Experiment set1IT036 for Pseudomonas simiae WCS417

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.7 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_24745 -5.8 -6.9 gamma-glutamyl phosphate reductase compare
PS417_18595 -5.5 -6.8 3-isopropylmalate dehydratase compare
PS417_26740 -5.4 -18.4 homoserine acetyltransferase compare
PS417_18585 -5.2 -10.0 3-isopropylmalate dehydrogenase compare
PS417_23545 -5.2 -5.7 gamma-glutamyl kinase compare
PS417_18560 -5.2 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02005 -5.2 -15.9 glutamate synthase compare
PS417_01575 -5.1 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -5.1 -4.3 isopropylmalate isomerase compare
PS417_23805 -5.1 -6.1 acetolactate synthase 3 regulatory subunit compare
PS417_02510 -5.1 -9.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01855 -5.0 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -5.0 -11.2 anthranilate synthase component II compare
PS417_23800 -4.9 -16.1 ketol-acid reductoisomerase compare
PS417_04415 -4.9 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -4.6 -16.8 anthranilate synthase component I compare
PS417_23995 -4.6 -1.8 preprotein translocase subunit SecG compare
PS417_00185 -4.6 -7.1 tryptophan synthase subunit beta compare
PS417_01565 -4.4 -8.2 imidazole glycerol phosphate synthase compare
PS417_27795 -4.3 -2.4 orotate phosphoribosyltransferase compare
PS417_16465 -4.2 -14.9 sirohydrochlorin ferrochelatase compare
PS417_26730 -4.2 -2.3 pyrroline-5-carboxylate reductase compare
PS417_23810 -4.2 -13.4 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -4.1 -12.6 histidinol dehydrogenase compare
PS417_20125 -4.1 -8.1 phosphoribosylglycinamide formyltransferase compare
PS417_02000 -4.1 -13.9 glutamate synthase compare
PS417_28220 -4.1 -4.4 LysR family transcriptional regulator compare
PS417_26995 -4.0 -14.0 phosphoserine phosphatase compare
PS417_01850 -4.0 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01605 -4.0 -3.7 phosphoglycerate mutase compare
PS417_00180 -3.9 -5.3 tryptophan synthase subunit alpha compare
PS417_26745 -3.9 -8.4 methionine biosynthesis protein MetW compare
PS417_18530 -3.8 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_07640 -3.7 -7.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05595 -3.7 -7.4 ornithine carbamoyltransferase compare
PS417_27835 -3.7 -12.9 endoribonuclease compare
PS417_02415 -3.6 -7.5 phosphoserine phosphatase compare
PS417_27195 -3.6 -2.7 N-acetylglutamate synthase compare
PS417_25715 -3.4 -6.1 anthranilate phosphoribosyltransferase compare
PS417_12855 -3.3 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26890 -3.3 -6.3 dihydroxy-acid dehydratase compare
PS417_12290 -3.3 -6.9 sulfite reductase compare
PS417_08125 -3.2 -2.6 prephenate dehydratase compare
PS417_23110 -2.9 -5.9 2-isopropylmalate synthase compare
PS417_25710 -2.9 -2.6 indole-3-glycerol-phosphate synthase compare
PS417_20160 -2.8 -4.2 cysteine synthase compare
PS417_01580 -2.7 -1.6 imidazole glycerol phosphate synthase compare
PS417_04365 -2.6 -1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_20985 -2.4 -5.1 porin compare
PS417_24155 -2.4 -4.1 ATP-binding protein compare
PS417_19130 -2.4 -16.2 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) conserved
PS417_06375 -2.2 -1.8 deoxycytidine triphosphate deaminase compare
PS417_01570 -2.1 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20610 -2.1 -2.8 hypothetical protein compare
PS417_18690 -2.1 -6.0 aromatic amino acid aminotransferase compare
PS417_21705 -2.1 -8.8 arginine N-succinyltransferase compare
PS417_01560 -2.0 -3.0 imidazoleglycerol-phosphate dehydratase compare
PS417_21020 -1.9 -14.1 phosphoenolpyruvate synthase conserved
PS417_23770 -1.9 -3.8 exodeoxyribonuclease V subunit alpha compare
PS417_08245 -1.8 -2.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07170 -1.7 -4.5 hypothetical protein compare
PS417_19125 -1.6 -6.2 LysR family transcriptional regulator conserved
PS417_21125 -1.6 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_08205 -1.6 -4.6 acetyltransferase compare
PS417_27435 -1.4 -6.7 polyphosphate kinase compare
PS417_08200 -1.4 -5.3 hypothetical protein compare
PS417_04410 -1.3 -1.7 hypothetical protein compare
PS417_26005 -1.3 -8.6 biotin synthase compare
PS417_21700 -1.3 -4.6 arginine N-succinyltransferase compare
PS417_01210 -1.3 -8.0 hypothetical protein compare
PS417_25985 -1.3 -3.1 dethiobiotin synthetase compare
PS417_25990 -1.2 -5.2 malonyl-CoA O-methyltransferase compare
PS417_04375 -1.2 -4.0 ABC transporter ATP-binding protein compare
PS417_23375 -1.2 -3.2 cytochrome C oxidase compare
PS417_26000 -1.2 -7.9 8-amino-7-oxononanoate synthase compare
PS417_18590 -1.2 -3.1 SAM-dependent methyltransferase compare
PS417_03310 -1.2 -5.8 carbonate dehydratase compare
PS417_08225 -1.2 -5.6 acetolactate synthase compare
PS417_26540 -1.1 -6.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06645 -1.1 -6.8 RNA polymerase-associated protein RapA compare
PS417_24835 -1.1 -4.5 hypothetical protein compare
PS417_08155 -1.1 -2.5 integration host factor subunit beta compare
PS417_05455 -1.1 -5.6 XRE family transcriptional regulator compare
PS417_08230 -1.1 -1.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_15885 -1.1 -2.9 GCN5 family acetyltransferase compare
PS417_08220 -1.1 -1.0 epimerase compare
PS417_08195 -1.0 -6.4 hypothetical protein compare
PS417_04500 -1.0 -2.3 hypothetical protein compare
PS417_11705 -1.0 -6.1 cyclic peptide transporter compare
PS417_22520 -1.0 -3.0 histidine kinase compare
PS417_24620 -0.9 -2.4 hypothetical protein compare
PS417_16490 -0.9 -2.7 cell division protein FtsK compare
PS417_23370 -0.9 -4.7 protoheme IX farnesyltransferase compare
PS417_27010 -0.9 -5.7 threonine dehydratase compare
PS417_11440 -0.9 -2.5 hypothetical protein compare
PS417_01995 -0.9 -1.5 hypothetical protein compare
PS417_04650 -0.8 -1.7 D-alanine--D-alanine ligase compare
PS417_02555 -0.8 -7.5 exoribonuclease R compare
PS417_13800 -0.8 -3.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20665 -0.8 -4.6 hypothetical protein compare
PS417_00650 -0.8 -1.1 LysR family transcriptional regulator compare
PS417_23385 -0.8 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_21690 -0.8 -4.5 N-succinylarginine dihydrolase compare
PS417_26605 -0.8 -1.4 malonate decarboxylase subunit beta compare
PS417_03785 -0.8 -1.3 pilus assembly protein PilV compare
PS417_13510 -0.8 -1.3 polyketide cyclase compare
PS417_28280 -0.8 -3.1 hypothetical protein compare
PS417_13205 -0.7 -1.5 isochorismate-pyruvate lyase compare
PS417_15285 -0.7 -1.2 type VI secretion protein compare
PS417_06680 -0.7 -5.4 nuclease PIN compare
PS417_02560 -0.7 -2.2 23S rRNA methyltransferase compare
PS417_08045 -0.7 -1.9 uracil permease compare
PS417_26725 -0.7 -2.7 hypothetical protein compare
PS417_04180 -0.7 -2.3 GntR family transcriptional regulator compare
PS417_27035 -0.7 -2.8 FAD-linked oxidase compare
PS417_01965 -0.7 -1.1 fimbriae biosynthesis protein compare
PS417_03465 -0.7 -1.7 type III secretion protein compare
PS417_06200 -0.7 -2.8 protein-PII uridylyltransferase compare
PS417_07595 -0.7 -2.8 PasA protein compare
PS417_02690 -0.7 -3.6 N-acylglucosamine 2-epimerase compare
PS417_22945 -0.6 -2.0 phosphoribosylglycinamide formyltransferase compare
PS417_08580 -0.6 -3.6 histidine kinase compare
PS417_07165 -0.6 -2.4 dihydrodipicolinate synthase compare
PS417_26990 -0.6 -1.3 RNA pyrophosphohydrolase compare
PS417_06685 -0.6 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_17565 -0.6 -1.7 branched-chain amino acid aminotransferase compare
PS417_22565 -0.6 -1.2 formyltetrahydrofolate deformylase compare
PS417_01710 -0.6 -3.8 histidine utilization repressor compare
PS417_17545 -0.6 -2.2 2-oxoisovalerate dehydrogenase compare
PS417_08540 -0.6 -2.4 RNA helicase compare
PS417_08620 -0.6 -0.9 hypothetical protein compare
PS417_24675 -0.6 -1.0 lipoyl synthase compare
PS417_00825 -0.6 -2.8 recombinase RecF compare
PS417_00705 -0.6 -1.4 MarR family transcriptional regulator compare
PS417_22445 -0.6 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_16400 -0.6 -2.1 NAD(P)H-quinone oxidoreductase compare
PS417_26755 -0.6 -2.0 nucleoside-triphosphate diphosphatase compare
PS417_15540 -0.6 -1.0 NUDIX hydrolase compare
PS417_13990 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_21655 -0.6 -0.8 aspartate kinase compare
PS417_04585 -0.6 -1.0 hypothetical protein compare
PS417_01635 -0.6 -3.4 nitrogen regulation protein NR(I) compare
PS417_20670 -0.6 -3.4 glycosyl transferase family 2 compare
PS417_05165 -0.6 -1.7 cytosol aminopeptidase compare
PS417_19425 -0.6 -0.9 allantoicase compare
PS417_08135 -0.6 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24115 -0.6 -2.0 hypothetical protein compare
PS417_10320 -0.6 -1.7 hypothetical protein compare
PS417_23775 -0.6 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_14515 -0.6 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_17160 -0.6 -1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_02040 -0.5 -1.5 3-hydroxylacyl-ACP dehydratase compare
PS417_23900 -0.5 -3.3 poly(A) polymerase compare
PS417_12660 -0.5 -1.5 hypothetical protein compare
PS417_21025 -0.5 -2.3 PEP synthetase regulatory protein compare
PS417_17155 -0.5 -2.0 cytochrome B561 compare
PS417_10575 -0.5 -1.2 DNA alkylation repair protein compare
PS417_17735 -0.5 -2.5 LacI family transcriptional regulator compare
PS417_22115 -0.5 -1.9 transcriptional regulator compare
PS417_22300 -0.5 -1.1 LTXXQ domain protein compare
PS417_26390 -0.5 -1.2 acyltransferase compare
PS417_18965 -0.5 -2.0 dienelactone hydrolase compare
PS417_08150 -0.5 -2.2 hypothetical protein compare
PS417_21480 -0.5 -1.2 23S rRNA pseudouridylate synthase compare
PS417_07470 -0.5 -1.1 hypothetical protein compare
PS417_23360 -0.5 -0.9 hypothetical protein compare
PS417_17240 -0.5 -2.4 trigger factor compare
PS417_15875 -0.5 -1.5 LuxR family transcriptional regulator compare
PS417_15650 -0.5 -1.3 glutamine amidotransferase compare
PS417_14245 -0.5 -1.0 hypothetical protein compare
PS417_10220 -0.5 -2.8 hypothetical protein compare
PS417_17650 -0.5 -2.0 proteinase compare
PS417_17855 -0.5 -1.4 major facilitator transporter compare
PS417_12355 -0.5 -1.3 magnesium chelatase compare
PS417_15085 -0.5 -2.4 ATPase AAA compare
PS417_15095 -0.5 -2.0 hypothetical protein compare
PS417_24500 -0.5 -1.9 DEAD/DEAH box helicase compare
PS417_22630 -0.5 -1.7 hypothetical protein compare
PS417_25825 -0.5 -1.2 sulfurtransferase compare
PS417_15895 -0.5 -1.6 iron dicitrate transport regulator FecR compare
PS417_15465 -0.5 -1.5 carboxynorspermidine decarboxylase compare
PS417_12900 -0.5 -2.0 Fe-S protein compare
PS417_21725 -0.5 -1.9 amino acid transporter compare
PS417_20205 -0.5 -1.7 LysR family transcriptional regulator compare
PS417_07175 -0.5 -1.3 beta-lactamase compare
PS417_14140 -0.5 -1.1 membrane protein compare
PS417_07190 -0.5 -2.3 MFS transporter compare
PS417_04685 -0.5 -2.0 histidine kinase compare
PS417_15535 -0.5 -1.7 oxidoreductase compare
PS417_19360 -0.5 -1.5 hypothetical protein compare
PS417_18760 -0.5 -1.2 hypothetical protein compare
PS417_01095 -0.5 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_13165 -0.4 -1.2 peroxidase compare
PS417_22195 -0.4 -2.1 peptidase compare
PS417_27870 -0.4 -2.0 ATP-dependent DNA helicase RecG compare
PS417_23210 -0.4 -1.4 serine acetyltransferase compare
PS417_17125 -0.4 -1.7 transcriptional regulator compare
PS417_08090 -0.4 -0.7 3-oxoacyl-ACP reductase compare
PS417_24370 -0.4 -0.7 (2Fe-2S)-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium L-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium L-Lactate across organisms