Experiment set1IT038 for Pseudomonas simiae WCS417

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -6.3 -5.6 isopropylmalate isomerase compare
PS417_01855 -6.3 -5.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -6.1 -7.3 3-isopropylmalate dehydrogenase compare
PS417_01565 -6.1 -4.7 imidazole glycerol phosphate synthase compare
PS417_00185 -6.0 -5.8 tryptophan synthase subunit beta compare
PS417_23545 -5.8 -5.6 gamma-glutamyl kinase compare
PS417_25720 -5.8 -10.4 anthranilate synthase component II compare
PS417_27040 -5.8 -5.4 3-phosphoglycerate dehydrogenase compare
PS417_01575 -5.7 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04415 -5.5 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08125 -5.4 -2.1 prephenate dehydratase compare
PS417_26740 -5.2 -16.5 homoserine acetyltransferase compare
PS417_23800 -5.1 -16.0 ketol-acid reductoisomerase compare
PS417_04420 -5.1 -14.0 histidinol dehydrogenase compare
PS417_18595 -5.0 -7.3 3-isopropylmalate dehydratase compare
PS417_24745 -5.0 -8.2 gamma-glutamyl phosphate reductase compare
PS417_23810 -4.9 -14.6 acetolactate synthase 3 catalytic subunit compare
PS417_02005 -4.9 -12.4 glutamate synthase compare
PS417_23805 -4.9 -8.7 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -4.8 -16.0 anthranilate synthase component I compare
PS417_18560 -4.7 -11.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_28220 -4.7 -3.9 LysR family transcriptional regulator compare
PS417_02510 -4.6 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01850 -4.5 -12.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26745 -4.3 -8.4 methionine biosynthesis protein MetW compare
PS417_16465 -4.3 -11.8 sirohydrochlorin ferrochelatase compare
PS417_02000 -4.3 -18.0 glutamate synthase compare
PS417_05595 -4.2 -10.5 ornithine carbamoyltransferase compare
PS417_27795 -4.1 -2.3 orotate phosphoribosyltransferase compare
PS417_12290 -4.1 -11.9 sulfite reductase compare
PS417_18530 -4.0 -6.3 O-succinylhomoserine sulfhydrylase compare
PS417_27195 -3.9 -2.1 N-acetylglutamate synthase compare
PS417_25710 -3.7 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_00180 -3.7 -5.6 tryptophan synthase subunit alpha compare
PS417_01580 -3.5 -1.6 imidazole glycerol phosphate synthase compare
PS417_23995 -3.4 -1.8 preprotein translocase subunit SecG compare
PS417_06375 -3.3 -1.8 deoxycytidine triphosphate deaminase compare
PS417_25715 -3.3 -5.2 anthranilate phosphoribosyltransferase compare
PS417_26730 -3.3 -2.5 pyrroline-5-carboxylate reductase compare
PS417_02415 -3.3 -6.6 phosphoserine phosphatase compare
PS417_20160 -3.1 -3.8 cysteine synthase compare
PS417_27835 -3.0 -13.9 endoribonuclease compare
PS417_23110 -3.0 -6.1 2-isopropylmalate synthase compare
PS417_12855 -3.0 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01570 -2.9 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26995 -2.9 -14.9 phosphoserine phosphatase compare
PS417_07640 -2.9 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20985 -2.8 -4.7 porin compare
PS417_26890 -2.7 -5.0 dihydroxy-acid dehydratase compare
PS417_01605 -2.5 -2.3 phosphoglycerate mutase compare
PS417_20125 -2.5 -6.9 phosphoribosylglycinamide formyltransferase compare
PS417_23770 -2.5 -4.5 exodeoxyribonuclease V subunit alpha compare
PS417_21705 -2.1 -8.9 arginine N-succinyltransferase compare
PS417_08205 -2.1 -7.1 acetyltransferase compare
PS417_01560 -1.9 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_20610 -1.8 -2.9 hypothetical protein compare
PS417_08195 -1.8 -11.3 hypothetical protein compare
PS417_24835 -1.8 -7.2 hypothetical protein compare
PS417_01710 -1.8 -6.4 histidine utilization repressor compare
PS417_08860 -1.8 -9.3 small component of pyruvate transporter (yjcH-like) (from data) conserved
PS417_27875 -1.8 -8.5 histidine kinase compare
PS417_24155 -1.8 -2.8 ATP-binding protein compare
PS417_21035 -1.7 -9.7 multidrug transporter compare
PS417_21125 -1.7 -9.4 phosphoadenosine phosphosulfate reductase compare
PS417_24295 -1.7 -10.1 carbon starvation protein A conserved
PS417_08865 -1.6 -12.6 large component of pyruvate transporter (actP-like) (from data) conserved
PS417_08225 -1.6 -5.8 acetolactate synthase compare
PS417_08230 -1.5 -3.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22115 -1.4 -4.4 transcriptional regulator compare
PS417_16990 -1.4 -6.6 acyl-CoA dehydrogenase compare
PS417_08200 -1.4 -3.4 hypothetical protein compare
PS417_26060 -1.4 -3.7 DNA polymerase III subunit epsilon compare
PS417_08245 -1.4 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_17505 -1.3 -5.3 LuxR family transcriptional regulator compare
PS417_23775 -1.3 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_22520 -1.3 -2.8 histidine kinase compare
PS417_27010 -1.3 -7.4 threonine dehydratase compare
PS417_08580 -1.3 -5.0 histidine kinase compare
PS417_24290 -1.3 -4.7 hypothetical protein conserved
PS417_21700 -1.2 -3.3 arginine N-succinyltransferase compare
PS417_27435 -1.2 -6.0 polyphosphate kinase compare
PS417_07170 -1.2 -5.0 hypothetical protein compare
PS417_20665 -1.2 -5.8 hypothetical protein compare
PS417_13800 -1.1 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_05840 -1.1 -4.0 LuxR family transcriptional regulator compare
PS417_13510 -1.1 -1.7 polyketide cyclase compare
PS417_04500 -1.1 -2.5 hypothetical protein compare
PS417_22570 -1.1 -1.1 H-NS histone compare
PS417_21425 -1.0 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_06200 -1.0 -4.4 protein-PII uridylyltransferase compare
PS417_26040 -1.0 -4.4 malate synthase compare
PS417_04585 -1.0 -2.2 hypothetical protein compare
PS417_21020 -1.0 -7.0 phosphoenolpyruvate synthase compare
PS417_11845 -1.0 -3.9 RpiR family transcriptional regulator compare
PS417_22445 -1.0 -3.3 ATP-dependent DNA helicase RuvB compare
PS417_21690 -0.9 -5.0 N-succinylarginine dihydrolase compare
PS417_03925 -0.9 -3.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_27870 -0.9 -2.9 ATP-dependent DNA helicase RecG compare
PS417_07560 -0.9 -2.0 universal stress protein UspA compare
PS417_20620 -0.9 -5.0 glycosyl transferase family 2 compare
PS417_04410 -0.9 -1.2 hypothetical protein compare
PS417_03560 -0.9 -2.0 GTP-binding protein compare
PS417_07595 -0.9 -2.9 PasA protein compare
PS417_14940 -0.9 -2.1 LysR family transcriptional regulator compare
PS417_04365 -0.9 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16490 -0.9 -2.6 cell division protein FtsK compare
PS417_02225 -0.9 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04875 -0.9 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00295 -0.9 -5.3 hypothetical protein compare
PS417_05570 -0.9 -2.6 DeoR faimly transcriptional regulator compare
PS417_00650 -0.9 -1.2 LysR family transcriptional regulator compare
PS417_23375 -0.9 -2.0 cytochrome C oxidase compare
PS417_27035 -0.9 -4.0 FAD-linked oxidase compare
PS417_09725 -0.8 -5.5 transporter compare
PS417_04270 -0.8 -5.5 ribonuclease G compare
PS417_09915 -0.8 -1.9 hypothetical protein compare
PS417_17415 -0.8 -5.1 histidine kinase compare
PS417_08220 -0.8 -0.8 epimerase compare
PS417_13205 -0.8 -1.5 isochorismate-pyruvate lyase compare
PS417_17780 -0.8 -1.1 Ais protein compare
PS417_28070 -0.8 -5.0 phosphate ABC transporter ATP-binding protein compare
PS417_10995 -0.8 -2.7 GntR family transcriptional regulator compare
PS417_24285 -0.8 -4.2 GTP-binding protein compare
PS417_10575 -0.8 -2.1 DNA alkylation repair protein compare
PS417_05695 -0.7 -3.7 transcriptional regulator compare
PS417_22385 -0.7 -4.9 quinolinate synthase A compare
PS417_01095 -0.7 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_03310 -0.7 -2.2 carbonate dehydratase compare
PS417_11930 -0.7 -4.7 hypothetical protein compare
PS417_25790 -0.7 -3.1 aminoglycoside phosphotransferase compare
PS417_04180 -0.7 -2.0 GntR family transcriptional regulator compare
PS417_02895 -0.7 -2.2 precorrin-6Y C5,15-methyltransferase compare
PS417_24935 -0.7 -0.6 hypothetical protein compare
PS417_01210 -0.7 -5.1 hypothetical protein compare
PS417_18590 -0.7 -1.6 SAM-dependent methyltransferase compare
PS417_08155 -0.7 -2.1 integration host factor subunit beta compare
PS417_16520 -0.7 -1.7 cold-shock protein compare
PS417_26815 -0.7 -1.9 peptidase M16 compare
PS417_22990 -0.7 -1.0 iron dicitrate transport regulator FecR compare
PS417_10040 -0.6 -0.9 MFS transporter compare
PS417_10135 -0.6 -1.6 phage tail protein compare
PS417_17980 -0.6 -1.9 ABC transporter permease compare
PS417_22565 -0.6 -1.1 formyltetrahydrofolate deformylase compare
PS417_21360 -0.6 -1.1 termination factor Rho compare
PS417_21220 -0.6 -1.7 acetyl-CoA acetyltransferase compare
PS417_18425 -0.6 -1.2 sporulation protein compare
PS417_02370 -0.6 -1.4 ADP-ribose pyrophosphatase compare
PS417_19065 -0.6 -1.1 monooxygenase compare
PS417_21725 -0.6 -2.9 amino acid transporter compare
PS417_28080 -0.6 -5.2 phosphate ABC transporter permease compare
PS417_07845 -0.6 -1.8 transcriptional regulator compare
PS417_17240 -0.6 -1.8 trigger factor compare
PS417_26805 -0.6 -0.8 cell division protein FtsE compare
PS417_17500 -0.6 -3.1 sulfurtransferase compare
PS417_18765 -0.6 -2.2 hypothetical protein compare
PS417_05540 -0.6 -2.7 histidine kinase compare
PS417_06075 -0.6 -1.5 hypothetical protein compare
PS417_17160 -0.6 -1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_15710 -0.6 -1.4 nitrate reductase compare
PS417_14710 -0.6 -1.2 isochorismatase compare
PS417_27800 -0.6 -3.0 exodeoxyribonuclease III compare
PS417_08945 -0.6 -4.3 heat shock protein 90 compare
PS417_24115 -0.6 -1.8 hypothetical protein compare
PS417_14920 -0.6 -3.1 CoA-transferase compare
PS417_17420 -0.6 -3.3 ethanol oxidation regulatory protein ercA (from data) compare
PS417_10220 -0.6 -2.6 hypothetical protein compare
PS417_02555 -0.6 -5.0 exoribonuclease R compare
PS417_08170 -0.6 -3.8 capsular biosynthesis protein compare
PS417_19965 -0.6 -4.2 histidine kinase compare
PS417_18420 -0.6 -1.6 deoxyribonuclease compare
PS417_26645 -0.6 -2.2 chemotaxis protein compare
PS417_26605 -0.6 -1.1 malonate decarboxylase subunit beta compare
PS417_01995 -0.6 -1.1 hypothetical protein compare
PS417_17610 -0.6 -1.2 AsnC family transcriptional regulator compare
PS417_23360 -0.6 -0.9 hypothetical protein compare
PS417_23390 -0.6 -3.7 ubiquinol oxidase subunit II compare
PS417_05120 -0.6 -1.9 RNA polymerase subunit sigma-24 compare
PS417_00380 -0.5 -0.9 zinc ABC transporter ATP-binding protein compare
PS417_08160 -0.5 -2.6 hypothetical protein compare
PS417_21750 -0.5 -4.8 acetyl-CoA synthetase compare
PS417_19075 -0.5 -3.2 ABC transporter ATP-binding protein compare
PS417_00065 -0.5 -0.9 3-methyladenine DNA glycosylase compare
PS417_10870 -0.5 -2.2 GABA permease compare
PS417_28170 -0.5 -2.0 transcriptional regulator compare
PS417_12840 -0.5 -1.8 TetR family transcriptional regulator compare
PS417_12505 -0.5 -2.7 peptidase compare
PS417_21000 -0.5 -1.2 CrfX protein compare
PS417_20635 -0.5 -0.7 ABC transporter ATP-binding protein compare
PS417_03815 -0.5 -2.1 DNA transporter compare
PS417_01280 -0.5 -1.4 peptidoglycan-binding protein LysM compare
PS417_25270 -0.5 -2.3 NrdR family transcriptional regulator compare
PS417_21780 -0.5 -1.7 argininosuccinate lyase compare
PS417_17425 -0.5 -2.2 hypothetical protein compare
PS417_13165 -0.5 -1.4 peroxidase compare
PS417_01620 -0.5 -1.4 preprotein translocase subunit SecB compare
PS417_03465 -0.5 -1.1 type III secretion protein compare
PS417_28510 -0.5 -3.6 chromosome partitioning protein compare
PS417_07190 -0.5 -2.6 MFS transporter compare
PS417_00225 -0.5 -3.1 hypothetical protein compare
PS417_13790 -0.5 -2.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas simiae WCS417

For carbon source Sodium pyruvate across organisms