Experiment set1IT038 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Sodium nitrite 30 mM

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3774 +6.3 15.7 nitrite transporter, HPP family (from data) conserved
Echvi_2954 +4.7 29.9 Nucleoside permease compare
Echvi_1204 +4.4 33.6 Transcriptional regulator conserved
Echvi_0561 +4.0 20.2 Sugar kinases, ribokinase family compare
Echvi_3292 +3.8 2.2 hypothetical protein compare
Echvi_0785 +3.6 29.4 Fatty acid desaturase. compare
Echvi_1510 +3.5 10.7 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
Echvi_2359 +3.1 13.6 hypothetical protein compare
Echvi_1256 +3.1 23.8 Predicted transcriptional regulators compare
Echvi_1898 +2.9 8.9 Signal transduction histidine kinase compare
Echvi_1743 +2.9 13.6 alpha-L-glutamate ligases, RimK family compare
Echvi_1205 +2.9 9.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Echvi_1181 +2.8 20.3 Uridine kinase compare
Echvi_0744 +2.7 18.0 glycine dehydrogenase (decarboxylating) compare
Echvi_4036 +2.4 18.9 Glucose-6-phosphate isomerase compare
Echvi_1519 +2.3 15.8 Na+/H+-dicarboxylate symporters compare
Echvi_0717 +2.3 6.5 DnaK suppressor protein compare
Echvi_4631 +2.3 13.2 (p)ppGpp synthetase, RelA/SpoT family compare
Echvi_1180 +2.2 12.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Echvi_2325 +2.2 18.3 6-phosphofructokinase compare
Echvi_1334 +2.1 14.1 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Echvi_4069 +2.1 8.8 Enoyl-CoA hydratase/carnithine racemase compare
Echvi_3440 +2.1 8.0 bacillithiol biosynthesis deacetylase BshB1 compare
Echvi_3313 +2.0 5.7 hypothetical protein compare
Echvi_0128 +1.9 4.7 hypothetical protein compare
Echvi_1596 +1.9 11.9 Acyl dehydratase compare
Echvi_1200 +1.9 8.4 Predicted membrane protein compare
Echvi_2560 +1.8 10.9 PAS domain S-box compare
Echvi_2252 +1.8 9.1 Mg-chelatase subunit ChlD compare
Echvi_4081 +1.6 2.2 Malic enzyme compare
Echvi_0206 +1.6 12.1 Transcriptional regulators of sugar metabolism compare
Echvi_3703 +1.6 8.6 hypothetical protein compare
Echvi_2254 +1.6 8.4 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Echvi_0373 +1.6 10.5 acyl-CoA thioester hydrolase, YbgC/YbaW family conserved
Echvi_0626 +1.6 9.9 hypothetical protein compare
Echvi_2253 +1.5 9.5 hypothetical protein compare
Echvi_3291 +1.5 4.7 Predicted membrane protein compare
Echvi_1850 +1.5 11.6 Bacterial SH3 domain. compare
Echvi_3704 +1.5 8.3 hypothetical protein compare
Echvi_1020 +1.5 2.7 hypothetical protein compare
Echvi_1745 +1.5 5.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Echvi_1517 +1.5 9.6 hypothetical protein compare
Echvi_3702 +1.5 7.5 von Willebrand factor type A domain. compare
Echvi_1593 +1.5 6.6 Superoxide dismutase compare
Echvi_3046 +1.5 7.8 hypothetical protein compare
Echvi_2637 +1.4 12.6 Predicted esterase of the alpha-beta hydrolase superfamily compare
Echvi_3717 +1.4 11.6 Outer membrane protein/protective antigen OMA87 compare
Echvi_3722 +1.4 6.3 Acyl-CoA hydrolase compare
Echvi_4342 +1.4 12.6 transporter, SSS family compare
Echvi_3914 +1.4 11.7 Transcriptional regulators compare
Echvi_3045 +1.4 8.3 hypothetical protein compare
Echvi_4397 +1.4 10.3 Nucleoside-diphosphate-sugar epimerases compare
Echvi_3290 +1.4 10.4 Fatty-acid desaturase compare
Echvi_0589 +1.3 6.0 hypothetical protein compare
Echvi_1533 +1.3 4.4 hypothetical protein compare
Echvi_3362 +1.3 9.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Echvi_2084 +1.3 11.5 Uncharacterized protein conserved in bacteria compare
Echvi_1175 +1.3 10.6 Chloride channel protein EriC compare
Echvi_0842 +1.3 9.8 Membrane proteins related to metalloendopeptidases compare
Echvi_0646 +1.3 5.1 Cyanate permease compare
Echvi_2500 +1.2 5.6 fructose-6-phosphate aldolase, TalC/MipB family compare
Echvi_0828 +1.2 4.7 ribosomal subunit interface protein compare
Echvi_4396 +1.2 7.4 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Echvi_1827 +1.2 8.3 aspartate kinase compare
Echvi_2380 +1.2 5.8 6-phosphofructokinase compare
Echvi_1557 +1.2 6.6 MoxR-like ATPases compare
Echvi_1638 +1.2 2.5 hypothetical protein compare
Echvi_3044 +1.2 7.4 hypothetical protein compare
Echvi_2823 +1.2 7.4 Predicted Zn-dependent peptidases compare
Echvi_2246 +1.1 2.3 hypothetical protein compare
Echvi_3016 +1.1 9.2 K+ transport systems, NAD-binding component compare
Echvi_1732 +1.1 1.8 hypothetical protein compare
Echvi_3017 +1.1 8.4 Trk-type K+ transport systems, membrane components compare
Echvi_1208 +1.1 4.3 Protein of unknown function (DUF1469). compare
Echvi_2996 +1.1 4.9 polyphosphate kinase 1 compare
Echvi_1450 +1.1 8.2 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases compare
Echvi_1255 +1.1 2.3 Fatty acid hydroxylase superfamily. compare
Echvi_0161 +1.1 3.5 Exopolyphosphatase compare
Echvi_1538 +1.1 8.1 hypothetical protein compare
Echvi_4094 +1.1 2.7 hypothetical protein compare
Echvi_1831 +1.1 3.0 Fe2+/Zn2+ uptake regulation proteins compare
Echvi_4392 +1.1 9.6 Glycosyltransferases involved in cell wall biogenesis compare
Echvi_1752 +1.1 4.1 hypothetical protein compare
Echvi_0168 +1.0 3.3 Uncharacterized homolog of PSP1 compare
Echvi_1798 +1.0 6.4 Uridine phosphorylase compare
Echvi_1332 +1.0 2.9 single-stranded-DNA-specific exonuclease RecJ compare
Echvi_2778 +1.0 4.9 hypothetical protein compare
Echvi_1227 +1.0 1.9 hypothetical protein compare
Echvi_2567 +1.0 6.0 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Echvi_4553 +1.0 1.7 hypothetical protein compare
Echvi_3859 +1.0 6.7 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_3777 +1.0 5.7 Beta-xylosidase compare
Echvi_0129 +1.0 4.7 hypothetical protein compare
Echvi_1507 +1.0 7.2 Predicted Zn-dependent peptidases compare
Echvi_3575 +1.0 5.2 ribulose-phosphate 3-epimerase compare
Echvi_1211 +1.0 7.2 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Echvi_3778 +1.0 6.0 Arylsulfatase A and related enzymes compare
Echvi_1832 +1.0 4.2 Peroxiredoxin compare
Echvi_3472 +1.0 5.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_4391 +1.0 8.6 Nucleoside-diphosphate-sugar epimerases compare
Echvi_1895 +0.9 4.1 Molybdopterin converting factor, large subunit compare
Echvi_3073 +0.9 5.7 Transcriptional regulators compare
Echvi_0724 +0.9 2.4 hypothetical protein compare
Echvi_2497 +0.9 5.4 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Echvi_4383 +0.9 1.1 hypothetical protein compare
Echvi_2984 +0.9 2.9 hypothetical protein compare
Echvi_1069 +0.9 7.5 3-hydroxyacyl-CoA dehydrogenase compare
Echvi_2445 +0.9 6.1 PAS domain S-box compare
Echvi_3701 +0.9 3.8 hypothetical protein compare
Echvi_3339 +0.9 1.9 hypothetical protein compare
Echvi_3468 +0.9 6.6 Na+/proline symporter compare
Echvi_3456 +0.9 2.2 Uncharacterized protein conserved in bacteria compare
Echvi_2955 +0.9 2.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Echvi_2203 +0.9 3.6 ATP:cob(I)alamin adenosyltransferase compare
Echvi_3958 +0.9 3.5 hypothetical protein compare
Echvi_1493 +0.9 2.9 hypothetical protein compare
Echvi_2839 +0.8 2.4 hypothetical protein compare
Echvi_4582 +0.8 1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_0796 +0.8 1.5 hypothetical protein compare
Echvi_1755 +0.8 6.3 ABC-type multidrug transport system, ATPase and permease components compare
Echvi_2586 +0.8 1.2 hypothetical protein compare
Echvi_1865 +0.8 1.4 hypothetical protein compare
Echvi_1300 +0.8 5.4 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 compare
Echvi_0203 +0.8 4.7 Transcriptional regulator compare
Echvi_4351 +0.8 1.1 DNA repair proteins compare
Echvi_2317 +0.8 1.0 pyruvate kinase compare
Echvi_3466 +0.8 7.0 Uncharacterized proteins, LmbE homologs compare
Echvi_4666 +0.8 1.3 Cold shock proteins compare
Echvi_0091 +0.8 2.0 glycine cleavage system T protein compare
Echvi_3775 +0.8 4.8 Arylsulfatase A and related enzymes compare
Echvi_1892 +0.8 2.9 Molybdopterin-guanine dinucleotide biosynthesis protein A compare
Echvi_1893 +0.8 2.2 molybdenum cofactor biosynthesis protein MoaC compare
Echvi_1771 +0.8 5.0 Glycerol-3-phosphate dehydrogenase compare
Echvi_3195 +0.8 1.9 hypothetical protein compare
Echvi_0670 +0.8 4.1 DNA polymerase elongation subunit (family B) compare
Echvi_1727 +0.8 5.5 ABC-type multidrug transport system, ATPase and permease components compare
Echvi_0293 +0.7 3.3 hypothetical protein compare
Echvi_3296 +0.7 2.6 Deoxyhypusine synthase compare
Echvi_0845 +0.7 4.4 hypothetical protein compare
Echvi_1386 +0.7 1.1 hypothetical protein compare
Echvi_3051 +0.7 5.1 Ferritin-like protein compare
Echvi_0711 +0.7 1.8 hypothetical protein compare
Echvi_0954 +0.7 6.1 SusD family. compare
Echvi_1980 +0.7 1.1 hypothetical protein compare
Echvi_2993 +0.7 2.6 Predicted CoA-binding protein compare
Echvi_4389 +0.7 6.6 hypothetical protein compare
Echvi_4375 +0.7 1.2 hypothetical protein compare
Echvi_3889 +0.7 4.8 3-oxoacyl-(acyl-carrier-protein) synthase III compare
Echvi_2054 +0.7 1.1 hypothetical protein compare
Echvi_3603 +0.7 0.9 Protein of unknown function (DUF3253). compare
Echvi_0852 +0.7 6.1 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_1070 +0.7 2.5 S23 ribosomal protein. compare
Echvi_3093 +0.7 1.6 hypothetical protein compare
Echvi_3132 +0.7 1.8 Phosphohistidine phosphatase SixA compare
Echvi_2798 +0.7 4.0 Acetyltransferases compare
Echvi_2800 +0.7 2.7 hypothetical protein compare
Echvi_4393 +0.7 6.0 Glycosyltransferase compare
Echvi_3233 +0.7 2.8 hypothetical protein compare
Echvi_2212 +0.7 3.5 hypothetical protein compare
Echvi_2208 +0.7 1.7 Truncated hemoglobins compare
Echvi_0260 +0.7 2.5 Protein of unknown function (DUF3467). compare
Echvi_1728 +0.7 1.6 pseudouridylate synthase I compare
Echvi_3053 +0.7 2.9 Membrane transporters of cations and cationic drugs compare
Echvi_2860 +0.7 2.2 sugar-phosphate isomerases, RpiB/LacA/LacB family compare
Echvi_3764 +0.7 0.9 Predicted transcriptional regulators compare
Echvi_0136 +0.7 2.5 Membrane-bound serine protease (ClpP class) compare
Echvi_2046 +0.6 3.2 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Echvi_1894 +0.6 2.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Echvi_1511 +0.6 3.8 5,10-methenyltetrahydrofolate synthetase compare
Echvi_2202 +0.6 3.0 branched-chain amino acid aminotransferase, group II compare
Echvi_0127 +0.6 1.3 hypothetical protein compare
Echvi_0436 +0.6 1.3 Bacterial mobilisation protein (MobC). compare
Echvi_3885 +0.6 2.8 ATP-dependent protease HslVU, peptidase subunit compare
Echvi_3223 +0.6 1.3 Mn-dependent transcriptional regulator compare
Echvi_4334 +0.6 1.1 hypothetical protein compare
Echvi_1188 +0.6 2.9 Glycine/serine hydroxymethyltransferase compare
Echvi_3715 +0.6 1.8 Predicted Na+-dependent transporter compare
Echvi_2989 +0.6 4.4 Protein of unknown function (DUF1573). compare
Echvi_0201 +0.6 2.4 alanine dehydrogenase compare
Echvi_1019 +0.6 3.1 hypothetical protein compare
Echvi_0096 +0.6 1.0 Predicted pyrophosphatase compare
Echvi_2554 +0.6 1.5 hypothetical protein compare
Echvi_0202 +0.6 4.1 histidine ammonia-lyase compare
Echvi_2410 +0.6 2.0 Acetyltransferases compare
Echvi_3070 +0.6 1.9 hypothetical protein compare
Echvi_0671 +0.6 3.3 hypothetical protein compare
Echvi_0850 +0.6 1.2 Pterin-4a-carbinolamine dehydratase compare
Echvi_1315 +0.6 4.6 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Echvi_3776 +0.6 3.4 Arylsulfatase A and related enzymes compare
Echvi_3670 +0.6 1.0 hypothetical protein compare
Echvi_0133 +0.6 4.3 KWG Leptospira. compare
Echvi_1283 +0.6 1.2 Predicted periplasmic lipoprotein (DUF2291). compare
Echvi_0861 +0.6 2.3 hypothetical protein compare
Echvi_1611 +0.6 2.4 hypothetical protein compare
Echvi_3712 +0.6 1.8 hypothetical protein compare
Echvi_3151 +0.6 1.2 Copper chaperone compare
Echvi_4252 +0.6 2.1 hypothetical protein compare
Echvi_2517 +0.6 1.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Echvi_3040 +0.6 3.4 Membrane proteins related to metalloendopeptidases compare
Echvi_1022 +0.6 3.8 ABC-type spermidine/putrescine transport systems, ATPase components compare


Specific Phenotypes

For 21 genes in this experiment

For stress Sodium nitrite in Echinicola vietnamensis KMM 6221, DSM 17526

For stress Sodium nitrite across organisms