Experiment set1IT038 for Variovorax sp. OAS795

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS22385 -5.7 -4.0 D-amino acid dehydrogenase compare
ABID97_RS22380 -5.2 -3.5 winged helix-turn-helix transcriptional regulator compare
ABID97_RS07405 -5.0 -9.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS06575 -4.9 -3.4 trehalose-phosphatase compare
ABID97_RS10815 -4.7 -11.0 phosphoenolpyruvate synthase compare
ABID97_RS02455 -4.6 -3.2 nucleotidyltransferase family protein compare
ABID97_RS16595 -4.6 -4.1 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS16565 -4.5 -6.9 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS23225 -4.4 -7.4 glutamate synthase-related protein compare
ABID97_RS07840 -4.4 -6.8 branched-chain amino acid ABC transporter permease compare
ABID97_RS01565 -4.1 -6.9 DNA starvation/stationary phase protection protein compare
ABID97_RS07855 -4.1 -2.8 ABC transporter ATP-binding protein compare
ABID97_RS23940 -3.9 -5.3 cytochrome c oxidase subunit 3 compare
ABID97_RS07850 -3.8 -5.9 ABC transporter ATP-binding protein compare
ABID97_RS08220 -3.8 -6.3 phosphoenolpyruvate carboxylase compare
ABID97_RS20615 -3.8 -4.2 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS15130 -3.7 -1.7 contractile injection system protein, VgrG/Pvc8 family compare
ABID97_RS05260 -3.6 -1.6 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS07435 -3.4 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS26160 -3.4 -1.5 nuclear transport factor 2 family protein compare
ABID97_RS12140 -3.4 -8.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS14625 -3.3 -4.9 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS07845 -3.3 -7.9 ABC transporter ATP-binding protein compare
ABID97_RS22860 -3.3 -2.2 MurR/RpiR family transcriptional regulator compare
ABID97_RS21100 -3.1 -1.4 GntR family transcriptional regulator compare
ABID97_RS02420 -3.0 -5.8 protealysin inhibitor emfourin compare
ABID97_RS23360 -3.0 -1.4 hypothetical protein compare
ABID97_RS23950 -2.9 -9.9 cytochrome c oxidase assembly protein compare
ABID97_RS07000 -2.9 -5.2 threonine ammonia-lyase, biosynthetic compare
ABID97_RS02145 -2.9 -7.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS16600 -2.9 -5.8 CysB family HTH-type transcriptional regulator compare
ABID97_RS25525 -2.8 -2.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS03125 -2.8 -6.7 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS07430 -2.8 -7.1 pantoate--beta-alanine ligase compare
ABID97_RS23965 -2.8 -9.9 cytochrome c oxidase subunit II compare
ABID97_RS28000 -2.8 -1.3 NADPH-dependent FMN reductase compare
ABID97_RS05250 -2.7 -2.7 anthranilate synthase component I compare
ABID97_RS01855 -2.7 -1.2 preprotein translocase subunit YajC compare
ABID97_RS20425 -2.7 -2.5 DUF2818 family protein compare
ABID97_RS16910 -2.7 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS16535 -2.6 -4.7 arginine/lysine/ornithine decarboxylase compare
ABID97_RS25845 -2.6 -1.7 sugar ABC transporter permease compare
ABID97_RS22620 -2.6 -6.8 response regulator transcription factor compare
ABID97_RS09180 -2.6 -1.8 DNA polymerase I compare
ABID97_RS21150 -2.5 -6.7 FAD-dependent oxidoreductase compare
ABID97_RS13860 -2.5 -5.0 hypothetical protein compare
ABID97_RS00585 -2.5 -8.5 TlpA disulfide reductase family protein compare
ABID97_RS02215 -2.5 -12.3 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS23960 -2.5 -11.0 cytochrome c oxidase subunit I compare
ABID97_RS23930 -2.4 -9.0 SURF1 family protein compare
ABID97_RS11290 -2.4 -1.1 DNA repair protein RadC compare
ABID97_RS15665 -2.4 -7.0 [protein-PII] uridylyltransferase compare
ABID97_RS02460 -2.4 -9.8 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS10295 -2.4 -1.5 winged helix-turn-helix transcriptional regulator compare
ABID97_RS00255 -2.4 -10.0 type IV pilus twitching motility protein PilT compare
ABID97_RS23920 -2.4 -5.8 COX15/CtaA family protein compare
ABID97_RS27720 -2.4 -1.6 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS03110 -2.4 -5.3 helix-turn-helix transcriptional regulator compare
ABID97_RS15375 -2.3 -3.5 DUF934 domain-containing protein compare
ABID97_RS03680 -2.3 -5.1 lysophospholipid transporter LplT compare
ABID97_RS23220 -2.3 -1.3 glutamate synthase subunit beta compare
ABID97_RS15380 -2.3 -8.5 nitrite/sulfite reductase compare
ABID97_RS14260 -2.2 -4.7 FtsH protease activity modulator HflK compare
ABID97_RS17590 -2.2 -8.3 endopeptidase La compare
ABID97_RS27235 -2.2 -1.4 hypothetical protein compare
ABID97_RS23330 -2.2 -5.1 c-type cytochrome compare
ABID97_RS02120 -2.2 -8.5 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS22625 -2.2 -7.6 HAMP domain-containing sensor histidine kinase compare
ABID97_RS12345 -2.2 -7.0 alpha/beta fold hydrolase compare
ABID97_RS01200 -2.1 -1.2 L-idonate 5-dehydrogenase compare
ABID97_RS25015 -2.1 -1.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS20020 -2.1 -2.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS08425 -2.1 -2.8 tryptophan synthase subunit alpha compare
ABID97_RS19695 -2.1 -1.3 alpha/beta fold hydrolase compare
ABID97_RS09315 -2.1 -1.3 substrate-binding domain-containing protein compare
ABID97_RS14095 -2.0 -6.3 PAS domain S-box protein compare
ABID97_RS14100 -2.0 -4.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02110 -2.0 -11.4 type IV pilus modification protein PilV compare
ABID97_RS23320 -2.0 -3.3 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS28635 -2.0 -3.9 IclR family transcriptional regulator compare
ABID97_RS13450 -2.0 -2.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS02115 -2.0 -7.6 PilW family protein compare
ABID97_RS25080 -2.0 -8.0 MFS transporter compare
ABID97_RS03915 -2.0 -5.6 DUF4124 domain-containing protein compare
ABID97_RS01105 -1.9 -1.7 AMP-binding protein compare
ABID97_RS13325 -1.9 -1.2 antibiotic biosynthesis monooxygenase compare
ABID97_RS19550 -1.9 -1.2 phosphatase PAP2 family protein compare
ABID97_RS02285 -1.9 -11.1 response regulator transcription factor compare
ABID97_RS28810 -1.9 -1.6 LysR substrate-binding domain-containing protein compare
ABID97_RS17670 -1.9 -4.4 alpha/beta hydrolase compare
ABID97_RS02130 -1.9 -8.3 type IV pilin protein compare
ABID97_RS13990 -1.9 -1.3 amino acid aminotransferase compare
ABID97_RS07775 -1.9 -3.3 phosphoribosylglycinamide formyltransferase compare
ABID97_RS03495 -1.8 -7.8 TetR family transcriptional regulator compare
ABID97_RS18205 -1.8 -4.2 XRE family transcriptional regulator compare
ABID97_RS11040 -1.8 -1.2 6,7-dimethyl-8-ribityllumazine synthase compare
ABID97_RS25085 -1.8 -1.8 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS14985 -1.8 -1.1 hypothetical protein compare
ABID97_RS02600 -1.8 -1.2 homoserine O-acetyltransferase compare
ABID97_RS11640 -1.8 -5.7 TetR family transcriptional regulator compare
ABID97_RS24770 -1.8 -6.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS23430 -1.8 -8.6 type IV-A pilus assembly ATPase PilB compare
ABID97_RS12110 -1.8 -1.1 phosphoribosyltransferase family protein compare
ABID97_RS22975 -1.8 -3.7 cytochrome c1 compare
ABID97_RS02140 -1.8 -4.2 sugar transferase compare
ABID97_RS02125 -1.7 -13.0 PilC/PilY family type IV pilus protein compare
ABID97_RS23435 -1.7 -8.4 type II secretion system F family protein compare
ABID97_RS27290 -1.7 -1.1 methyltransferase domain-containing protein compare
ABID97_RS15995 -1.7 -4.1 PilZ domain-containing protein compare
ABID97_RS19555 -1.7 -1.3 response regulator transcription factor compare
ABID97_RS14975 -1.7 -2.7 hypothetical protein compare
ABID97_RS08775 -1.7 -1.1 ribosome small subunit-dependent GTPase A compare
ABID97_RS14115 -1.7 -3.0 dihydrolipoyl dehydrogenase compare
ABID97_RS12660 -1.7 -1.3 formylmethanofuran--tetrahydromethanopterin N-formyltransferase compare
ABID97_RS10355 -1.7 -3.2 FadR/GntR family transcriptional regulator compare
ABID97_RS28945 -1.7 -1.1 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS10250 -1.6 -2.0 Rieske 2Fe-2S domain-containing protein compare
ABID97_RS22910 -1.6 -1.7 hypothetical protein compare
ABID97_RS06600 -1.6 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS19465 -1.6 -1.6 CoA transferase compare
ABID97_RS17655 -1.6 -1.5 HAD-IA family hydrolase compare
ABID97_RS27900 -1.6 -1.5 DUF4242 domain-containing protein compare
ABID97_RS14160 -1.6 -3.8 cell division protein ZapE compare
ABID97_RS01825 -1.6 -8.2 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS23440 -1.6 -7.2 A24 family peptidase compare
ABID97_RS16315 -1.6 -3.4 hypothetical protein compare
ABID97_RS15370 -1.5 -5.6 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS14920 -1.5 -6.7 IclR family transcriptional regulator compare
ABID97_RS01380 -1.5 -2.3 LysR substrate-binding domain-containing protein compare
ABID97_RS05170 -1.5 -1.5 type VI secretion system tube protein Hcp compare
ABID97_RS25905 -1.5 -1.8 ABC transporter substrate-binding protein compare
ABID97_RS06345 -1.5 -1.8 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23970 -1.5 -8.9 DUF2244 domain-containing protein compare
ABID97_RS15150 -1.5 -1.0 phage tail assembly protein compare
ABID97_RS01840 -1.5 -7.1 DUF1631 family protein compare
ABID97_RS15095 -1.5 -1.2 hypothetical protein compare
ABID97_RS08445 -1.5 -6.0 FimV/HubP family polar landmark protein compare
ABID97_RS07500 -1.5 -1.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS22285 -1.5 -2.1 GntR family transcriptional regulator compare
ABID97_RS24705 -1.4 -3.9 response regulator compare
ABID97_RS22980 -1.4 -6.4 cytochrome bc complex cytochrome b subunit compare
ABID97_RS23710 -1.4 -6.4 RNase adapter RapZ compare
ABID97_RS13570 -1.4 -3.1 IclR family transcriptional regulator compare
ABID97_RS12180 -1.4 -1.0 hypothetical protein compare
ABID97_RS23650 -1.4 -9.4 serine/threonine-protein kinase compare
ABID97_RS22985 -1.4 -1.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABID97_RS05275 -1.4 -1.0 anthranilate phosphoribosyltransferase compare
ABID97_RS28760 -1.4 -1.9 aldehyde dehydrogenase family protein compare
ABID97_RS19030 -1.4 -1.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS06175 -1.4 -8.2 STAS domain-containing protein compare
ABID97_RS17600 -1.4 -0.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS06315 -1.4 -7.4 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS23380 -1.4 -7.3 lytic transglycosylase domain-containing protein compare
ABID97_RS19065 -1.4 -3.3 GntR family transcriptional regulator compare
ABID97_RS12440 -1.3 -5.3 CaiB/BaiF CoA-transferase family protein compare
ABID97_RS05365 -1.3 -1.6 DUF4390 domain-containing protein compare
ABID97_RS02135 -1.3 -4.0 GspH/FimT family pseudopilin compare
ABID97_RS14675 -1.3 -1.2 winged helix-turn-helix transcriptional regulator compare
ABID97_RS27215 -1.3 -0.9 NAD(+)--rifampin ADP-ribosyltransferase compare
ABID97_RS10430 -1.3 -3.2 CerR family C-terminal domain-containing protein compare
ABID97_RS10210 -1.3 -0.8 TfoX/Sxy family protein compare
ABID97_RS16985 -1.3 -2.0 transcriptional repressor LexA compare
ABID97_RS26840 -1.3 -1.3 hypothetical protein compare
ABID97_RS16690 -1.3 -3.4 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS06190 -1.3 -3.6 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS27605 -1.3 -1.4 amidohydrolase family protein compare
ABID97_RS21770 -1.3 -6.0 aminopeptidase N compare
ABID97_RS23325 -1.3 -3.2 cytochrome c biogenesis protein ResB compare
ABID97_RS03140 -1.3 -1.0 tRNA-Gly compare
ABID97_RS23270 -1.3 -6.0 pilus assembly protein PilP compare
ABID97_RS29115 -1.3 -2.5 (2Fe-2S)-binding protein compare
ABID97_RS13865 -1.3 -3.3 hypothetical protein compare
ABID97_RS27665 -1.3 -0.8 LysR family transcriptional regulator compare
ABID97_RS04150 -1.3 -3.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS18585 -1.3 -1.0 acyl-CoA dehydrogenase family protein compare
ABID97_RS19375 -1.2 -2.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS23230 -1.2 -6.3 transposase compare
ABID97_RS26085 -1.2 -2.5 histidine kinase compare
ABID97_RS08200 -1.2 -5.7 LytTR family DNA-binding domain-containing protein compare
ABID97_RS07395 -1.2 -1.4 glutaredoxin 3 compare
ABID97_RS24920 -1.2 -1.1 Holliday junction branch migration protein RuvA compare
ABID97_RS11985 -1.2 -1.3 hypothetical protein compare
ABID97_RS23185 -1.2 -1.6 ABC transporter ATP-binding protein compare
ABID97_RS23455 -1.2 -1.2 hypothetical protein compare
ABID97_RS04520 -1.2 -2.2 MotA/TolQ/ExbB proton channel family protein compare
ABID97_RS17895 -1.2 -3.4 transcriptional regulator NrdR compare
ABID97_RS24390 -1.2 -4.4 c-type cytochrome compare
ABID97_RS23915 -1.2 -1.6 heme o synthase compare
ABID97_RS25130 -1.2 -4.3 carboxyl transferase domain-containing protein compare
ABID97_RS03115 -1.2 -2.8 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS09800 -1.2 -0.7 hypothetical protein compare
ABID97_RS01070 -1.2 -1.5 Crp/Fnr family transcriptional regulator compare
ABID97_RS07260 -1.2 -3.5 TIM44-like domain-containing protein compare
ABID97_RS23285 -1.2 -6.5 pilus assembly protein PilM compare
ABID97_RS22705 -1.2 -6.4 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS14425 -1.2 -2.0 SDR family oxidoreductase compare
ABID97_RS22060 -1.2 -0.7 MFS transporter compare
ABID97_RS08845 -1.2 -2.5 aromatic-ring-hydroxylating dioxygenase subunit beta compare
ABID97_RS14930 -1.1 -3.9 leucyl/phenylalanyl-tRNA--protein transferase compare
ABID97_RS04305 -1.1 -1.4 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Alanine in Variovorax sp. OAS795

For carbon source L-Alanine across organisms