Experiment set1IT037 for Pseudomonas simiae WCS417

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -6.7 -4.6 isopropylmalate isomerase compare
PS417_02005 -6.1 -9.3 glutamate synthase compare
PS417_28220 -5.7 -3.9 LysR family transcriptional regulator compare
PS417_00185 -5.6 -3.9 tryptophan synthase subunit beta compare
PS417_23805 -5.5 -5.4 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -5.4 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_20985 -5.3 -3.7 porin compare
PS417_18585 -5.2 -6.2 3-isopropylmalate dehydrogenase compare
PS417_23800 -5.2 -10.5 ketol-acid reductoisomerase compare
PS417_26740 -5.1 -8.6 homoserine acetyltransferase compare
PS417_18560 -5.1 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23810 -5.0 -13.4 acetolactate synthase 3 catalytic subunit compare
PS417_20125 -5.0 -5.8 phosphoribosylglycinamide formyltransferase compare
PS417_24745 -5.0 -4.8 gamma-glutamyl phosphate reductase compare
PS417_25720 -5.0 -7.6 anthranilate synthase component II compare
PS417_18595 -4.9 -3.6 3-isopropylmalate dehydratase compare
PS417_27040 -4.8 -4.7 3-phosphoglycerate dehydrogenase compare
PS417_04415 -4.8 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -4.8 -17.7 anthranilate synthase component I compare
PS417_01605 -4.7 -3.2 phosphoglycerate mutase compare
PS417_27795 -4.7 -2.1 orotate phosphoribosyltransferase compare
PS417_12855 -4.5 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04420 -4.4 -11.4 histidinol dehydrogenase compare
PS417_02000 -4.4 -14.1 glutamate synthase compare
PS417_07640 -4.4 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01575 -4.4 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26995 -4.4 -11.1 phosphoserine phosphatase compare
PS417_16465 -4.3 -11.8 sirohydrochlorin ferrochelatase compare
PS417_02510 -4.3 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26745 -4.3 -8.2 methionine biosynthesis protein MetW compare
PS417_26890 -4.2 -8.4 dihydroxy-acid dehydratase compare
PS417_18530 -4.1 -6.1 O-succinylhomoserine sulfhydrylase compare
PS417_23545 -4.1 -4.2 gamma-glutamyl kinase compare
PS417_02415 -4.0 -7.6 phosphoserine phosphatase compare
PS417_25715 -4.0 -5.6 anthranilate phosphoribosyltransferase compare
PS417_01850 -4.0 -9.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06375 -3.9 -1.7 deoxycytidine triphosphate deaminase compare
PS417_23995 -3.9 -1.7 preprotein translocase subunit SecG compare
PS417_05595 -3.8 -7.7 ornithine carbamoyltransferase compare
PS417_01565 -3.7 -7.2 imidazole glycerol phosphate synthase compare
PS417_26730 -3.5 -2.2 pyrroline-5-carboxylate reductase compare
PS417_27835 -3.4 -6.7 endoribonuclease compare
PS417_27195 -3.3 -2.0 N-acetylglutamate synthase compare
PS417_08125 -3.3 -2.1 prephenate dehydratase compare
PS417_25710 -3.2 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_12290 -3.2 -7.6 sulfite reductase compare
PS417_00180 -3.1 -3.1 tryptophan synthase subunit alpha compare
PS417_01580 -3.0 -1.5 imidazole glycerol phosphate synthase compare
PS417_01570 -2.9 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23110 -2.7 -5.1 2-isopropylmalate synthase compare
PS417_20160 -2.5 -5.1 cysteine synthase compare
PS417_04365 -2.4 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23770 -2.3 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_21020 -2.1 -12.7 phosphoenolpyruvate synthase conserved
PS417_08205 -2.1 -4.2 acetyltransferase compare
PS417_21705 -1.8 -5.5 arginine N-succinyltransferase compare
PS417_01560 -1.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
PS417_24155 -1.7 -2.6 ATP-binding protein compare
PS417_25985 -1.7 -2.8 dethiobiotin synthetase compare
PS417_18690 -1.6 -4.6 aromatic amino acid aminotransferase compare
PS417_08245 -1.6 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08200 -1.5 -4.0 hypothetical protein compare
PS417_03465 -1.5 -2.1 type III secretion protein compare
PS417_01210 -1.5 -7.1 hypothetical protein compare
PS417_21125 -1.5 -6.5 phosphoadenosine phosphosulfate reductase compare
PS417_27435 -1.5 -5.1 polyphosphate kinase compare
PS417_07170 -1.5 -3.2 hypothetical protein compare
PS417_08195 -1.5 -7.8 hypothetical protein compare
PS417_20610 -1.5 -2.1 hypothetical protein compare
PS417_08335 -1.4 -2.0 hypothetical protein compare
PS417_08230 -1.4 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21700 -1.4 -4.5 arginine N-succinyltransferase compare
PS417_24835 -1.4 -4.3 hypothetical protein compare
PS417_23375 -1.4 -2.7 cytochrome C oxidase compare
PS417_08225 -1.3 -2.7 acetolactate synthase compare
PS417_26005 -1.3 -6.6 biotin synthase compare
PS417_05455 -1.3 -5.3 XRE family transcriptional regulator compare
PS417_00960 -1.3 -2.6 transcriptional regulator compare
PS417_25825 -1.3 -2.8 sulfurtransferase compare
PS417_26540 -1.3 -7.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_03310 -1.3 -5.1 carbonate dehydratase compare
PS417_00455 -1.2 -1.7 hypothetical protein compare
PS417_00370 -1.2 -1.5 hypothetical protein compare
PS417_06645 -1.2 -5.5 RNA polymerase-associated protein RapA compare
PS417_08155 -1.2 -1.5 integration host factor subunit beta compare
PS417_22570 -1.2 -1.0 H-NS histone compare
PS417_04180 -1.2 -2.2 GntR family transcriptional regulator compare
PS417_19620 -1.2 -1.3 hypothetical protein compare
PS417_04410 -1.2 -1.4 hypothetical protein compare
PS417_05025 -1.1 -2.2 maleylacetoacetate isomerase compare
PS417_27010 -1.1 -7.1 threonine dehydratase compare
PS417_23380 -1.1 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_18590 -1.1 -2.4 SAM-dependent methyltransferase compare
PS417_04380 -1.1 -1.9 ABC transporter permease compare
PS417_13510 -1.1 -1.5 polyketide cyclase compare
PS417_24105 -1.1 -6.4 D-lactate transporter (lctP family) (from data) conserved
PS417_22375 -1.1 -1.1 cold-shock protein compare
PS417_15750 -1.1 -1.5 protease compare
PS417_07875 -1.1 -1.2 hypothetical protein compare
PS417_26725 -1.0 -3.5 hypothetical protein compare
PS417_02690 -1.0 -4.2 N-acylglucosamine 2-epimerase compare
PS417_04500 -1.0 -2.0 hypothetical protein compare
PS417_01710 -1.0 -4.5 histidine utilization repressor compare
PS417_26000 -1.0 -5.2 8-amino-7-oxononanoate synthase compare
PS417_20665 -1.0 -4.2 hypothetical protein compare
PS417_09915 -1.0 -1.2 hypothetical protein compare
PS417_16490 -1.0 -2.4 cell division protein FtsK compare
PS417_18780 -1.0 -1.6 flavin reductase compare
PS417_21690 -1.0 -4.5 N-succinylarginine dihydrolase compare
PS417_13800 -0.9 -2.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06680 -0.9 -5.8 nuclease PIN compare
PS417_07595 -0.9 -2.5 PasA protein compare
PS417_27595 -0.9 -2.0 recombinase XerC compare
PS417_01290 -0.9 -1.5 ADP-ribose diphosphatase compare
PS417_05165 -0.9 -2.3 cytosol aminopeptidase compare
PS417_00510 -0.9 -1.1 membrane protein compare
PS417_22520 -0.9 -1.9 histidine kinase compare
PS417_21000 -0.9 -1.3 CrfX protein compare
PS417_14655 -0.9 -1.2 lysine transporter LysE compare
PS417_06145 -0.9 -1.1 hypothetical protein compare
PS417_11885 -0.9 -2.4 Inositol transport system sugar-binding protein (from data) compare
PS417_02555 -0.8 -6.5 exoribonuclease R compare
PS417_11705 -0.8 -4.1 cyclic peptide transporter compare
PS417_00550 -0.8 -0.9 hypothetical protein compare
PS417_23370 -0.8 -3.0 protoheme IX farnesyltransferase compare
PS417_05975 -0.8 -0.9 chemotaxis protein CheW compare
PS417_23385 -0.8 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_16990 -0.8 -4.3 acyl-CoA dehydrogenase compare
PS417_11440 -0.8 -1.8 hypothetical protein compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_01965 -0.8 -1.5 fimbriae biosynthesis protein compare
PS417_10480 -0.8 -1.5 glutathione S-transferase compare
PS417_10995 -0.8 -1.3 GntR family transcriptional regulator compare
PS417_10870 -0.8 -2.3 GABA permease compare
PS417_17545 -0.8 -2.3 2-oxoisovalerate dehydrogenase compare
PS417_17240 -0.8 -2.1 trigger factor compare
PS417_16520 -0.8 -2.0 cold-shock protein compare
PS417_28280 -0.8 -3.2 hypothetical protein compare
PS417_17305 -0.8 -1.2 hypothetical protein compare
PS417_25990 -0.8 -3.2 malonyl-CoA O-methyltransferase compare
PS417_18760 -0.8 -1.2 hypothetical protein compare
PS417_11615 -0.8 -1.1 urea ABC transporter ATP-binding protein compare
PS417_08620 -0.8 -0.9 hypothetical protein compare
PS417_03785 -0.8 -1.2 pilus assembly protein PilV compare
PS417_05570 -0.8 -3.2 DeoR faimly transcriptional regulator compare
PS417_10920 -0.8 -2.6 LysR family transcriptional regulator compare
PS417_24535 -0.8 -1.2 membrane protein compare
PS417_03560 -0.8 -1.5 GTP-binding protein compare
PS417_16495 -0.8 -2.8 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_06200 -0.8 -3.1 protein-PII uridylyltransferase compare
PS417_22445 -0.7 -2.5 ATP-dependent DNA helicase RuvB compare
PS417_05695 -0.7 -2.5 transcriptional regulator compare
PS417_26155 -0.7 -2.2 hypothetical protein compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_22450 -0.7 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_12355 -0.7 -1.8 magnesium chelatase compare
PS417_18445 -0.7 -2.1 glycerol-3-phosphatase compare
PS417_26850 -0.7 -0.8 twin-arginine translocation pathway signal protein compare
PS417_16715 -0.7 -1.3 DoxX family protein compare
PS417_04800 -0.7 -1.7 alginate O-acetyltransferase compare
PS417_23615 -0.7 -1.2 sulfate transporter compare
PS417_22115 -0.7 -2.3 transcriptional regulator compare
PS417_08025 -0.7 -0.9 acetylornithine aminotransferase compare
PS417_14515 -0.7 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_06530 -0.7 -2.0 membrane protein compare
PS417_21025 -0.7 -3.0 PEP synthetase regulatory protein compare
PS417_16665 -0.7 -1.6 hypothetical protein compare
PS417_01915 -0.7 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20825 -0.7 -2.0 drug:proton antiporter compare
PS417_14565 -0.7 -2.6 chemotaxis protein compare
PS417_16035 -0.7 -2.5 ABC transporter substrate-binding protein compare
PS417_12515 -0.7 -1.3 lactate dehydrogenase compare
PS417_21425 -0.7 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_18420 -0.7 -1.5 deoxyribonuclease compare
PS417_27875 -0.7 -3.7 histidine kinase compare
PS417_15780 -0.6 -2.1 membrane protein compare
PS417_01995 -0.6 -0.9 hypothetical protein compare
PS417_21510 -0.6 -1.3 histidine kinase compare
PS417_24630 -0.6 -1.8 ATP-binding protein compare
PS417_12245 -0.6 -1.5 GNAT family acetyltransferase compare
PS417_12660 -0.6 -1.3 hypothetical protein compare
PS417_24705 -0.6 -2.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_27690 -0.6 -2.1 XRE family transcriptional regulator compare
PS417_11770 -0.6 -1.4 pyruvate dehydrogenase compare
PS417_28450 -0.6 -1.3 XRE family transcriptional regulator compare
PS417_21655 -0.6 -0.9 aspartate kinase compare
PS417_00650 -0.6 -0.7 LysR family transcriptional regulator compare
PS417_22260 -0.6 -2.0 segregation and condensation protein B compare
PS417_27865 -0.6 -2.1 LysR family transcriptional regulator compare
PS417_21360 -0.6 -0.9 termination factor Rho compare
PS417_19130 -0.6 -4.3 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) compare
PS417_07870 -0.6 -1.1 hypothetical protein compare
PS417_00085 -0.6 -1.5 16S rRNA methyltransferase compare
PS417_03385 -0.6 -0.9 flavin reductase compare
PS417_09150 -0.6 -1.2 energy transducer TonB compare
PS417_23210 -0.6 -1.4 serine acetyltransferase compare
PS417_24620 -0.6 -1.6 hypothetical protein compare
PS417_24650 -0.6 -1.2 membrane protein compare
PS417_21725 -0.6 -2.0 amino acid transporter compare
PS417_22050 -0.6 -2.7 ribonuclease BN compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium D,L-Lactate across organisms