Experiment set1IT037 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_4003 +9.0 33.4 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_3643 +5.9 19.5 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0350 +3.7 28.5 glycerol-3-phosphate transporter compare
EX28DRAFT_3644 +3.1 3.4 Uncharacterized protein affecting Mg2+/Co2+ transport compare
EX28DRAFT_1125 +2.7 17.8 D-fructose-responsive transcription factor compare
EX28DRAFT_3725 +2.5 20.1 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
EX28DRAFT_3724 +2.1 12.7 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_4399 +1.9 14.1 glycerol kinase compare
EX28DRAFT_4269 +1.8 2.6 SOS regulatory protein LexA compare
EX28DRAFT_1719 +1.6 1.1 integration host factor, alpha subunit compare
EX28DRAFT_2578 +1.6 8.6 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0940 +1.5 9.8 pseudouridine synthase compare
EX28DRAFT_4445 +1.5 4.7 Transcriptional regulator compare
EX28DRAFT_4085 +1.5 7.3 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_0712 +1.4 1.2 DNA polymerase III, theta subunit compare
EX28DRAFT_0292 +1.4 1.5 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2866 +1.4 12.3 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_4347 +1.4 1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0127 +1.4 5.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2298 +1.3 8.9 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_0521 +1.3 3.9 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2574 +1.3 4.1 phosphate regulon sensor kinase PhoR compare
EX28DRAFT_4490 +1.3 5.9 Lysophospholipase compare
EX28DRAFT_0160 +1.1 1.9 hypothetical protein compare
EX28DRAFT_2541 +1.1 1.7 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1894 +1.0 2.3 Uncharacterized component of anaerobic dehydrogenases compare
EX28DRAFT_0633 +1.0 9.7 two component transcriptional regulator, LuxR family compare
EX28DRAFT_3419 +1.0 7.1 Fructose-1,6-bisphosphatase compare
EX28DRAFT_4045 +1.0 7.3 Bacterial cellulose synthase subunit compare
EX28DRAFT_4267 +1.0 2.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1497 +1.0 1.1 hypothetical protein compare
EX28DRAFT_0897 +1.0 0.9 P2-like prophage tail protein X compare
EX28DRAFT_0065 +0.9 1.1 thioredoxin compare
EX28DRAFT_4044 +0.9 7.3 cellulose synthase catalytic subunit (UDP-forming) compare
EX28DRAFT_3670 +0.9 5.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_3893 +0.9 1.5 ribonuclease PH compare
EX28DRAFT_3282 +0.9 1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3671 +0.9 3.3 RNA compare
EX28DRAFT_1273 +0.9 1.1 hypothetical protein compare
EX28DRAFT_1218 +0.9 1.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
EX28DRAFT_2299 +0.9 5.6 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2348 +0.9 0.7 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_0358 +0.9 3.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_0351 +0.9 4.2 Glycerophosphoryl diester phosphodiesterase compare
EX28DRAFT_0791 +0.9 1.2 type VI secretion-associated protein, BMA_A0400 family compare
EX28DRAFT_4047 +0.9 7.0 Tetratricopeptide repeat/Cellulose synthase operon protein C C-terminus (BCSC_C)/TPR repeat compare
EX28DRAFT_4350 +0.9 0.6 nitrogen regulation protein NR(I) compare
EX28DRAFT_2175 +0.8 1.7 hypothetical protein compare
EX28DRAFT_2681 +0.8 5.7 Methyltransferase domain compare
EX28DRAFT_0620 +0.8 1.0 Flagellar protein FliT compare
EX28DRAFT_0526 +0.8 1.9 hypothetical protein compare
EX28DRAFT_1610 +0.8 2.4 mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8) compare
EX28DRAFT_2649 +0.8 1.9 tRNA compare
EX28DRAFT_0631 +0.8 5.4 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_3498 +0.8 0.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
EX28DRAFT_2519 +0.8 1.2 nitrogen regulatory protein P-II family compare
EX28DRAFT_4043 +0.8 5.2 cellulose synthase operon protein YhjQ compare
EX28DRAFT_3233 +0.8 1.8 RNA compare
EX28DRAFT_2067 +0.8 1.3 Transglycosylase SLT domain compare
EX28DRAFT_0069 +0.8 0.9 Superfamily II DNA and RNA helicases compare
EX28DRAFT_1417 +0.8 2.2 phenylacetate-CoA oxygenase, PaaJ subunit compare
EX28DRAFT_3929 +0.8 1.6 Predicted Zn-dependent hydrolases of the beta-lactamase fold compare
EX28DRAFT_1295 +0.8 2.0 Protein of unknown function (DUF2570) compare
EX28DRAFT_2243 +0.8 1.6 cation diffusion facilitator family transporter compare
EX28DRAFT_3719 +0.8 3.1 Bacterial chaperone lipoprotein (PulS_OutS) compare
EX28DRAFT_0177 +0.7 1.4 arsenate reductase (glutaredoxin) compare
EX28DRAFT_2814 +0.7 2.1 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
EX28DRAFT_3778 +0.7 2.0 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_2379 +0.7 1.7 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
EX28DRAFT_3825 +0.7 1.4 YsaB-like lipoprotein compare
EX28DRAFT_0545 +0.7 1.3 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2655 +0.7 2.2 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins compare
EX28DRAFT_4181 +0.7 1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_2509 +0.7 1.6 transcriptional regulator, LacI family compare
EX28DRAFT_0883 +0.7 1.9 hypothetical protein compare
EX28DRAFT_0524 +0.7 2.8 hypothetical protein compare
EX28DRAFT_3583 +0.7 2.8 peptide chain release factor 3 compare
EX28DRAFT_2786 +0.7 2.0 amidohydrolase, PncC family compare
EX28DRAFT_1385 +0.7 2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_3752 +0.7 1.8 Protein of unknown function (DUF3461) compare
EX28DRAFT_2630 +0.7 1.8 hypothetical protein compare
EX28DRAFT_4318 +0.7 2.1 Glucose-6-phosphate isomerase compare
EX28DRAFT_2467 +0.7 2.5 Thioredoxin domain-containing protein compare
EX28DRAFT_1293 +0.7 0.6 hypothetical protein compare
EX28DRAFT_2995 +0.7 1.7 Protein of unknown function (DUF2884) compare
EX28DRAFT_1056 +0.7 0.8 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_3163 +0.7 4.0 Uncharacterized membrane-associated protein compare
EX28DRAFT_1019 +0.7 1.1 Putative hemolysin compare
EX28DRAFT_0382 +0.7 1.5 ABC-type uncharacterized transport system, permease component compare
EX28DRAFT_1640 +0.7 1.2 Protein of unknown function (DUF1656) compare
EX28DRAFT_0854 +0.7 2.3 respiratory nitrate reductase, gamma subunit compare
EX28DRAFT_0800 +0.7 2.1 FHA domain protein compare
EX28DRAFT_2259 +0.6 2.6 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_2543 +0.6 3.2 protoheme IX farnesyltransferase compare
EX28DRAFT_2576 +0.6 4.4 Exodeoxyribonuclease I subunit D (EC 3.1.11.1) compare
EX28DRAFT_0594 +0.6 0.6 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_3288 +0.6 1.9 Protein of unknown function (DUF1471) compare
EX28DRAFT_0129 +0.6 0.7 RNA compare
EX28DRAFT_1303 +0.6 0.9 hypothetical protein compare
EX28DRAFT_4086 +0.6 3.7 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
EX28DRAFT_2491 +0.6 1.4 restart primosome assembly protein PriC compare
EX28DRAFT_2539 +0.6 1.8 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0686 +0.6 2.2 tRNA (mo5U34)-methyltransferase compare
EX28DRAFT_4041 +0.6 3.9 cellulose biosynthesis protein BcsE compare
EX28DRAFT_2442 +0.6 2.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_4040 +0.6 2.6 celllulose biosynthesis operon protein BcsF/YhjT compare
EX28DRAFT_2447 +0.6 1.9 P pilus assembly protein, pilin FimA compare
EX28DRAFT_0528 +0.6 0.9 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_2441 +0.6 4.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_4443 +0.6 2.8 dihydroxy-acid dehydratase compare
EX28DRAFT_0066 +0.6 2.9 rRNA methylases compare
EX28DRAFT_4324 +0.6 0.9 probable addiction module antidote protein compare
EX28DRAFT_2984 +0.6 2.6 RNA methyltransferase, RsmE family compare
EX28DRAFT_3267 +0.6 3.6 Leucyl aminopeptidase compare
EX28DRAFT_0803 +0.6 1.5 Protein of avirulence locus involved in temperature-dependent protein secretion compare
EX28DRAFT_4039 +0.6 3.5 cellulose synthase operon protein YhjU compare
EX28DRAFT_1841 +0.6 0.8 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3923 +0.6 2.2 Predicted transcriptional regulators compare
EX28DRAFT_3980 +0.6 1.2 2-keto-3-deoxy-6-phosphogluconate aldolase compare
EX28DRAFT_4203 +0.6 0.8 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_0058 +0.6 2.2 23S compare
EX28DRAFT_2136 +0.6 1.6 Asparaginase compare
EX28DRAFT_4133 +0.6 4.2 ferrous iron transporter FeoB compare
EX28DRAFT_3696 +0.6 3.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0787 +0.6 2.9 type VI secretion lipoprotein, VC_A0113 family compare
EX28DRAFT_4362 +0.6 1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_2188 +0.6 1.6 P pilus assembly protein, pilin FimA compare
EX28DRAFT_4248 +0.6 2.0 secondary thiamine-phosphate synthase enzyme compare
EX28DRAFT_4244 +0.6 1.1 hypothetical protein compare
EX28DRAFT_1033 +0.6 2.8 Uncharacterized protein conserved in bacteria, putative virulence factor compare
EX28DRAFT_3257 +0.6 3.1 ribosomal subunit interface protein compare
EX28DRAFT_1412 +0.6 1.1 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_0864 +0.6 2.0 thymidine kinase (EC 2.7.1.21) compare
EX28DRAFT_1772 +0.6 1.2 methionine-R-sulfoxide reductase compare
EX28DRAFT_1229 +0.6 3.2 peptidase T compare
EX28DRAFT_2749 +0.6 2.7 FOG: Ankyrin repeat compare
EX28DRAFT_0366 +0.6 2.8 Mg2+ transporter (mgtE) compare
EX28DRAFT_0702 +0.5 2.1 pyruvate kinase compare
EX28DRAFT_1038 +0.5 1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0742 +0.5 2.3 PTS system, mannose/fructose/sorbose family, IIB component compare
EX28DRAFT_2287 +0.5 3.3 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_0789 +0.5 2.8 type VI secretion system peptidoglycan-associated domain compare
EX28DRAFT_0882 +0.5 1.5 hypothetical protein compare
EX28DRAFT_2746 +0.5 1.5 hypothetical protein compare
EX28DRAFT_4400 +0.5 2.8 MIP family channel proteins compare
EX28DRAFT_3556 +0.5 1.1 Uncharacterized secreted protein compare
EX28DRAFT_0261 +0.5 2.1 type VI secretion lipoprotein, VC_A0113 family compare
EX28DRAFT_1913 +0.5 2.3 transcriptional regulator, TetR family compare
EX28DRAFT_0766 +0.5 1.9 Glycine/D-amino acid oxidases (deaminating) compare
EX28DRAFT_2674 +0.5 2.2 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_1643 +0.5 1.2 Cu/Zn superoxide dismutase compare
EX28DRAFT_0221 +0.5 1.1 FlxA-like protein compare
EX28DRAFT_3943 +0.5 1.7 Predicted permease, DMT superfamily compare
EX28DRAFT_4440 +0.5 3.0 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_1375 +0.5 1.9 SnoaL-like domain compare
EX28DRAFT_1604 +0.5 2.7 Putative excisionase (DUF1233) compare
EX28DRAFT_0435 +0.5 3.1 Predicted transcriptional regulators compare
EX28DRAFT_4208 +0.5 2.9 phosphonate C-P lyase system protein PhnK compare
EX28DRAFT_1959 +0.5 1.0 Acyl carrier protein compare
EX28DRAFT_2085 +0.5 1.1 Uncharacterized conserved protein compare
EX28DRAFT_1248 +0.5 1.8 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_3958 +0.5 0.9 hypothetical protein compare
EX28DRAFT_1129 +0.5 1.0 hypothetical protein compare
EX28DRAFT_0179 +0.5 3.3 Predicted permease compare
EX28DRAFT_1277 +0.5 2.6 hypothetical protein compare
EX28DRAFT_2979 +0.5 1.6 Protein of unknown function (DUF2684) compare
EX28DRAFT_3669 +0.5 1.5 3-isopropylmalate dehydrogenase compare
EX28DRAFT_2148 +0.5 2.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3462 +0.5 2.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3606 +0.5 2.5 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_2448 +0.5 2.4 P pilus assembly protein, pilin FimA compare
EX28DRAFT_4177 +0.5 3.0 ATPase components of ABC transporters with duplicated ATPase domains compare
EX28DRAFT_2403 +0.5 2.3 alpha-acetolactate decarboxylase compare
EX28DRAFT_4165 +0.5 1.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
EX28DRAFT_2625 +0.5 2.7 Peptidase family U32 compare
EX28DRAFT_1816 +0.5 3.6 transcription-repair coupling factor (mfd) compare
EX28DRAFT_0336 +0.5 2.1 ribonuclease Z compare
EX28DRAFT_1522 +0.5 1.4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
EX28DRAFT_1975 +0.5 2.4 Raf kinase inhibitor-like protein, YbhB/YbcL family compare
EX28DRAFT_2137 +0.5 2.2 molybdenum cofactor synthesis domain compare
EX28DRAFT_4073 +0.5 2.1 transcriptional regulator, IclR family compare
EX28DRAFT_3137 +0.5 0.6 Predicted transcriptional regulators compare
EX28DRAFT_0456 +0.5 2.1 hypothetical protein compare
EX28DRAFT_2962 +0.5 1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2628 +0.5 3.3 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_2073 +0.5 1.8 type II secretion system protein J compare
EX28DRAFT_1477 +0.5 0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3626 +0.5 1.0 RNA compare
EX28DRAFT_1909 +0.5 1.2 Protein of unknown function (DUF3574) compare
EX28DRAFT_3214 +0.5 1.8 RNA compare
EX28DRAFT_2989 +0.5 2.0 pyridoxal phosphate enzyme, YggS family compare
EX28DRAFT_3839 +0.5 2.0 Helix-turn-helix domain compare
EX28DRAFT_2237 +0.5 2.0 galactose-1-phosphate uridylyltransferase, family 1 compare
EX28DRAFT_4315 +0.5 1.5 Capsule biosynthesis GfcC compare
EX28DRAFT_2289 +0.5 1.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
EX28DRAFT_1881 +0.5 2.9 Membrane glycosyltransferase compare
EX28DRAFT_0478 +0.4 1.0 Collagenase and related proteases compare
EX28DRAFT_0961 +0.4 2.2 exoribonuclease II compare
EX28DRAFT_1845 +0.4 0.8 RNA compare
EX28DRAFT_2809 +0.4 1.6 Formate hydrogenlyase maturation protein HycH compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms