Experiment set1IT039 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_4003 +6.5 27.4 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_3643 +4.0 12.5 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0350 +3.2 26.4 glycerol-3-phosphate transporter compare
EX28DRAFT_1125 +2.5 18.7 D-fructose-responsive transcription factor compare
EX28DRAFT_3725 +2.3 18.2 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
EX28DRAFT_3644 +2.3 3.9 Uncharacterized protein affecting Mg2+/Co2+ transport compare
EX28DRAFT_3724 +2.2 12.3 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_4269 +1.9 3.4 SOS regulatory protein LexA compare
EX28DRAFT_4399 +1.5 9.5 glycerol kinase compare
EX28DRAFT_2578 +1.5 9.9 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2866 +1.5 12.6 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_4405 +1.3 1.4 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0921 +1.2 1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0633 +1.2 11.3 two component transcriptional regulator, LuxR family compare
EX28DRAFT_0940 +1.2 6.7 pseudouridine synthase compare
EX28DRAFT_4324 +1.0 1.2 probable addiction module antidote protein compare
EX28DRAFT_2574 +1.0 4.0 phosphate regulon sensor kinase PhoR compare
EX28DRAFT_1293 +1.0 1.1 hypothetical protein compare
EX28DRAFT_1719 +0.9 0.7 integration host factor, alpha subunit compare
EX28DRAFT_2519 +0.9 2.0 nitrogen regulatory protein P-II family compare
EX28DRAFT_0351 +0.9 4.0 Glycerophosphoryl diester phosphodiesterase compare
EX28DRAFT_4490 +0.9 4.7 Lysophospholipase compare
EX28DRAFT_1894 +0.9 2.1 Uncharacterized component of anaerobic dehydrogenases compare
EX28DRAFT_1367 +0.9 1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3958 +0.9 2.0 hypothetical protein compare
EX28DRAFT_3345 +0.9 1.4 Predicted small secreted protein compare
EX28DRAFT_4286 +0.8 3.8 ABC-type branched-chain amino acid transport systems, ATPase component compare
EX28DRAFT_3583 +0.8 2.8 peptide chain release factor 3 compare
EX28DRAFT_3282 +0.8 1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1131 +0.8 2.0 hypothetical protein compare
EX28DRAFT_0687 +0.8 2.7 tRNA (cmo5U34)-methyltransferase compare
EX28DRAFT_3419 +0.8 6.0 Fructose-1,6-bisphosphatase compare
EX28DRAFT_2442 +0.8 5.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_4039 +0.8 5.7 cellulose synthase operon protein YhjU compare
EX28DRAFT_0127 +0.8 3.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0528 +0.7 1.7 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_0730 +0.7 0.8 YobH-like protein compare
EX28DRAFT_0521 +0.7 2.1 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3574 +0.7 0.9 Protein of unknown function (DUF1435) compare
EX28DRAFT_4044 +0.7 6.1 cellulose synthase catalytic subunit (UDP-forming) compare
EX28DRAFT_1053 +0.7 2.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
EX28DRAFT_1056 +0.7 1.3 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_3893 +0.7 1.4 ribonuclease PH compare
EX28DRAFT_0882 +0.7 2.9 hypothetical protein compare
EX28DRAFT_2995 +0.7 2.9 Protein of unknown function (DUF2884) compare
EX28DRAFT_2375 +0.7 2.7 ABC-type Fe2+-enterobactin transport system, periplasmic component compare
EX28DRAFT_4208 +0.7 4.3 phosphonate C-P lyase system protein PhnK compare
EX28DRAFT_0358 +0.7 3.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_3214 +0.7 2.6 RNA compare
EX28DRAFT_2298 +0.7 4.7 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_4350 +0.7 0.5 nitrogen regulation protein NR(I) compare
EX28DRAFT_1065 +0.7 2.3 Predicted transcriptional regulators compare
EX28DRAFT_1497 +0.7 0.8 hypothetical protein compare
EX28DRAFT_4362 +0.7 3.8 transcriptional regulator, DeoR family compare
EX28DRAFT_0901 +0.7 1.2 hypothetical protein compare
EX28DRAFT_4045 +0.7 4.5 Bacterial cellulose synthase subunit compare
EX28DRAFT_3923 +0.7 3.1 Predicted transcriptional regulators compare
EX28DRAFT_0579 +0.7 1.0 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_1239 +0.7 0.9 hypothetical protein compare
EX28DRAFT_3311 +0.7 1.0 ribosomal protein L11 methyltransferase compare
EX28DRAFT_0925 +0.6 5.3 Uncharacterised protein family (UPF0259) compare
EX28DRAFT_3425 +0.6 3.4 conserved hypothetical protein EF_0830/AHA_3911 compare
EX28DRAFT_2873 +0.6 0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1303 +0.6 1.0 hypothetical protein compare
EX28DRAFT_2441 +0.6 4.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_3190 +0.6 1.9 Phosphotransferase system, mannose/fructose-specific component IIA compare
EX28DRAFT_4173 +0.6 1.1 Predicted redox protein, regulator of disulfide bond formation compare
EX28DRAFT_0061 +0.6 2.0 Predicted periplasmic lipoprotein compare
EX28DRAFT_2033 +0.6 1.7 pyruvate formate-lyase 1-activating enzyme compare
EX28DRAFT_0129 +0.6 0.7 RNA compare
EX28DRAFT_0254 +0.6 1.4 hypothetical protein compare
EX28DRAFT_4441 +0.6 1.2 acetolactate synthase, small subunit (EC 2.2.1.6) compare
EX28DRAFT_4042 +0.6 1.2 Protein of unknown function (DUF2629) compare
EX28DRAFT_0179 +0.6 4.0 Predicted permease compare
EX28DRAFT_2464 +0.6 2.1 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
EX28DRAFT_4043 +0.6 3.2 cellulose synthase operon protein YhjQ compare
EX28DRAFT_2738 +0.6 2.1 ADP-ribose pyrophosphatase compare
EX28DRAFT_3110 +0.6 2.5 phage contractile tail tube protein, P2 family compare
EX28DRAFT_3687 +0.6 0.6 D-alanine--D-alanine ligase compare
EX28DRAFT_2378 +0.6 1.0 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_2629 +0.6 1.4 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_3492 +0.6 1.5 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_0034 +0.6 0.7 Domain of unknown function (DUF1992) compare
EX28DRAFT_3498 +0.6 1.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
EX28DRAFT_4347 +0.6 0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0395 +0.6 2.6 1-phosphofructokinase compare
EX28DRAFT_0374 +0.6 0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3166 +0.6 1.4 Uncharacterized conserved protein compare
EX28DRAFT_0977 +0.6 1.1 phage shock protein B compare
EX28DRAFT_1522 +0.6 2.2 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
EX28DRAFT_2655 +0.6 2.2 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins compare
EX28DRAFT_2299 +0.6 4.0 Transcriptional regulator/sugar kinase compare
EX28DRAFT_1037 +0.6 1.2 Protein of unknown function (DUF2526) compare
EX28DRAFT_0631 +0.6 4.0 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_0865 +0.6 4.1 Alcohol dehydrogenase, class IV compare
EX28DRAFT_4047 +0.5 4.6 Tetratricopeptide repeat/Cellulose synthase operon protein C C-terminus (BCSC_C)/TPR repeat compare
EX28DRAFT_4040 +0.5 3.1 celllulose biosynthesis operon protein BcsF/YhjT compare
EX28DRAFT_3861 +0.5 2.2 Glutaredoxin, GrxC family compare
EX28DRAFT_2348 +0.5 0.5 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_0761 +0.5 3.4 Uncharacterized conserved protein compare
EX28DRAFT_3778 +0.5 1.3 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_1295 +0.5 1.3 Protein of unknown function (DUF2570) compare
EX28DRAFT_1716 +0.5 1.9 ABC-type cobalamin transport system, ATPase component compare
EX28DRAFT_3947 +0.5 1.3 RNA compare
EX28DRAFT_1855 +0.5 2.1 flagellar hook-basal body protein compare
EX28DRAFT_1862 +0.5 1.4 Flagellar biosynthesis/type III secretory pathway chaperone compare
EX28DRAFT_1870 +0.5 1.4 DinI-like family compare
EX28DRAFT_0712 +0.5 0.4 DNA polymerase III, theta subunit compare
EX28DRAFT_2760 +0.5 2.1 ribonucleoside-diphosphate reductase 2, operon protein nrdI compare
EX28DRAFT_2541 +0.5 0.9 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0416 +0.5 1.2 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_2326 +0.5 1.7 ribosome silencing factor RsfS/YbeB/iojap compare
EX28DRAFT_2576 +0.5 3.8 Exodeoxyribonuclease I subunit D (EC 3.1.11.1) compare
EX28DRAFT_4214 +0.5 1.5 hypothetical protein compare
EX28DRAFT_2547 +0.5 0.9 DJ-1 family protein compare
EX28DRAFT_4318 +0.5 1.7 Glucose-6-phosphate isomerase compare
EX28DRAFT_0886 +0.5 1.6 hypothetical protein compare
EX28DRAFT_1694 +0.5 1.4 hypothetical protein compare
EX28DRAFT_0864 +0.5 1.9 thymidine kinase (EC 2.7.1.21) compare
EX28DRAFT_1412 +0.5 1.2 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_0160 +0.5 1.0 hypothetical protein compare
EX28DRAFT_2624 +0.5 1.8 Phosphotransferase enzyme family compare
EX28DRAFT_2085 +0.5 1.1 Uncharacterized conserved protein compare
EX28DRAFT_3560 +0.5 2.8 Protein of unknown function (DUF2501) compare
EX28DRAFT_0686 +0.5 1.4 tRNA (mo5U34)-methyltransferase compare
EX28DRAFT_2268 +0.5 2.3 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_4133 +0.5 3.8 ferrous iron transporter FeoB compare
EX28DRAFT_2338 +0.5 2.1 protein CrcB compare
EX28DRAFT_4248 +0.5 1.4 secondary thiamine-phosphate synthase enzyme compare
EX28DRAFT_2491 +0.5 1.2 restart primosome assembly protein PriC compare
EX28DRAFT_0803 +0.5 1.4 Protein of avirulence locus involved in temperature-dependent protein secretion compare
EX28DRAFT_1610 +0.5 1.5 mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8) compare
EX28DRAFT_1277 +0.5 2.4 hypothetical protein compare
EX28DRAFT_4281 +0.5 1.5 Glycerophosphoryl diester phosphodiesterase compare
EX28DRAFT_0594 +0.5 0.5 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_2674 +0.5 1.9 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_4177 +0.5 3.2 ATPase components of ABC transporters with duplicated ATPase domains compare
EX28DRAFT_3383 +0.5 0.7 Alpha/beta hydrolase family compare
EX28DRAFT_2171 +0.5 3.8 Predicted membrane-associated, metal-dependent hydrolase compare
EX28DRAFT_3639 +0.5 1.6 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_0908 +0.5 0.8 phage tail protein, P2 protein I family compare
EX28DRAFT_0524 +0.5 1.9 hypothetical protein compare
EX28DRAFT_4041 +0.5 3.4 cellulose biosynthesis protein BcsE compare
EX28DRAFT_2192 +0.5 2.7 P pilus assembly protein, pilin FimA compare
EX28DRAFT_4085 +0.5 2.6 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_0058 +0.5 2.0 23S compare
EX28DRAFT_0261 +0.5 2.0 type VI secretion lipoprotein, VC_A0113 family compare
EX28DRAFT_4181 +0.5 1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_4267 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0145 +0.5 0.9 Protein of unknown function (DUF1641) compare
EX28DRAFT_3408 +0.4 1.8 Uncharacterized conserved protein compare
EX28DRAFT_2630 +0.4 1.1 hypothetical protein compare
EX28DRAFT_1202 +0.4 1.8 phenazine biosynthesis protein PhzF family compare
EX28DRAFT_1218 +0.4 0.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
EX28DRAFT_0441 +0.4 0.9 Acetyltransferases compare
EX28DRAFT_0895 +0.4 0.9 Phage small terminase subunit compare
EX28DRAFT_1375 +0.4 1.9 SnoaL-like domain compare
EX28DRAFT_1153 +0.4 1.7 5'-nucleotidase, lipoprotein e(P4) family compare
EX28DRAFT_3707 +0.4 3.0 Gamma-aminobutyrate permease and related permeases compare
EX28DRAFT_0177 +0.4 0.8 arsenate reductase (glutaredoxin) compare
EX28DRAFT_0900 +0.4 1.1 phage lysis regulatory protein, LysB family compare
EX28DRAFT_1581 +0.4 2.3 Lysis protein S compare
EX28DRAFT_2670 +0.4 2.6 Gamma-glutamyltransferase compare
EX28DRAFT_0914 +0.4 1.6 Phage P2 GpE compare
EX28DRAFT_2195 +0.4 1.9 transcriptional regulator, TetR family compare
EX28DRAFT_4400 +0.4 2.2 MIP family channel proteins compare
EX28DRAFT_0755 +0.4 2.1 ribonuclease D compare
EX28DRAFT_2697 +0.4 1.8 ribosomal subunit interface protein compare
EX28DRAFT_0804 +0.4 0.5 type VI secretion system lysozyme-like protein compare
EX28DRAFT_4134 +0.4 1.9 Fe2+ transport system protein A compare
EX28DRAFT_1549 +0.4 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_1687 +0.4 0.8 FeS assembly scaffold SufA compare
EX28DRAFT_0788 +0.4 2.1 type VI secretion protein, VC_A0114 family compare
EX28DRAFT_4221 +0.4 2.0 Sugar kinases, ribokinase family compare
EX28DRAFT_4073 +0.4 2.0 transcriptional regulator, IclR family compare
EX28DRAFT_2234 +0.4 2.2 ModE molybdate transport repressor domain/molybdenum-pterin binding domain compare
EX28DRAFT_2448 +0.4 2.8 P pilus assembly protein, pilin FimA compare
EX28DRAFT_1207 +0.4 1.0 MarB protein compare
EX28DRAFT_2178 +0.4 1.4 hypothetical protein compare
EX28DRAFT_2458 +0.4 1.7 hypothetical protein compare
EX28DRAFT_1816 +0.4 3.2 transcription-repair coupling factor (mfd) compare
EX28DRAFT_3187 +0.4 1.8 PTS system, mannose/fructose/sorbose family, IIB component compare
EX28DRAFT_2913 +0.4 2.6 Transcriptional regulators compare
EX28DRAFT_1728 +0.4 2.2 hexose kinase, 1-phosphofructokinase family compare
EX28DRAFT_0573 +0.4 1.5 Lysine/ornithine N-monooxygenase compare
EX28DRAFT_0888 +0.4 1.0 hypothetical protein compare
EX28DRAFT_1038 +0.4 0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0820 +0.4 1.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3344 +0.4 1.5 Predicted small secreted protein compare
EX28DRAFT_0471 +0.4 1.0 Sugar kinases, ribokinase family compare
EX28DRAFT_0570 +0.4 2.2 Putative translation initiation inhibitor, yjgF family compare
EX28DRAFT_2407 +0.4 1.8 hypothetical protein compare
EX28DRAFT_3130 +0.4 1.1 Protein of unknown function (DUF2732) compare
EX28DRAFT_2982 +0.4 1.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4131 +0.4 2.0 Protein of unknown function (DUF1471) compare
EX28DRAFT_3006 +0.4 0.5 citrate lyase acyl carrier protein compare
EX28DRAFT_0742 +0.4 1.7 PTS system, mannose/fructose/sorbose family, IIB component compare
EX28DRAFT_3462 +0.4 2.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1384 +0.4 0.8 Predicted ester cyclase compare
EX28DRAFT_4425 +0.4 1.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms