Experiment set1IT036 for Pseudomonas fluorescens SBW25

Compare to:

Sodium succinate dibasic hexahydrate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -6.0 -4.1 phosphoglycerate dehydrogenase compare
PFLU_RS01620 -5.0 -9.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01400 -4.8 -13.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00180 -4.4 -9.9 tryptophan synthase subunit beta compare
PFLU_RS28535 -4.4 -15.4 dihydroxy-acid dehydratase compare
PFLU_RS18505 -4.3 -7.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS04465 -4.3 -11.4 ATP phosphoribosyltransferase compare
PFLU_RS01605 -4.2 -7.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS23115 -4.2 -17.8 dicarboxylate/amino acid:cation symporter compare
PFLU_RS02490 -4.1 -13.3 phosphoserine phosphatase SerB compare
PFLU_RS12975 -4.0 -6.6 DUF934 domain-containing protein compare
PFLU_RS20540 -4.0 -11.8 phosphoribosylanthranilate isomerase compare
PFLU_RS27365 -4.0 -10.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS23075 -3.9 -1.7 hypothetical protein compare
PFLU_RS20580 -3.9 -12.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27370 -3.9 -14.1 anthranilate phosphoribosyltransferase compare
PFLU_RS04470 -3.9 -13.6 histidinol dehydrogenase compare
PFLU_RS25360 -3.8 -7.7 glutamate 5-kinase compare
PFLU_RS25640 -3.7 -13.3 ketol-acid reductoisomerase compare
PFLU_RS28655 -3.7 -16.3 HAD family hydrolase compare
PFLU_RS01900 -3.7 -8.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS09055 -3.5 -2.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12980 -3.5 -9.1 nitrite/sulfite reductase compare
PFLU_RS01895 -3.4 -4.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS20565 -3.4 -16.1 3-isopropylmalate dehydrogenase compare
PFLU_RS02590 -3.3 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS22740 -3.3 -5.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS20575 -3.2 -6.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS29725 -3.1 -12.3 phosphate regulon transcriptional regulatory protein PhoB compare
PFLU_RS24765 -3.1 -17.6 2-isopropylmalate synthase compare
PFLU_RS00415 -3.1 -3.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS01610 -3.1 -11.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS24125 -3.0 -10.6 cold-shock protein compare
PFLU_RS28165 -3.0 -11.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08160 -3.0 -7.1 sugar transferase compare
PFLU_RS20510 -3.0 -15.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29515 -3.0 -10.7 RidA family protein compare
PFLU_RS01625 -2.9 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00175 -2.9 -6.5 tryptophan synthase subunit alpha compare
PFLU_RS14500 -2.9 -2.7 hypothetical protein compare
PFLU_RS04315 -2.8 -4.3 rod shape-determining protein MreD compare
PFLU_RS28390 -2.8 -9.3 methionine biosynthesis protein MetW compare
PFLU_RS23940 -2.7 -1.7 hypothetical protein compare
PFLU_RS28385 -2.7 -12.5 homoserine O-acetyltransferase compare
PFLU_RS30160 -2.7 -3.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS05565 -2.7 -1.8 transporter compare
PFLU_RS23310 -2.7 -11.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23065 -2.7 -10.3 phosphate acyltransferase PlsX compare
PFLU_RS01995 -2.6 -14.0 malate dehydrogenase compare
PFLU_RS21495 -2.5 -4.1 TlpA family protein disulfide reductase compare
PFLU_RS04660 -2.5 -4.8 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS26595 -2.5 -1.7 lipoprotein compare
PFLU_RS28965 -2.4 -10.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23220 -2.4 -2.8 tRNA-Arg compare
PFLU_RS04715 -2.4 -6.1 D-alanine--D-alanine ligase compare
PFLU_RS23235 -2.3 -3.7 Arc family DNA-binding protein compare
PFLU_RS03555 -2.3 -1.7 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS23185 -2.3 -10.6 protein-glutamate O-methyltransferase CheR compare
PFLU_RS18395 -2.2 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS25755 -2.2 -3.9 pantoate--beta-alanine ligase compare
PFLU_RS24090 -2.2 -4.6 Holliday junction branch migration protein RuvA compare
PFLU_RS29095 -2.2 -17.6 polyphosphate kinase 1 compare
PFLU_RS25735 -2.2 -9.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS18630 -2.2 -2.8 NADH-quinone oxidoreductase subunit NuoE compare
PFLU_RS22595 -2.1 -3.5 OmpA family protein compare
PFLU_RS12260 -2.1 -2.4 hypothetical protein compare
PFLU_RS03645 -2.1 -12.0 tetratricopeptide repeat protein compare
PFLU_RS18530 -2.1 -4.5 DNA translocase FtsK compare
PFLU_RS24085 -2.1 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS13540 -2.1 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04165 -2.0 -4.1 cell division protein ZapE compare
PFLU_RS01645 -2.0 -11.5 S41 family peptidase compare
PFLU_RS23305 -2.0 -6.8 arginine N-succinyltransferase compare
PFLU_RS24025 -2.0 -10.4 quinolinate synthase NadA compare
PFLU_RS03765 -2.0 -9.5 sulfate adenylyltransferase subunit CysD compare
PFLU_RS30165 -2.0 -9.2 ParA family protein compare
PFLU_RS24820 -2.0 -1.3 nucleoside-diphosphate kinase compare
PFLU_RS22105 -1.9 -5.5 cysteine synthase CysM compare
PFLU_RS24590 -1.9 -1.8 cytochrome c assembly protein compare
PFLU_RS20520 -1.9 -7.2 colicin V production protein CvpA compare
PFLU_RS20515 -1.9 -2.2 amidophosphoribosyltransferase compare
PFLU_RS08165 -1.9 -2.8 acyl carrier protein compare
PFLU_RS06440 -1.8 -1.2 dCTP deaminase compare
PFLU_RS05570 -1.8 -1.3 EamA family transporter compare
PFLU_RS24205 -1.8 -2.1 DNA binding protein compare
PFLU_RS28310 -1.8 -3.2 response regulator compare
PFLU_RS08735 -1.8 -1.8 histidine phosphatase family protein compare
PFLU_RS22095 -1.8 -12.7 GTP diphosphokinase compare
PFLU_RS18640 -1.8 -5.7 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02980 -1.7 -2.7 precorrin-8X methylmutase compare
PFLU_RS02115 -1.7 -2.3 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS31185 -1.7 -4.1 hypothetical protein compare
PFLU_RS18650 -1.7 -2.2 NADH-quinone oxidoreductase subunit NuoI compare
PFLU_RS03970 -1.7 -8.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20690 -1.7 -5.6 hypothetical protein compare
PFLU_RS04070 -1.7 -4.1 peptide chain release factor 3 compare
PFLU_RS21615 -1.7 -4.2 chemotaxis protein CheW compare
PFLU_RS07665 -1.7 -1.9 type I DNA topoisomerase compare
PFLU_RS21645 -1.7 -5.5 chemotaxis protein CheA compare
PFLU_RS24550 -1.6 -1.1 homoserine dehydrogenase compare
PFLU_RS23720 -1.6 -1.5 6-phosphogluconolactonase compare
PFLU_RS26545 -1.6 -5.9 sel1 repeat family protein compare
PFLU_RS23200 -1.6 -1.1 flagellar biosynthesis anti-sigma factor FlgM compare
PFLU_RS06055 -1.5 -2.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS29275 -1.5 -4.4 DUF484 family protein compare
PFLU_RS25920 -1.5 -3.1 outer membrane protein assembly factor BamE compare
PFLU_RS20260 -1.5 -1.8 terminase compare
PFLU_RS03015 -1.5 -1.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH compare
PFLU_RS24095 -1.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS21995 -1.5 -3.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS18655 -1.5 -2.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS01485 -1.5 -7.9 cellulase compare
PFLU_RS29265 -1.5 -1.0 diaminopimelate decarboxylase compare
PFLU_RS29270 -1.5 -2.8 diaminopimelate epimerase compare
PFLU_RS07645 -1.5 -3.0 hypothetical protein compare
PFLU_RS24485 -1.5 -7.9 hypothetical protein compare
PFLU_RS27375 -1.4 -4.0 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS06680 -1.4 -2.0 hypothetical protein compare
PFLU_RS23380 -1.4 -1.2 HAD-IB family hydrolase compare
PFLU_RS21655 -1.4 -2.3 response regulator compare
PFLU_RS18675 -1.4 -4.1 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS25225 -1.4 -6.3 disulfide bond formation protein B compare
PFLU_RS23885 -1.4 -1.0 transposase compare
PFLU_RS03770 -1.4 -7.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS13710 -1.4 -2.5 DUF1294 domain-containing protein compare
PFLU_RS15410 -1.4 -2.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS14210 -1.4 -3.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS29730 -1.4 -5.8 phosphate regulon sensor histidine kinase PhoR compare
PFLU_RS20290 -1.4 -1.5 integration host factor subunit alpha compare
PFLU_RS24560 -1.3 -5.9 site-specific tyrosine recombinase XerD compare
PFLU_RS06555 -1.3 -7.5 OmpA family protein compare
PFLU_RS01285 -1.3 -0.9 HAMP domain-containing protein compare
PFLU_RS25645 -1.3 -1.5 acetolactate synthase small subunit compare
PFLU_RS03540 -1.3 -2.2 type III secretion protein compare
PFLU_RS23920 -1.3 -3.2 septation protein A compare
PFLU_RS19170 -1.3 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS09980 -1.3 -9.3 peptidase S41 compare
PFLU_RS17855 -1.3 -2.6 YjbF family lipoprotein compare
PFLU_RS22725 -1.3 -1.9 transcriptional regulator compare
PFLU_RS29455 -1.3 -1.2 dUTP diphosphatase compare
PFLU_RS22735 -1.3 -7.3 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS21060 -1.3 -3.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS08130 -1.3 -1.4 flippase compare
PFLU_RS10290 -1.3 -2.3 glucose 1-dehydrogenase compare
PFLU_RS02975 -1.3 -4.9 precorrin-3B synthase compare
PFLU_RS31100 -1.3 -3.6 preprotein translocase subunit SecG compare
PFLU_RS24545 -1.3 -0.8 threonine synthase compare
PFLU_RS02670 -1.3 -2.1 hypothetical protein compare
PFLU_RS01615 -1.2 -2.0 DUF2164 domain-containing protein compare
PFLU_RS18620 -1.2 -4.7 NADH-quinone oxidoreductase subunit B compare
PFLU_RS08660 -1.2 -1.4 heme exporter protein CcmD compare
PFLU_RS08505 -1.2 -4.9 protease HtpX compare
PFLU_RS18665 -1.2 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS20845 -1.2 -1.9 hypothetical protein compare
PFLU_RS09245 -1.2 -3.3 quaternary ammonium compound efflux SMR transporter SugE compare
PFLU_RS19175 -1.2 -5.6 trigger factor compare
PFLU_RS18670 -1.2 -3.0 NADH-quinone oxidoreductase subunit M compare
PFLU_RS20310 -1.2 -1.0 50S ribosomal protein L35 compare
PFLU_RS07275 -1.2 -4.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS01320 -1.2 -5.4 phosphoenolpyruvate carboxykinase compare
PFLU_RS22070 -1.2 -3.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS15970 -1.2 -1.4 DUF861 domain-containing protein compare
PFLU_RS28790 -1.2 -1.0 hypothetical protein compare
PFLU_RS22395 -1.1 -3.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS05960 -1.1 -2.4 NADH:flavin oxidoreductase/NADH oxidase compare
PFLU_RS01665 -1.1 -1.5 glutaredoxin 3 compare
PFLU_RS31225 -1.1 -2.9 membrane protein insertion efficiency factor YidD compare
PFLU_RS14550 -1.1 -5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS19820 -1.1 -2.0 GNAT family N-acetyltransferase compare
PFLU_RS17045 -1.1 -3.6 SDR family oxidoreductase compare
PFLU_RS23680 -1.1 -7.7 long-chain fatty acid--CoA ligase compare
PFLU_RS20390 -1.1 -1.1 DUF1654 domain-containing protein compare
PFLU_RS18625 -1.1 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS31830 -1.1 -2.0 hypothetical protein compare
PFLU_RS11495 -1.1 -0.9 ABC transporter permease compare
PFLU_RS08675 -1.1 -1.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS17150 -1.1 -2.3 hypothetical protein compare
PFLU_RS09305 -1.0 -6.6 hypothetical protein compare
PFLU_RS26770 -1.0 -6.9 DedA family protein compare
PFLU_RS05780 -1.0 -5.5 helix-turn-helix transcriptional regulator compare
PFLU_RS18635 -1.0 -3.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS23670 -1.0 -1.3 CsbD family protein compare
PFLU_RS11980 -1.0 -4.7 precorrin-6A synthase (deacetylating) compare
PFLU_RS05885 -1.0 -3.1 recombinase RecA compare
PFLU_RS04075 -1.0 -1.2 hypothetical protein compare
PFLU_RS06320 -1.0 -1.9 OmpH family outer membrane protein compare
PFLU_RS27620 -1.0 -8.1 acyl-CoA dehydrogenase compare
PFLU_RS16045 -1.0 -2.7 aromatic ring-hydroxylating dioxygenase subunit alpha compare
PFLU_RS17100 -1.0 -1.9 hypothetical protein compare
PFLU_RS15960 -1.0 -2.6 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS04510 -1.0 -0.7 malate dehydrogenase (quinone) compare
PFLU_RS29550 -1.0 -4.3 ATP-dependent DNA helicase RecG compare
PFLU_RS05610 -1.0 -4.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23730 -1.0 -6.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS26905 -1.0 -4.9 transcriptional regulator NrdR compare
PFLU_RS07650 -1.0 -6.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS16960 -1.0 -1.0 LysR family transcriptional regulator compare
PFLU_RS22000 -1.0 -3.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS02970 -1.0 -3.0 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS28320 -1.0 -2.0 glutathione synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms