Experiment set1IT037 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0111 -6.9 -1.4 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2585 -5.2 -1.8 pyrroline-5-carboxylate reductase compare
EX28DRAFT_0331 -4.7 -2.8 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2635 -4.6 -8.5 Fructose-2,6-bisphosphatase compare
EX28DRAFT_0272 -4.6 -1.3 phosphohistidine phosphatase, SixA compare
EX28DRAFT_4123 -4.6 -3.6 transcriptional regulator, DeoR family compare
EX28DRAFT_2531 -4.5 -4.3 endopeptidase La compare
EX28DRAFT_0286 -4.4 -2.0 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2548 -4.4 -5.4 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2851 -4.3 -2.5 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_0334 -4.3 -2.3 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_4418 -4.2 -7.9 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2774 -4.2 -6.1 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_4422 -4.2 -4.7 argininosuccinate lyase compare
EX28DRAFT_4419 -4.1 -1.6 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_1123 -3.9 -7.2 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_4155 -3.9 -3.6 DNA adenine methylase (dam) compare
EX28DRAFT_4153 -3.9 -1.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3224 -3.7 -2.6 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_2985 -3.7 -8.6 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2027 -3.7 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2252 -3.5 -1.7 TolA protein compare
EX28DRAFT_2916 -3.4 -8.2 diaminopimelate decarboxylase compare
EX28DRAFT_3461 -3.4 -2.8 ornithine carbamoyltransferase compare
EX28DRAFT_2117 -3.4 -11.8 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_2893 -3.4 -5.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_1122 -3.4 -7.4 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_1124 -3.3 -12.1 sucrose-6-phosphate hydrolase compare
EX28DRAFT_3898 -3.2 -1.8 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_4544 -3.2 -0.6 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_4341 -3.2 -2.5 Protein-disulfide isomerase compare
EX28DRAFT_1986 -3.1 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4061 -3.1 -3.8 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_4421 -3.1 -0.6 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4158 -3.0 -2.0 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2650 -3.0 -3.4 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_0972 -3.0 -2.2 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0125 -2.9 -0.8 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_3645 -2.9 -4.8 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2958 -2.9 -1.6 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2701 -2.9 -5.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2846 -2.9 -3.9 adenylyl-sulfate kinase compare
EX28DRAFT_3614 -2.8 -5.9 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4386 -2.8 -2.5 Signal transduction histidine kinase compare
EX28DRAFT_4297 -2.7 -1.7 cell division ATP-binding protein FtsE compare
EX28DRAFT_2651 -2.7 -5.2 glutamate 5-kinase compare
EX28DRAFT_3401 -2.7 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0228 -2.6 -1.4 tRNA compare
EX28DRAFT_0328 -2.6 -1.6 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2118 -2.6 -2.1 arsenate reductase (glutaredoxin) compare
EX28DRAFT_2250 -2.5 -2.1 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3087 -2.5 -6.0 acyl-phosphate glycerol 3-phosphate acyltransferase compare
EX28DRAFT_3675 -2.4 -7.7 transcriptional regulator, LacI family compare
EX28DRAFT_4156 -2.4 -1.9 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4170 -2.4 -6.7 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_2945 -2.4 -1.7 tyrosine recombinase XerD compare
EX28DRAFT_4383 -2.4 -7.7 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_4015 -2.4 -3.8 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_2864 -2.4 -8.8 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0166 -2.3 -8.8 polyphosphate kinase 1 compare
EX28DRAFT_4452 -2.3 -1.7 thioredoxin compare
EX28DRAFT_3070 -2.3 -2.0 Predicted phosphohydrolases compare
EX28DRAFT_2917 -2.3 -3.6 Transcriptional regulator compare
EX28DRAFT_4493 -2.3 -3.6 Transcriptional regulator compare
EX28DRAFT_4300 -2.2 -1.6 Predicted membrane protein compare
EX28DRAFT_2265 -2.2 -0.6 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0046 -2.2 -1.8 shikimate dehydrogenase compare
EX28DRAFT_4437 -2.1 -3.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0934 -2.1 -7.8 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0322 -2.1 -6.6 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_3376 -2.1 -7.3 ribonuclease R compare
EX28DRAFT_0327 -2.1 -4.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0970 -2.0 -2.7 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0325 -2.0 -3.5 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2721 -2.0 -2.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0214 -2.0 -3.0 cysteine synthase A compare
EX28DRAFT_4121 -1.9 -1.2 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4420 -1.9 -0.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2272 -1.9 -5.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0593 -1.9 -9.7 DNA-methyltransferase (dcm) compare
EX28DRAFT_0533 -1.9 -3.2 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_2043 -1.9 -4.6 transcriptional regulator, AsnC family compare
EX28DRAFT_3081 -1.9 -10.4 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_2702 -1.8 -4.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0332 -1.8 -6.3 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_4018 -1.8 -2.0 Flavodoxins compare
EX28DRAFT_0108 -1.7 -0.9 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0073 -1.7 -1.0 Negative regulator of sigma E activity compare
EX28DRAFT_0693 -1.7 -1.4 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_1684 -1.7 -4.7 FeS assembly protein SufD compare
EX28DRAFT_2313 -1.7 -5.6 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_2421 -1.7 -1.4 Protein of unknown function (DUF1158) compare
EX28DRAFT_2852 -1.7 -5.3 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_4436 -1.6 -3.9 Transcriptional regulator compare
EX28DRAFT_4507 -1.6 -4.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0333 -1.6 -4.4 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0534 -1.6 -2.6 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_2169 -1.6 -4.7 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2853 -1.6 -3.9 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_2045 -1.6 -0.9 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0330 -1.6 -3.3 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_3883 -1.5 -2.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0329 -1.5 -4.0 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_4397 -1.5 -4.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_0948 -1.5 -1.0 hypothetical protein compare
EX28DRAFT_1374 -1.5 -0.9 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_1649 -1.5 -5.3 lactoylglutathione lyase compare
EX28DRAFT_1542 -1.5 -5.7 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_4479 -1.5 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3297 -1.5 -4.5 ribonuclease, Rne/Rng family compare
EX28DRAFT_2682 -1.5 -6.9 hydroxyacylglutathione hydrolase compare
EX28DRAFT_4191 -1.5 -2.8 small GTP-binding protein domain compare
EX28DRAFT_0038 -1.5 -1.9 K+ transport systems, NAD-binding component compare
EX28DRAFT_1626 -1.5 -1.8 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_1500 -1.4 -1.9 Predicted transcriptional regulators compare
EX28DRAFT_0540 -1.4 -3.5 ATP phosphoribosyltransferase compare
EX28DRAFT_3616 -1.4 -1.8 threonine synthase compare
EX28DRAFT_1650 -1.4 -1.6 ribonuclease T compare
EX28DRAFT_2904 -1.4 -8.5 phosphoenolpyruvate-protein phosphotransferase compare
EX28DRAFT_2050 -1.4 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_4271 -1.4 -0.6 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3613 -1.4 -4.0 RNA compare
EX28DRAFT_1167 -1.4 -0.7 Uncharacterized conserved protein compare
EX28DRAFT_0313 -1.4 -4.0 acetate kinase compare
EX28DRAFT_0091 -1.3 -0.6 hypothetical protein compare
EX28DRAFT_1310 -1.3 -1.7 phage replication protein P compare
EX28DRAFT_3754 -1.3 -0.6 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0738 -1.3 -2.8 Predicted membrane protein compare
EX28DRAFT_0494 -1.3 -1.7 Protein-tyrosine-phosphatase compare
EX28DRAFT_0323 -1.3 -3.2 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2847 -1.3 -7.1 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0538 -1.3 -3.3 histidinol-phosphate aminotransferase compare
EX28DRAFT_0933 -1.2 -5.9 tryptophan synthase, beta subunit compare
EX28DRAFT_4120 -1.2 -3.0 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_2654 -1.2 -4.2 Alpha/beta hydrolase of unknown function (DUF1100) compare
EX28DRAFT_4459 -1.2 -4.0 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_3278 -1.2 -1.7 Glutathione S-transferase compare
EX28DRAFT_3711 -1.2 -0.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3730 -1.2 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_3698 -1.2 -1.6 guanosine monophosphate reductase, eukaryotic compare
EX28DRAFT_0726 -1.2 -2.0 C-terminal peptidase (prc) compare
EX28DRAFT_0632 -1.2 -2.6 Protein of unknown function (DUF2594) compare
EX28DRAFT_3879 -1.2 -1.9 Glycosyltransferase compare
EX28DRAFT_1130 -1.2 -1.6 RNA polymerase sigma factor, sigma-70 family compare
EX28DRAFT_2240 -1.2 -2.0 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_1771 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0170 -1.1 -4.0 uracil phosphoribosyltransferase (EC 2.4.2.9) compare
EX28DRAFT_0936 -1.1 -2.6 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_4064 -1.1 -3.7 Putative SAM-dependent methyltransferase compare
EX28DRAFT_1682 -1.1 -4.9 SufE protein probably involved in Fe-S center assembly compare
EX28DRAFT_2589 -1.1 -0.7 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_3073 -1.1 -3.5 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_1683 -1.1 -4.7 cysteine desulfurases, SufSfamily compare
EX28DRAFT_2938 -1.1 -1.4 tRNA compare
EX28DRAFT_2497 -1.1 -3.5 Biofilm formation regulator YbaJ compare
EX28DRAFT_1988 -1.1 -4.6 Predicted ATP-dependent protease compare
EX28DRAFT_0440 -1.1 -3.7 ATPases involved in chromosome partitioning compare
EX28DRAFT_1839 -1.1 -4.0 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_2532 -1.1 -1.2 RNA compare
EX28DRAFT_1941 -1.1 -1.0 Protein of unknown function (DUF4089) compare
EX28DRAFT_0535 -1.1 -1.8 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2277 -1.0 -1.1 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_1686 -1.0 -4.9 FeS assembly protein SufB compare
EX28DRAFT_0922 -1.0 -1.3 TonB family C-terminal domain compare
EX28DRAFT_3372 -1.0 -2.1 HflC protein compare
EX28DRAFT_1376 -1.0 -0.9 hypothetical protein compare
EX28DRAFT_3849 -1.0 -2.0 PTS system, mannitol-specific IIC component compare
EX28DRAFT_4446 -1.0 -4.3 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_1508 -1.0 -1.4 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_2213 -1.0 -1.7 dethiobiotin synthase compare
EX28DRAFT_3900 -1.0 -1.7 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_1493 -1.0 -2.6 Transcriptional regulator/sugar kinase compare
EX28DRAFT_1281 -1.0 -2.3 hypothetical protein compare
EX28DRAFT_4296 -1.0 -3.2 putative protein insertion permease FtsX compare
EX28DRAFT_1573 -1.0 -0.6 hypothetical protein compare
EX28DRAFT_3410 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_4246 -1.0 -7.1 excinuclease ABC, A subunit compare
EX28DRAFT_0539 -1.0 -2.9 histidinol dehydrogenase compare
EX28DRAFT_1584 -1.0 -1.7 hypothetical protein compare
EX28DRAFT_0324 -1.0 -1.5 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4406 -1.0 -1.5 cell division protein FtsN compare
EX28DRAFT_0783 -1.0 -2.8 ABC-type phosphate/phosphonate transport system, periplasmic component compare
EX28DRAFT_2565 -1.0 -5.1 tRNA-guanine transglycosylase compare
EX28DRAFT_3302 -1.0 -5.2 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_4157 -1.0 -4.1 2-phosphoglycolate phosphatase, prokaryotic compare
EX28DRAFT_1685 -1.0 -3.2 FeS assembly ATPase SufC compare
EX28DRAFT_1620 -1.0 -0.7 hypothetical protein compare
EX28DRAFT_0537 -1.0 -3.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_1398 -1.0 -2.1 hypothetical protein compare
EX28DRAFT_4426 -1.0 -0.8 transcriptional regulator, TetR family compare
EX28DRAFT_1625 -1.0 -1.9 electron transport complex, RnfABCDGE type, C subunit compare
EX28DRAFT_0764 -1.0 -3.2 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_2999 -1.0 -1.9 Fe-S cluster protector protein compare
EX28DRAFT_0974 -1.0 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
EX28DRAFT_3315 -0.9 -0.8 Protein of unknown function (DUF2556) compare
EX28DRAFT_3368 -0.9 -0.6 tRNA dimethylallyltransferase compare
EX28DRAFT_0321 -0.9 -0.6 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_3426 -0.9 -0.7 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2720 -0.9 -4.8 Small protein A (tmRNA-binding) compare
EX28DRAFT_3476 -0.9 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms