Experiment set1IT036 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2851 -5.2 -2.2 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_0536 -5.1 -2.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_2585 -5.1 -1.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4386 -4.8 -2.6 Signal transduction histidine kinase compare
EX28DRAFT_4271 -4.6 -0.9 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4341 -4.6 -2.8 Protein-disulfide isomerase compare
EX28DRAFT_2531 -4.6 -5.2 endopeptidase La compare
EX28DRAFT_0125 -4.4 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2774 -4.4 -6.9 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2916 -4.2 -7.7 diaminopimelate decarboxylase compare
EX28DRAFT_2027 -4.2 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4170 -4.2 -7.3 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_4418 -4.1 -6.2 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_4155 -4.0 -3.5 DNA adenine methylase (dam) compare
EX28DRAFT_1620 -4.0 -1.1 hypothetical protein compare
EX28DRAFT_4123 -4.0 -2.7 transcriptional regulator, DeoR family compare
EX28DRAFT_4419 -4.0 -1.5 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2252 -4.0 -1.5 TolA protein compare
EX28DRAFT_4015 -4.0 -2.8 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_3898 -3.8 -1.7 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_1124 -3.8 -10.4 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1122 -3.8 -7.0 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2635 -3.8 -6.6 Fructose-2,6-bisphosphatase compare
EX28DRAFT_3401 -3.6 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_1123 -3.6 -4.7 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_0331 -3.5 -2.2 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_3614 -3.5 -6.8 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2945 -3.4 -2.6 tyrosine recombinase XerD compare
EX28DRAFT_1650 -3.3 -2.0 ribonuclease T compare
EX28DRAFT_2701 -3.3 -5.0 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4156 -3.2 -2.0 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3461 -3.2 -3.1 ornithine carbamoyltransferase compare
EX28DRAFT_4544 -3.1 -0.6 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2117 -3.1 -9.4 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_1986 -3.1 -0.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3224 -3.0 -4.0 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_2985 -3.0 -4.4 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_3645 -2.9 -3.3 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0534 -2.8 -3.3 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0972 -2.8 -2.0 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1692 -2.8 -1.2 Biofilm development protein YmgB/AriR compare
EX28DRAFT_2118 -2.7 -2.3 arsenate reductase (glutaredoxin) compare
EX28DRAFT_0111 -2.7 -1.6 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0286 -2.7 -1.5 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_4212 -2.7 -0.9 Acetyltransferase (GNAT) family compare
EX28DRAFT_2650 -2.7 -5.8 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2651 -2.7 -2.6 glutamate 5-kinase compare
EX28DRAFT_3711 -2.7 -0.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3675 -2.7 -8.5 transcriptional regulator, LacI family compare
EX28DRAFT_0935 -2.6 -4.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_4383 -2.6 -9.8 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_2917 -2.5 -4.1 Transcriptional regulator compare
EX28DRAFT_2846 -2.5 -3.8 adenylyl-sulfate kinase compare
EX28DRAFT_0333 -2.4 -6.1 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_2548 -2.4 -2.7 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3087 -2.4 -6.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
EX28DRAFT_4061 -2.4 -4.5 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2724 -2.3 -1.6 RNA compare
EX28DRAFT_4153 -2.3 -1.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3376 -2.3 -7.6 ribonuclease R compare
EX28DRAFT_3613 -2.3 -3.9 RNA compare
EX28DRAFT_4405 -2.3 -0.7 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0327 -2.2 -5.0 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_4121 -2.2 -1.9 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2265 -2.2 -0.6 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4422 -2.2 -3.5 argininosuccinate lyase compare
EX28DRAFT_0073 -2.2 -1.0 Negative regulator of sigma E activity compare
EX28DRAFT_4158 -2.2 -2.3 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2852 -2.2 -5.9 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0166 -2.1 -6.9 polyphosphate kinase 1 compare
EX28DRAFT_0272 -2.1 -1.1 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0046 -2.1 -1.8 shikimate dehydrogenase compare
EX28DRAFT_2893 -2.0 -3.9 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0533 -2.0 -3.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_1414 -2.0 -1.4 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_2169 -1.9 -3.4 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2682 -1.9 -6.9 hydroxyacylglutathione hydrolase compare
EX28DRAFT_0330 -1.9 -2.5 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0593 -1.9 -7.5 DNA-methyltransferase (dcm) compare
EX28DRAFT_4420 -1.9 -0.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0322 -1.9 -4.8 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0936 -1.8 -3.7 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2497 -1.8 -3.6 Biofilm formation regulator YbaJ compare
EX28DRAFT_0857 -1.8 -1.1 tRNA compare
EX28DRAFT_1623 -1.8 -3.9 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_0970 -1.8 -3.8 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0334 -1.8 -1.6 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_4436 -1.8 -5.5 Transcriptional regulator compare
EX28DRAFT_3368 -1.8 -0.9 tRNA dimethylallyltransferase compare
EX28DRAFT_2702 -1.7 -4.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_4120 -1.7 -3.0 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_4452 -1.7 -1.3 thioredoxin compare
EX28DRAFT_3073 -1.7 -5.1 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_0647 -1.7 -1.5 Ferritin-like protein compare
EX28DRAFT_4397 -1.7 -5.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_1626 -1.7 -1.6 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_0332 -1.7 -5.0 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0933 -1.7 -5.9 tryptophan synthase, beta subunit compare
EX28DRAFT_0934 -1.6 -6.0 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_2472 -1.6 -0.8 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_0323 -1.6 -3.2 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2864 -1.6 -4.1 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0329 -1.6 -4.4 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_3137 -1.6 -1.1 Predicted transcriptional regulators compare
EX28DRAFT_4018 -1.6 -2.0 Flavodoxins compare
EX28DRAFT_1268 -1.6 -1.7 Lysophospholipase L1 and related esterases compare
EX28DRAFT_2853 -1.6 -3.3 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_4507 -1.6 -2.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_3081 -1.5 -9.1 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_3297 -1.5 -3.2 ribonuclease, Rne/Rng family compare
EX28DRAFT_4152 -1.5 -0.9 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_1471 -1.5 -2.6 Predicted transcriptional regulator compare
EX28DRAFT_0076 -1.5 -2.3 elongation factor 4 compare
EX28DRAFT_0725 -1.5 -1.7 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_0325 -1.5 -2.7 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2050 -1.4 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_3245 -1.4 -1.9 Predicted NTP binding protein (contains STAS domain) compare
EX28DRAFT_1508 -1.4 -1.8 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_1771 -1.4 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2272 -1.4 -3.7 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0537 -1.4 -3.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2849 -1.4 -3.2 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0538 -1.4 -3.3 histidinol-phosphate aminotransferase compare
EX28DRAFT_0199 -1.4 -2.1 coproporphyrinogen oxidase (EC 1.3.3.3) compare
EX28DRAFT_1763 -1.4 -1.9 Glutamate dehydrogenase/leucine dehydrogenase compare
EX28DRAFT_2313 -1.3 -3.3 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_2845 -1.3 -1.4 Protein of unknown function (DUF3561) compare
EX28DRAFT_4541 -1.3 -1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0706 -1.3 -1.6 Entner-Doudoroff aldolase compare
EX28DRAFT_1542 -1.3 -4.2 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_2999 -1.3 -2.2 Fe-S cluster protector protein compare
EX28DRAFT_3639 -1.3 -1.2 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_4461 -1.3 -2.1 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_0167 -1.3 -0.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_2043 -1.3 -3.5 transcriptional regulator, AsnC family compare
EX28DRAFT_0362 -1.3 -6.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_0540 -1.3 -3.3 ATP phosphoribosyltransferase compare
EX28DRAFT_3089 -1.3 -0.7 Transcriptional regulators compare
EX28DRAFT_1121 -1.2 -1.4 Sugar kinases, ribokinase family compare
EX28DRAFT_2485 -1.2 -3.2 DNA replication and repair protein RecR compare
EX28DRAFT_2859 -1.2 -2.2 hypothetical protein compare
EX28DRAFT_1547 -1.2 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0328 -1.2 -1.1 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0769 -1.2 -0.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2837 -1.2 -6.0 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_2904 -1.2 -6.9 phosphoenolpyruvate-protein phosphotransferase compare
EX28DRAFT_0228 -1.2 -0.9 tRNA compare
EX28DRAFT_2654 -1.2 -5.1 Alpha/beta hydrolase of unknown function (DUF1100) compare
EX28DRAFT_1396 -1.2 -0.7 Amidases related to nicotinamidase compare
EX28DRAFT_2787 -1.2 -1.1 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
EX28DRAFT_4437 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4297 -1.2 -0.8 cell division ATP-binding protein FtsE compare
EX28DRAFT_1005 -1.2 -2.3 RNA compare
EX28DRAFT_0214 -1.2 -2.1 cysteine synthase A compare
EX28DRAFT_1039 -1.2 -1.3 Sortase and related acyltransferases compare
EX28DRAFT_4459 -1.2 -4.0 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_1584 -1.1 -2.1 hypothetical protein compare
EX28DRAFT_4157 -1.1 -4.4 2-phosphoglycolate phosphatase, prokaryotic compare
EX28DRAFT_2677 -1.1 -0.9 hypothetical protein compare
EX28DRAFT_1281 -1.1 -1.4 hypothetical protein compare
EX28DRAFT_2946 -1.1 -2.1 flavodoxin, long chain compare
EX28DRAFT_0494 -1.1 -1.0 Protein-tyrosine-phosphatase compare
EX28DRAFT_3302 -1.1 -5.0 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_1988 -1.1 -5.8 Predicted ATP-dependent protease compare
EX28DRAFT_1942 -1.1 -2.0 amidohydrolase, AtzE family compare
EX28DRAFT_2498 -1.1 -1.7 Haemolysin expression modulating protein compare
EX28DRAFT_2037 -1.1 -1.3 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_1308 -1.1 -1.2 hypothetical protein compare
EX28DRAFT_4446 -1.1 -3.5 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2045 -1.1 -0.6 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2348 -1.1 -0.5 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_4493 -1.1 -2.7 Transcriptional regulator compare
EX28DRAFT_0250 -1.0 -1.4 PAAR motif compare
EX28DRAFT_0324 -1.0 -1.4 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_1684 -1.0 -2.6 FeS assembly protein SufD compare
EX28DRAFT_4246 -1.0 -6.9 excinuclease ABC, A subunit compare
EX28DRAFT_2958 -1.0 -1.0 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3248 -1.0 -2.3 ABC transport permease subunit compare
EX28DRAFT_2527 -1.0 -1.8 acyl-CoA thioester hydrolase, YbgC/YbaW family compare
EX28DRAFT_4019 -1.0 -4.3 Transcriptional regulators compare
EX28DRAFT_0313 -1.0 -2.4 acetate kinase compare
EX28DRAFT_3259 -1.0 -2.3 Predicted P-loop-containing kinase compare
EX28DRAFT_3667 -1.0 -1.3 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_3091 -1.0 -2.8 Urease accessory protein UreH compare
EX28DRAFT_1573 -1.0 -0.6 hypothetical protein compare
EX28DRAFT_2211 -1.0 -5.4 Excinuclease ABC subunit B compare
EX28DRAFT_1888 -1.0 -2.7 Curlin associated repeat compare
EX28DRAFT_0074 -1.0 -4.6 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_4296 -1.0 -2.6 putative protein insertion permease FtsX compare
EX28DRAFT_0539 -1.0 -3.0 histidinol dehydrogenase compare
EX28DRAFT_1839 -1.0 -2.8 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_1374 -1.0 -0.6 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_2474 -1.0 -2.7 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_2425 -1.0 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3028 -0.9 -4.0 Glutathione S-transferase compare
EX28DRAFT_0349 -0.9 -3.4 glycerol-3-phosphate dehydrogenase, anaerobic, A subunit compare
EX28DRAFT_0440 -0.9 -3.6 ATPases involved in chromosome partitioning compare
EX28DRAFT_0758 -0.9 -2.2 septum site-determining protein MinC compare
EX28DRAFT_3449 -0.9 -0.9 Predicted membrane protein compare
EX28DRAFT_2699 -0.9 -1.5 chorismate mutase (EC 5.4.99.5) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms