Experiment set1IT038 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2118 -6.0 -1.7 arsenate reductase (glutaredoxin) compare
EX28DRAFT_2851 -5.4 -2.5 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2531 -4.6 -5.2 endopeptidase La compare
EX28DRAFT_4386 -4.4 -3.0 Signal transduction histidine kinase compare
EX28DRAFT_2027 -4.3 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3614 -4.3 -8.2 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4123 -4.3 -3.9 transcriptional regulator, DeoR family compare
EX28DRAFT_2985 -4.2 -11.2 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_4418 -3.9 -7.6 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2916 -3.9 -7.4 diaminopimelate decarboxylase compare
EX28DRAFT_4061 -3.8 -7.3 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_3401 -3.8 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2548 -3.6 -4.0 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0167 -3.5 -1.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_2701 -3.4 -6.4 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2774 -3.3 -7.5 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2117 -3.3 -13.5 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_4422 -3.3 -5.5 argininosuccinate lyase compare
EX28DRAFT_0286 -3.3 -1.8 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_4271 -3.3 -0.9 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_1123 -3.3 -6.3 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_1122 -3.2 -8.2 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_3224 -3.2 -3.8 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_4158 -3.2 -4.6 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_4015 -3.2 -2.6 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_1986 -3.1 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2585 -3.1 -1.5 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4421 -3.1 -0.6 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_1124 -3.1 -10.9 sucrose-6-phosphate hydrolase compare
EX28DRAFT_4156 -3.1 -2.2 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4155 -3.1 -4.5 DNA adenine methylase (dam) compare
EX28DRAFT_2635 -3.0 -8.5 Fructose-2,6-bisphosphatase compare
EX28DRAFT_3898 -3.0 -1.9 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_0125 -3.0 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4120 -3.0 -5.0 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_3645 -2.9 -4.8 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0111 -2.8 -1.8 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4153 -2.7 -1.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0331 -2.7 -1.8 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2650 -2.7 -4.6 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4383 -2.7 -12.8 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_4341 -2.7 -3.2 Protein-disulfide isomerase compare
EX28DRAFT_2893 -2.7 -4.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0693 -2.6 -1.3 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_2958 -2.6 -1.7 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_4419 -2.6 -1.5 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_3675 -2.6 -7.2 transcriptional regulator, LacI family compare
EX28DRAFT_4405 -2.5 -0.9 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_2846 -2.5 -4.4 adenylyl-sulfate kinase compare
EX28DRAFT_3087 -2.5 -11.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
EX28DRAFT_2043 -2.4 -6.0 transcriptional regulator, AsnC family compare
EX28DRAFT_2945 -2.4 -2.0 tyrosine recombinase XerD compare
EX28DRAFT_3297 -2.3 -6.5 ribonuclease, Rne/Rng family compare
EX28DRAFT_2252 -2.3 -1.7 TolA protein compare
EX28DRAFT_2265 -2.2 -0.6 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2852 -2.2 -7.4 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0533 -2.2 -4.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0593 -2.2 -9.0 DNA-methyltransferase (dcm) compare
EX28DRAFT_4184 -2.1 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4452 -2.1 -2.3 thioredoxin compare
EX28DRAFT_4437 -2.1 -3.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4170 -2.1 -6.3 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0534 -2.1 -3.2 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_3376 -2.0 -8.2 ribonuclease R compare
EX28DRAFT_0228 -2.0 -1.3 tRNA compare
EX28DRAFT_0322 -1.9 -6.5 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0334 -1.9 -1.8 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0536 -1.9 -1.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_4507 -1.9 -5.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_4297 -1.9 -1.6 cell division ATP-binding protein FtsE compare
EX28DRAFT_2917 -1.8 -2.7 Transcriptional regulator compare
EX28DRAFT_3070 -1.8 -1.8 Predicted phosphohydrolases compare
EX28DRAFT_0327 -1.8 -5.9 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0934 -1.8 -7.7 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3883 -1.8 -4.0 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0323 -1.8 -2.5 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0725 -1.8 -2.1 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_2702 -1.8 -4.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0932 -1.8 -2.3 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0970 -1.7 -4.2 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_4436 -1.7 -2.9 Transcriptional regulator compare
EX28DRAFT_2169 -1.7 -5.0 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2651 -1.7 -3.8 glutamate 5-kinase compare
EX28DRAFT_0166 -1.7 -5.5 polyphosphate kinase 1 compare
EX28DRAFT_4296 -1.7 -3.9 putative protein insertion permease FtsX compare
EX28DRAFT_0333 -1.7 -6.0 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_3613 -1.7 -3.6 RNA compare
EX28DRAFT_3081 -1.7 -10.2 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_3461 -1.7 -2.2 ornithine carbamoyltransferase compare
EX28DRAFT_1684 -1.7 -5.6 FeS assembly protein SufD compare
EX28DRAFT_3089 -1.6 -1.0 Transcriptional regulators compare
EX28DRAFT_2853 -1.6 -4.4 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0332 -1.6 -6.5 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2904 -1.6 -10.5 phosphoenolpyruvate-protein phosphotransferase compare
EX28DRAFT_2682 -1.6 -8.0 hydroxyacylglutathione hydrolase compare
EX28DRAFT_2050 -1.6 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_4459 -1.6 -5.1 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0321 -1.6 -0.8 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_1692 -1.5 -1.1 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0074 -1.5 -6.7 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_0494 -1.5 -2.1 Protein-tyrosine-phosphatase compare
EX28DRAFT_0330 -1.5 -1.7 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2654 -1.5 -7.5 Alpha/beta hydrolase of unknown function (DUF1100) compare
EX28DRAFT_0538 -1.5 -4.4 histidinol-phosphate aminotransferase compare
EX28DRAFT_0779 -1.5 -3.2 hypothetical protein compare
EX28DRAFT_0972 -1.5 -1.6 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3507 -1.5 -1.2 Response regulator compare
EX28DRAFT_0325 -1.5 -2.4 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0329 -1.4 -4.3 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_2272 -1.4 -5.0 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_4493 -1.4 -3.5 Transcriptional regulator compare
EX28DRAFT_4121 -1.4 -1.5 Rhodanese-related sulfurtransferase compare
EX28DRAFT_3369 -1.4 -1.1 RNA chaperone Hfq compare
EX28DRAFT_3368 -1.4 -0.9 tRNA dimethylallyltransferase compare
EX28DRAFT_0328 -1.4 -1.3 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0170 -1.4 -5.8 uracil phosphoribosyltransferase (EC 2.4.2.9) compare
EX28DRAFT_4397 -1.4 -6.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_2864 -1.4 -5.6 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_4138 -1.4 -2.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_1342 -1.3 -1.1 hypothetical protein compare
EX28DRAFT_3449 -1.3 -1.6 Predicted membrane protein compare
EX28DRAFT_2721 -1.3 -2.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2250 -1.3 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_1650 -1.3 -1.5 ribonuclease T compare
EX28DRAFT_0539 -1.3 -4.0 histidinol dehydrogenase compare
EX28DRAFT_1542 -1.3 -5.2 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_1685 -1.3 -5.7 FeS assembly ATPase SufC compare
EX28DRAFT_2313 -1.3 -3.6 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_1682 -1.3 -6.2 SufE protein probably involved in Fe-S center assembly compare
EX28DRAFT_2999 -1.3 -2.6 Fe-S cluster protector protein compare
EX28DRAFT_1039 -1.3 -1.5 Sortase and related acyltransferases compare
EX28DRAFT_2847 -1.3 -7.8 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_3410 -1.3 -2.5 hypothetical protein compare
EX28DRAFT_0540 -1.3 -4.1 ATP phosphoribosyltransferase compare
EX28DRAFT_4420 -1.2 -0.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0529 -1.2 -2.1 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0076 -1.2 -2.1 elongation factor 4 compare
EX28DRAFT_3879 -1.2 -2.4 Glycosyltransferase compare
EX28DRAFT_0935 -1.2 -4.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0876 -1.2 -0.7 hypothetical protein compare
EX28DRAFT_4065 -1.2 -4.1 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_1834 -1.2 -4.8 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_0108 -1.2 -0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_1493 -1.1 -3.5 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2492 -1.1 -2.4 Protein of unknown function (DUF2496) compare
EX28DRAFT_1686 -1.1 -5.4 FeS assembly protein SufB compare
EX28DRAFT_2045 -1.1 -0.7 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0324 -1.1 -2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0918 -1.1 -1.0 Ogr/Delta-like zinc finger compare
EX28DRAFT_3899 -1.1 -4.2 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_4446 -1.1 -3.9 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_3259 -1.1 -4.1 Predicted P-loop-containing kinase compare
EX28DRAFT_0068 -1.1 -1.0 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_0535 -1.1 -2.0 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_3248 -1.1 -3.9 ABC transport permease subunit compare
EX28DRAFT_0180 -1.1 -2.8 Peroxiredoxin compare
EX28DRAFT_1596 -1.1 -0.6 Protein of unknown function (DUF1019) compare
EX28DRAFT_0697 -1.1 -1.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_1683 -1.1 -5.4 cysteine desulfurases, SufSfamily compare
EX28DRAFT_0219 -1.0 -3.8 Predicted Na+-dependent transporter compare
EX28DRAFT_1623 -1.0 -2.8 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_4246 -1.0 -7.3 excinuclease ABC, A subunit compare
EX28DRAFT_2837 -1.0 -3.5 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_0360 -1.0 -1.7 RNA compare
EX28DRAFT_0833 -1.0 -2.5 Uncharacterized conserved protein compare
EX28DRAFT_4266 -1.0 -1.7 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_1636 -1.0 -3.3 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
EX28DRAFT_2532 -1.0 -1.7 RNA compare
EX28DRAFT_0857 -1.0 -0.8 tRNA compare
EX28DRAFT_4300 -1.0 -1.1 Predicted membrane protein compare
EX28DRAFT_1649 -1.0 -3.4 lactoylglutathione lyase compare
EX28DRAFT_1988 -1.0 -4.3 Predicted ATP-dependent protease compare
EX28DRAFT_4542 -1.0 -2.1 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_1624 -0.9 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_2213 -0.9 -1.5 dethiobiotin synthase compare
EX28DRAFT_0519 -0.9 -6.2 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_1418 -0.9 -2.1 phenylacetate-CoA oxygenase, PaaI subunit compare
EX28DRAFT_2424 -0.9 -1.9 transcriptional regulator, TetR family compare
EX28DRAFT_3901 -0.9 -4.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_2216 -0.9 -2.9 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_2720 -0.9 -3.8 Small protein A (tmRNA-binding) compare
EX28DRAFT_3616 -0.9 -1.4 threonine synthase compare
EX28DRAFT_2126 -0.9 -2.2 transcriptional regulator, DeoR family compare
EX28DRAFT_0976 -0.9 -1.5 phage shock protein A (PspA) family protein compare
EX28DRAFT_2997 -0.9 -4.3 tRNA (guanine-N(7)-)-methyltransferase compare
EX28DRAFT_4063 -0.9 -4.4 Zn-dependent oligopeptidases compare
EX28DRAFT_3199 -0.9 -1.2 Predicted periplasmic or secreted lipoprotein compare
EX28DRAFT_0242 -0.9 -1.2 type VI secretion protein, VC_A0107 family compare
EX28DRAFT_1839 -0.9 -3.0 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_1584 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_4461 -0.9 -2.2 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_3278 -0.9 -1.7 Glutathione S-transferase compare
EX28DRAFT_2946 -0.9 -3.0 flavodoxin, long chain compare
EX28DRAFT_1956 -0.9 -0.6 hypothetical protein compare
EX28DRAFT_4191 -0.8 -2.0 small GTP-binding protein domain compare
EX28DRAFT_2848 -0.8 -4.6 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2974 -0.8 -2.7 transketolase, bacterial and yeast compare
EX28DRAFT_2775 -0.8 -3.2 Predicted membrane protein compare
EX28DRAFT_0092 -0.8 -0.3 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0364 -0.8 -1.2 Alkylated DNA repair protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms