0778 -1.0 -0.8 hypothetical protein compare
EX28DRAFT_4459 -1.0 -5.0 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0167 -1.0 -1.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_1542 -1.0 -6.3 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_2277 -1.0 -1.7 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_4138 -1.0 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0440 -1.0 -5.0 ATPases involved in chromosome partitioning compare
EX28DRAFT_3507 -1.0 -1.0 Response regulator compare
EX28DRAFT_4152 -1.0 -0.9 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_2497 -1.0 -3.5 Biofilm formation regulator YbaJ compare
EX28DRAFT_2411 -1.0 -2.1 hypothetical protein compare
EX28DRAFT_0519 -1.0 -6.0 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_0305 -0.9 -3.0 Isopentenyldiphosphate isomerase compare
EX28DRAFT_4246 -0.9 -6.9 excinuclease ABC, A subunit compare
EX28DRAFT_0857 -0.9 -0.9 tRNA compare
EX28DRAFT_4077 -0.9 -0.9 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_1871 -0.9 -4.8 BssS protein family compare
EX28DRAFT_1623 -0.9 -2.5 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_0976 -0.9 -2.3 phage shock protein A (PspA) family protein compare
EX28DRAFT_3883 -0.9 -1.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_1785 -0.9 -1.4 Putative hemolysin compare
EX28DRAFT_0092 -0.9 -0.4 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_1839 -0.9 -3.1 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_3849 -0.9 -1.7 PTS system, mannitol-specific IIC component compare
EX28DRAFT_1308 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_0074 -0.9 -4.8 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_2724 -0.9 -1.3 RNA compare
EX28DRAFT_4157 -0.9 -3.6 2-phosphoglycolate phosphatase, prokaryotic compare
EX28DRAFT_3199 -0.9 -1.8 Predicted periplasmic or secreted lipoprotein compare
EX28DRAFT_4296 -0.9 -3.1 putative protein insertion permease FtsX compare
EX28DRAFT_2964 -0.9 -2.2 5,10-methenyltetrahydrofolate synthetase compare
EX28DRAFT_2211 -0.9 -5.7 Excinuclease ABC subunit B compare
EX28DRAFT_4461 -0.9 -2.6 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_1679 -0.9 -2.0 pyruvate kinase compare
EX28DRAFT_4544 -0.8 -0.3 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_1621 -0.8 -5.3 Haemolysin expression modulating protein compare
EX28DRAFT_3611 -0.8 -0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0272 -0.8 -0.9 phosphohistidine phosphatase, SixA compare
EX28DRAFT_1039 -0.8 -1.3 Sortase and related acyltransferases compare
EX28DRAFT_3033 -0.8 -3.2 transcriptional regulator, TetR family compare
EX28DRAFT_1493 -0.8 -2.0 Transcriptional regulator/sugar kinase compare
EX28DRAFT_4063 -0.8 -4.6 Zn-dependent oligopeptidases compare
EX28DRAFT_2723 -0.8 -0.9 SsrA-binding protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms